Not logged in.png)
Share.png)
SavePDBe: enhanced structural data exploration to facilitate discovery
Afonso, Marcelo Querino Lima; Pidruchna, Ivanna; Nair, Sreenath; Midlik, Adam; Lawal, Dare; Vollmar, Melanie; Appasamy, Sri Devan; Choudhary, Preeti; Kunnakkattu, Ibrahim Roshan; Bertoni, Damian; Escobar, Cristian A.; Balasubramaniyan, Balakumaran; Gaborova, Romana; Leines, Grisell Diaz; Harrus, Deborah; Gupta, Deepti; Evans, Genevieve L.; Paramval, Urmila; Magana, Paulyna; Tanweer, Ahsan; Todor, Mihai; Thorpe, Christopher J.; Tsenkov, Maxim; Ganguly, Sudakshina; Ellaway, Joseph; Bueno, Weslley Morellato; Bellaiche, Adam; Sehnal, David; Svobodova, Radka; Fleming, Jennifer R.; Velankar, Sameer Share Save AlphaFold Protein Structure Database 2025: a redesigned interface and updated structural coverageBertoni, Damian; Tsenkov, Maxim; Magana, Paulyna; Nair, Sreenath; Pidruchna, Ivanna; Querino Lima Afonso, Marcelo; Midlik, Adam; Paramval, Urmila; Lawal, Dare; Tanweer, Ahsan; Last, Meera; Patel, Risha; Laydon, Agata; Lasecki, Dariusz; Dietrich, Nick; Tomlinson, Hamish; ZIDek, Augustin; Green, Tim; Kovalevskiy, Oleg; Lau, Andy; Kandathil, Shaun; Bordin, Nicola; Sillitoe, Ian; Mirdita, Milot; Jones, David; Orengo, Christine; Steinegger, Martin; Fleming, Jennifer R.; Velankar, Sameer Share Save Share Save Share Save Share Save CATH v4.4: major expansion of CATH by experimental and predicted structural dataWaman, Vaishali P.; Bordin, Nicola; Lau, Andy; Kandathil, Shaun; Wells, Jude; Miller, David; Velankar, Sameer; Jones, David T.; Sillitoe, Ian; Orengo, Christine Share Save PDB NextGen Archive: centralizing access to integrated annotations and enriched structural information by the Worldwide Protein Data BankChoudhary, Preeti; Feng, Zukang; Berrisford, John; Chao, Henry; Ikegawa, Yasuyo; Peisach, Ezra; Piehl, Dennis W.; Smith, James; Tanweer, Ahsan; Varadi, Mihaly; Westbrook, John D.; Young, Jasmine Y.; Patwardhan, Ardan; Morris, Kyle L.; Hoch, Jeffrey C.; Kurisu, Genji; Velankar, Sameer; Burley, Stephen K. Share Save PDBe CCDUtils: an RDKit-based toolkit for handling and analysing small molecules in the Protein Data BankKunnakkattu, Ibrahim Roshan; Choudhary, Preeti; Pravda, Lukas; Nadzirin, Nurul; Smart, Oliver S.; Yuan, Qi; Anyango, Stephen; Nair, Sreenath; Varadi, Mihaly; Velankar, Sameer Share Save EMBL's European Bioinformatics Institute (EMBL-EBI) in 2023Thakur, Matthew; Buniello, Annalisa; Brooksbank, Catherine; Gurwitz, Kim T.; Hall, Matthew; Hartley, Matthew; Hulcoop, David G.; Leach, Andrew R.; Marques, Diana; Martin, Maria; Mithani, Aziz; McDonagh, Ellen M.; Mutasa-Gottgens, Euphemia; Ochoa, David; Perez-Riverol, Yasset; Stephenson, James; Varadi, Mihaly; Velankar, Sameer; Vizcaino, Juan Antonio; Witham, Rick; McEntyre, Johanna Share Save EMDB-the Electron Microscopy Data BankTurner, Jack; Abbott, Sanja; Fonseca, Neli; Carrijo, Lucas; Duraisamy, Amudha Kumari; Salih, Osman; Wang, Zhe; Kleywegt, Gerard J.; Morris, Kyle L.; Patwardhan, Ardan; Burley, Stephen K.; Crichlow, Gregg; Feng, Zukang; Flatt, Justin W.; Ghosh, Sutapa; Hudson, Brian P.; Lawson, Catherine L.; Liang, Yuhe; Peisach, Ezra; Persikova, Irina; Sekharan, Monica; Shao, Chenghua; Young, Jasmine; Velankar, Sameer; Armstrong, David; Bage, Marcus; Bueno, Wesley Morellato; Evans, Genevieve; Gaborova, Romana; Ganguly, Sudakshina; Gupta, Deepti; Harrus, Deborah; Tanweer, Ahsan; Bansal, Manju; Rangannan, Vetriselvi; Kurisu, Genji; Cho, Hasumi; Ikegawa, Yasuyo; Kengaku, Yumiko; Kim, Ju Yaen; Niwa, Satomi; Sato, Junko; Takuwa, Ayako; Yu, Jian; Hoch, Jeffrey C.; Baskaran, Kumaran; Xu, Wenqing; Zhang, Weizhe; Ma, Xiaodan Share Save AlphaFold Protein Structure Database in 2024: providing structure coverage for over 214 million protein sequencesVaradi, Mihaly; Bertoni, Damian; Magana, Paulyna; Paramval, Urmila; Pidruchna, Ivanna; Radhakrishnan, Malarvizhi; Tsenkov, Maxim; Nair, Sreenath; Mirdita, Milot; Yeo, Jingi; Kovalevskiy, Oleg; Tunyasuvunakool, Kathryn; Laydon, Agata; Zidek, Augustin; Tomlinson, Hamish; Hariharan, Dhavanthi; Abrahamson, Josh; Green, Tim; Jumper, John; Birney, Ewan; Steinegger, Martin; Hassabis, Demis; Velankar, Sameer Share Save Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experimentLensink, Marc F.; Brysbaert, Guillaume; Raouraoua, Nessim; Bates, Paul A.; Giulini, Marco; Honorato, Rodrigo V.; van Noort, Charlotte; Teixeira, Joao M. C.; Bonvin, Alexandre M. J. J.; Kong, Ren; Shi, Hang; Lu, Xufeng; Chang, Shan; Liu, Jian; Guo, Zhiye; Chen, Xiao; Morehead, Alex; Roy, Raj S.; Wu, Tianqi; Giri, Nabin; Quadir, Farhan; Chen, Chen; Cheng, Jianlin; Del Carpio, Carlos A.; Ichiishi, Eichiro; Rodriguez-Lumbreras, Luis A.; Fernandez-Recio, Juan; Harmalkar, Ameya; Chu, Lee-Shin; Canner, Sam; Smanta, Rituparna; Gray, Jeffrey J.; Li, Hao; Lin, Peicong; He, Jiahua; Tao, Huanyu; Huang, Sheng-You; Roel-Touris, Jorge; Jimenez-Garcia, Brian; Christoffer, Charles W.; Jain, Anika J.; Kagaya, Yuki; Kannan, Harini; Nakamura, Tsukasa; Terashi, Genki; Verburgt, Jacob C.; Zhang, Yuanyuan; Zhang, Zicong; Fujuta, Hayato; Sekijima, Masakazu; Kihara, Daisuke; Khan, Omeir; Kotelnikov, Sergei; Ghani, Usman; Padhorny, Dzmitry; Beglov, Dmitri; Vajda, Sandor; Kozakov, Dima; Negi, Surendra S.; Ricciardelli, Tiziana; Barradas-Bautista, Didier; Cao, Zhen; Chawla, Mohit; Cavallo, Luigi; Oliva, Romina; Yin, Rui; Cheung, Melyssa; Guest, Johnathan D.; Lee, Jessica; Pierce, Brian G.; Shor, Ben; Cohen, Tomer; Halfon, Matan; Schneidman-Duhovny, Dina; Zhu, Shaowen; Yin, Rujie; Sun, Yuanfei; Shen, Yang; Maszota-Zieleniak, Martyna; Bojarski, Krzysztof K.; Lubecka, Emilia A.; Marcisz, Mateusz; Danielsson, Annemarie; Dziadek, Lukasz; Gaardlos, Margrethe; Gieldon, Artur; Liwo, Adam; Samsonov, Sergey A.; Slusarz, Rafal; Zieba, Karolina; Sieradzan, Adam K.; Czaplewski, Cezary; Kobayashi, Shinpei; Miyakawa, Yuta; Kiyota, Yasuomi; Takeda-Shitaka, Mayuko; Olechnovic, Kliment; Valancauskas, Lukas; Dapkunas, Justas; Venclovas, Ceslovas; Wallner, Bjorn; Yang, Lin; Hou, Chengyu; He, Xiaodong; Guo, Shuai; Jiang, Shenda; Ma, Xiaoliang; Duan, Rui; Qui, Liming; Xu, Xianjin; Zou, Xiaoqin; Velankar, Sameer; Wodak, Shoshana J. Share Save Share Save Share Save Share Save AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organismsBordin, Nicola; Sillitoe, Ian; Nallapareddy, Vamsi; Rauer, Clemens; Lam, Su Datt; Waman, Vaishali P.; Sen, Neeladri; Heinzinger, Michael; Littmann, Maria; Kim, Stephanie; Velankar, Sameer; Steinegger, Martin; Rost, Burkhard; Orengo, Christine Share Save EMBL's European Bioinformatics Institute (EMBL-EBI) in 2022Thakur, Matthew; Bateman, Alex; Brooksbank, Cath; Freeberg, Mallory; Harrison, Melissa; Hartley, Matthew; Keane, Thomas; Kleywegt, Gerard; Leach, Andrew; Levchenko, Mariia; Morgan, Sarah; McDonagh, Ellen M.; Orchard, Sandra; Papatheodorou, Irene; Velankar, Sameer; Vizcaino, Juan Antonio; Witham, Rick; Zdrazil, Barbara; McEntyre, Johanna Share Save 3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resourcesVaradi, Mihaly; Nair, Sreenath; Sillitoe, Ian; Tauriello, Gerardo; Anyango, Stephen; Bienert, Stefan; Borges, Clemente; Deshpande, Mandar; Green, Tim; Hassabis, Demis; Hatos, Andras; Hegedus, Tamas; Hekkelman, Maarten L.; Joosten, Robbie; Jumper, John; Laydon, Agata; Molodenskiy, Dmitry; Piovesan, Damiano; Salladini, Edoardo; Salzberg, Steven L.; Sommer, Markus J.; Steinegger, Martin; Suhajda, Erzsebet; Svergun, Dmitri; Tenorio-Ku, Luiggi; Tosatto, Silvio; Tunyasuvunakool, Kathryn; Waterhouse, Andrew Mark; Zidek, Augustin; Schwede, Torsten; Orengo, Christine; Velankar, Sameer Share Save Share Save 
.png){kind=icon}
.png){kind=icon}
.png){kind=icon}
.png){kind=icon}
.png){kind=icon}