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Simon Tavaré

Columbia University

97H-index
525Paper Count
5.6WCitation Count
Published Papers 93
Publication Date
Approximate Bayesian computation sequential Monte Carlo via random forests
err2025-10-23
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errOAAI
errDinh, Khanh N.; Liu, Cecile; Xiang, Zijin; Liu, Zhihan; Tavare, Simon
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Ongoing genome doubling shapes evolvability and immunity in ovarian cancer
errNature
IF48.5
err2025-07-16
err0
errOAAI
errAndrew McPherson; Ignacio Vázquez-García; Matthew A. Myers; Duaa H. Al-Rawi; Matthew Zatzman; Adam C. Weiner; Samuel Freeman; Neeman Mohibullah; Gryte Satas; Marc J. Williams; Nicholas Ceglia; Danguolė Norkūnaitė; Allen W. Zhang; Jun Li; Jamie L. P. Lim; Michelle Wu; Seongmin Choi; Eliyahu Havasov; Diljot Grewal; Hongyu Shi; Minsoo Kim; Roland F. Schwarz; Tom Kaufmann; Khanh Ngoc Dinh; Florian Uhlitz; Julie Tran; Yushi Wu; Ruchi Patel; Satish Ramakrishnan; DooA Kim; Justin Clarke; Hunter Green; Emily Ali; Melody DiBona; Nancy Varice; Ritika Kundra; Vance Broach; Ginger J. Gardner; Kara Long Roche; Yukio Sonoda; Oliver Zivanovic; Sarah H. Kim; Rachel N. Grisham; Ying L. Liu; Agnes Viale; Nicole Rusk; Yulia Lakhman; Lora H. Ellenson; Simon Tavaré; Samuel Aparicio; Dennis S. Chi; Carol Aghajanian; Nadeem R. Abu-Rustum; Claire F. Friedman; Dmitriy Zamarin; Britta Weigelt; Samuel F. Bakhoum; Sohrab P. Shah
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Disentangling oncogenic amplicons in esophageal adenocarcinoma (vol 15, 4074, 2024)
err2024-05-28
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errOAAI
errNg, Alvin Wei Tian; McClurg, Dylan Peter; Wesley, Ben; Zamani, Shahriar A.; Black, Emily; Miremadi, Ahmad; Giger, Olivier; ten Hoopen, Rogier; Devonshire, Ginny; Redmond, Aisling M.; Grehan, Nicola; Jammula, Sriganesh; Blasko, Adrienn; Li, Xiaodun; Aparicio, Samuel; Tavare, Simon; Nowicki-Osuc, Karol; Fitzgeral, Rebecca C.
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Disentangling oncogenic amplicons in esophageal adenocarcinoma
err2024-05-14
err2
errOAAI
errNg, Alvin Wei Tian; McClurg, Dylan Peter; Wesley, Ben; Zamani, Shahriar A.; Black, Emily; Miremadi, Ahmad; Giger, Olivier; ten Hoopen, Rogier; Devonshire, Ginny; Redmond, Aisling M.; Grehan, Nicola; Jammula, Sriganesh; Li, Xiaodun; Blasko, Adrienn; Aparicio, Samuel; Tavare, Simon; Nowicki-Osuch, Karol; Fitzgerald, Rebecca C.
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Spatial regulation of Drosophila ovarian Follicle Stem Cell division rates and cell cycle transitions
err2023-09-25
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errOAAI
errMelamed, David; Choi, Aaron; Reilein, Amy; Tavare, Simon; Kalderon, Daniel
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Single-Cell RNA Sequencing Unifies Developmental Programs of Esophageal and Gastric Intestinal Metaplasia
err2023-03-17
err22
errOAAI
errNowicki-Osuch, Karol; Zhuang, Lizhe; Cheung, Tik Shing; Black, Emily L.; Masque-Soler, Neus; Devonshire, Ginny; Redmond, Aisling M.; Freeman, Adam; di Pietro, Massimilliano; Pilonis, Nastazja; Januszewicz, Wladyslaw; O'Donovan, Maria; Tavare, Simon; Shields, Jacqueline D.; Fitzgerald, Rebecca C.
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Rearrangement processes and structural variations show evidence of selection in oesophageal adenocarcinomas
err2022-04-08
err10
errOAAI
errNg, Alvin Wei Tian; Contino, Gianmarco; Killcoyne, Sarah; Devonshire, Ginny; Hsu, Ray; Abbas, Sujath; Su, Jing; Redmond, Aisling M.; Weaver, Jamie M. J.; Eldridge, Matthew D.; Tavare, Simon; Edwards, Paul A. W.; Fitzgerald, Rebecca C.
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The mutREAD method detects mutational signatures from low quantities of cancer DNA
err2020-06-23
err10
errOAAI
errPerner, Juliane; Abbas, Sujath; Nowicki-Osuch, Karol; Devonshire, Ginny; Eldridge, Matthew D.; Tavare, Simon; Fitzgerald, Rebecca C.
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Statistical Inference for the Evolutionary History of Cancer Genomes
err2020-02-01
err15
errOAAI
errDinh, Khanh N.; Jaksik, Roman; Kimmel, Marek; Lambert, Amaury; Tavare, Simon
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Patient-specific cancer genes contribute to recurrently perturbed pathways and establish therapeutic vulnerabilities in esophageal adenocarcinoma
err2019-07-15
err31
errOAAI
errMourikis, Thanos P.; Benedetti, Lorena; Foxall, Elizabeth; Temelkovski, Damjan; Nulsen, Joel; Perner, Juliane; Cereda, Matteo; Lagergren, Jesper; Howell, Michael; Yau, Christopher; Fitzgerald, Rebecca C.; Scaffidi, Paola; Noorani, Ayesha; Edwards, Paul A. W.; Elliott, Rachael Fels; Grehan, Nicola; Nutzinger, Barbara; Hughes, Caitriona; Fidziukiewicz, Elwira; Bornschein, Jan; MacRae, Shona; Crawte, Jason; Northrop, Alex; Contino, Gianmarco; Li, Xiaodun; de la Rue, Rachel; Katz-Summercorn, Annalise; Abbas, Sujath; Loureda, Daniel; O'Donovan, Maria; Miremadi, Ahmad; Malhotra, Shalini; Tripathi, Monika; Tavare, Simon; Lynch, Andy G.; Eldridge, Matthew; Secrier, Maria; Bower, Lawrence; Devonshire, Ginny; Jammula, Sriganesh; Davies, Jim; Crichton, Charles; Carroll, Nick; Safranek, Peter; Hindmarsh, Andrew; Sujendran, Vijayendran; Hayes, Stephen J.; Ang, Yeng; Sharrocks, Andrew; Preston, Shaun R.; Oakes, Sarah; Bagwan, Izhar; Save, Vicki; Skipworth, Richard J. E.; Hupp, Ted R.; O'Neill, J. Robert; Tucker, Olga; Beggs, Andrew; Taniere, Philippe; Puig, Sonia; Underwood, Timothy J.; Walker, Robert C.; Grace, Ben L.; Barr, Hugh; Shepherd, Neil; Old, Oliver; Gossage, James; Davies, Andrew; Chang, Fuju; Zylstra, Janine; Mahadeva, Ula; Goh, Vicky; Sanders, Grant; Berrisford, Richard; Harden, Catherine; Lewis, Mike; Cheong, Ed; Kumar, Bhaskar; Parsons, Simon L.; Soomro, Irshad; Kaye, Philip; Saunders, John; Lovat, Laurence; Haidry, Rehan; Igali, Laszlo; Scott, Michael; Sothi, Sharmila; Suortamo, Sari; Lishman, Suzy; Hanna, George B.; Peters, Christopher J.; Moorthy, Krishna; Grabowska, Anna; Turkington, Richard; McManus, Damian; Khoo, David; Fickling, Will; Ciccarelli, Francesca D.
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Loss of the interleukin-6 receptor causes immunodeficiency, atopy, and abnormal inflammatory responses
err2019-06-24
err153
errOAAI
errSpencer, Sarah; Bal, Sevgi Koestel; Egner, William; Allen, Hana Lango; Raza, Syed I.; Ma, Chi A.; Gurel, Meltem; Zhang, Yuan; Sun, Guangping; Sabroe, Ruth A.; Greene, Daniel; Rae, William; Shahin, Tala; Kania, Katarzyna; Ardy, Rico Chandra; Thian, Marini; Staples, Emily; Pecchia-Bekkum, Annika; Worrall, William P. M.; Stephens, Jonathan; Brown, Matthew; Tuna, Salih; York, Melanie; Shackley, Fiona; Kerrin, Diarmuid; Sargur, Ravishankar; Condliffe, Alison; Tipu, Hamid Nawaz; Kuehn, Hye Sun; Rosenzweig, Sergio D.; Turro, Ernest; Tavare, Simon; Thrasher, Adrian J.; Jodrell, Duncan Ian; Smith, Kenneth G. C.; Boztug, Kaan; Milner, Joshua D.; Thaventhiran, James E. D.
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The landscape of selection in 551 esophageal adenocarcinomas defines genomic biomarkers for the clinic
err2019-02-04
err154
errOAAI
errFrankell, Alexander M.; Jammula, SriGanesh; Li, Xiaodun; Contino, Gianmarco; Killcoyne, Sarah; Abbas, Sujath; Perner, Juliane; Bower, Lawrence; Devonshire, Ginny; Cocks, Emma; Grehan, Nicola; Mok, James; O'Donovan, Maria; MacRae, Shona; Eldridge, Matthew D.; Tavare, Simon; Fitzgerald, Rebecca C.; Noorani, Ayesha; Edwards, Paul A. W.; Grehanl, Nicola; Nutzinger, Barbara; Hughes, Ca Itriona; Fidziukiewicz, Elwira; Northrop, Alex; de la Rue, Rachel; Katz-Summercorn, Annalise; Loureda, Daniel; Miremadi, Ahmad; Malhotra, Shalini; Tripathi, Monika; Lynch, Andy G.; Eldridge, Matthew; Secrier, Maria; Davies, Jim; Crichton, Charles; Carro, Nick; Safranek, Peter; Hindmarsh, Andrew; Sujendran, Vijayendran; Hayes, Stephen J.; Ang, Yeng; Sharrocks, Andrew; Preston, Shaun R.; Oakes, Sarah; Bagwan, Izhar; Save, Vicki; Skipworth, Richard J. E.; Hupp, Ted R.; ONeill, J. Robert; Tucker, Olga; Beggs, Andrew; Taniere, Philippe; Puig, Sonia; Underwood, Timothyj; Walker, Robert C.; Grace, Ben L.; Barr, Hugh; Shepherd, Neil; Old, Oliver; Lagergren, Jesper; Gossage, James; Davies, Andrew; Chang, Fuju; Zylstra, Janine; Mahadeva, Ula; Goh, Vicky; Ciccarelli, Francesca D.; Sanders, Grant; Berrisford, Richard; Harden, Catherine; Lewis, Mike; Cheong, Ed; Kumar, Bhaskar; Parsons, Simon L.; Soomro, Irshad; Kaye, Philip; Saunders, John; Lovat, Laurence; Haidry, Rehan; Igali, Laszlo; Scott, Michael; Sothi, Sharmila; Suortamo, Sari; Lishman, Suzy; Hanna, George B.; Moorthy, Krishna; Peters, Christopher J.; Grabowska, Anna; Turkington, Richard; McManus, Damian; Coleman, Helen; Khoo, David; Fickling, Will
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Sequencing of prostate cancers identifies new cancer genes, routes of progression and drug targets
err2018-04-16
err177
errOAAI
errWedge, David C.; Gundem, Gunes; Mitchell, Thomas; Woodcock, Dan J.; Martincorena, Inigo; Ghori, Mohammed; Zamora, Jorge; Butler, Adam; Whitaker, Hayley; Kote-Jarai, Zsofia; Alexandrov, Ludmil B.; Van Loo, Peter; Massie, Charlie E.; Dentro, Stefan; Warren, Anne Y.; Verrill, Clare; Berney, Dan M.; Dennis, Nening; Merson, Sue; Hawkins, Steve; Howat, William; Lu, Yong-Jie; Lambert, Adam; Kay, Jonathan; Kremeyer, Barbara; Karaszi, Katalin; Luxton, Hayley; Camacho, Niedzica; Marsden, Luke; Edwards, Sandra; Matthews, Lucy; Bo, Valeria; Leongamornlert, Daniel; McLaren, Stuart; Ng, Anthony; Yu, Yongwei; Zhang, Hongwei; Dadaev, Tokhir; Thomas, Sarah; Easton, Douglas F.; Ahmed, Mahbubl; Bancroft, Elizabeth; Fisher, Cyril; Livni, Naomi; Nicol, David; Tavare, Simon; Gill, Pelvender; Greenman, Christopher; Khoo, Vincent; Van As, Nicholas; Kumar, Pardeep; Ogden, Christopher; Cahill, Declan; Thompson, Alan; Mayer, Erik; Rowe, Edward; Dudderidge, Tim; Gnanapragasam, Vincent; Shah, Nimish C.; Raine, Keiran; Jones, David; Menzies, Andrew; Stebbings, Lucy; Teague, Jon; Hazell, Steven; Corbishley, Cathy; de Bono, Johann; Attard, Gerhardt; Isaacs, William; Visakorpi, Tapio; Fraser, Michael; Boutros, Paul C.; Bristow, Robert G.; Workman, Paul; Sander, Chris; Hamdy, Freddie C.; Futreal, Andrew; McDermott, Ultan; Al-Lazikani, Bissan; Lynch, Andrew G.; Bova, G. Steven; Foster, Christopher S.; Brewer, Daniel S.; Neal, David E.; Cooper, Colin S.; Eeles, Rosalind A.
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A comparative analysis of whole genome sequencing of esophageal adenocarcinoma pre- and post-chemotherapy (vol 27, pg 902, 2017)
err2017-10-03
err0
PREAI
errNoorani, Ayesha; Bornschein, Jan; Lynch, Andy G.; Secrier, Maria; Achilleos, Achilleas; Eldridge, Matthew; Bower, Lawrence; Weaver, Jamie M. J.; Crawte, Jason; Ong, Chin-Ann; Shannon, Nicholas; MacRae, Shona; Grehan, Nicola; Nutzinger, Barbara; O'Donovan, Maria; Hardwick, Richard; Tavare, Simon; Fitzgerald, Rebecca C.
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Synthetic lethality between androgen receptor signalling and the PARP pathway in prostate cancer
err2017-08-29
err204
errOAAI
errAsim, Mohammad; Tarish, Firas; Zecchini, Heather I.; Sanjiv, Kumar; Gelali, Eleni; Massie, Charles E.; Baridi, Ajoeb; Warren, Anne Y.; Zhao, Wanfeng; Ogris, Christoph; McDuffus, Leigh-Anne; Mascalchi, Patrice; Shaw, Greg; Dev, Harveer; Wadhwa, Karan; Wijnhoven, Paul; Forment, Josep V.; Lyons, Scott R.; Lynch, Andy G.; O'Neill, Cormac; Zecchini, Vincent R.; Rennie, Paul S.; Baniahmad, Aria; Tavare, Simon; Mills, Ian G.; Galanty, Yaron; Crosetto, Nicola; Schultz, Niklas; Neal, David; Helleday, Thomas
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A comparative analysis of whole genome sequencing of esophageal adenocarcinoma pre- and post-chemotherapy
err2017-05-02
err19
errOAAI
errNoorani, Ayesha; Bornschein, Jan; Lynch, Andy G.; Secrier, Maria; Achilleos, Achilleas; Eldridge, Matthew; Bower, Lawrence; Weaver, Jamie M. J.; Crawte, Jason; Ong, Chin-Ann; Shannon, Nicholas; MacRae, Shona; Grehan, Nicola; Nutzinger, Barbara; O'Donovan, Maria; Hardwick, Richard; Tavare, Simon; Fitzgerald, Rebecca C.
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Mutational signatures in esophageal adenocarcinoma define etiologically distinct subgroups with therapeutic relevance (vol 48, pg 1131, 2016)
err2017-02-01
err8
errOAAI
errSecrier, Maria; Li, Xiaodun; de Silva, Nadeera; Eldridge, Matthew D.; Contino, Gianmarco; Bornschein, Jan; MacRae, Shona; Grehan, Nicola; O'Donovan, Maria; Miremadi, Ahmad; Yang, Tsun-Po; Bower, Lawrence; Chettouh, Hamza; Crawte, Jason; Galeano-Dalmau, Nuria; Grabowska, Anna; Saunders, John; Underwood, Tim; Waddell, Nicola; Barbour, Andrew P.; Nutzinger, Barbara; Achilleos, Achilleas; Edwards, Paul A. W.; Lynch, Andy G.; Tavare, Simon; Fitzgerald, Rebecca C.
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Mutational signatures in esophageal adenocarcinoma define etiologically distinct subgroups with therapeutic relevance
err2016-09-05
err291
errOAAI
errSecrier, Maria; Li, Xiaodun; de Silva, Nadeera; Eldridge, Matthew D.; Contino, Gianmarco; Bornschein, Jan; MacRae, Shona; Grehan, Nicola; O'Donovan, Maria; Miremadi, Ahmad; Yang, Tsun-Po; Bower, Lawrence; Chettouh, Hamza; Crawte, Jason; Galeano-Dalmau, Nuria; Grabowska, Anna; Saunders, John; Underwood, Tim; Waddell, Nicola; Barbour, Andrew P.; Nutzinger, Barbara; Achilleos, Achilleas; Edwards, Paul A. W.; Lynch, Andy G.; Tavare, Simon; Fitzgerald, Rebecca C.
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