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Yufeng Shen

columbia university irving medical center

85H-index
658Paper Count
3.4WCitation Count
Published Papers 208
Publication Date
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Understanding language model scaling for protein fitness prediction
errNature Computational Science
IF18.3
err2026-07-13
err0
PREAI
errChao Hou; Di Liu; Aziz Zafar; Yufeng Shen
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Magnetic Alignment Meets Phase Separation: Fabricating Flexible Graphite/Silicone Rubber Films with High Through-plane Thermal Conductivity
errCarbon
IF11.6
err2026-03-13
err0
PREAI
errJun Jin; Yang Su; Jiachen Guo; Yufeng Shen; Minghui Zhang; Xiaozhou Sun; Bo Peng; Min Chen; Limin Wu
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Antisense oligonucleotides to KIF1A polymorphisms expand targets and rescue patient-derived neurons in vitro
errNature Communications
IF15.7
err2026-01-09
err0
errOAAI
errMichael V. Zuccaro; Randee E. Young; Jiangyuan Hu; Patricia Lanzano; Ekaterina Semenova; Xiaoqi Lin; Alicja Skowronski; Yufeng Shen; Tae Hyun Kim; Danny E. Miller; Noelle Germain; Patrick Sarmiere; Charles A. LeDuc; Wendy K. Chung
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errSave
Developments and Opportunities in Temperature-Responsive Thermal Smart Materials
errADVANCED MATERIALS
IF26.8
err2025-09-01
err0
PREAI
errShen, Yufeng; Jin, Jun; Su, Yang; Chen, Min; Wu, Limin
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errSave
PreMode predicts mode-of-action of missense variants by deep graph representation learning of protein sequence and structural context
errNature Communications
IF15.7
err2025-08-05
err0
errOAAI
errGuojie Zhong; Yige Zhao; Demi Zhuang; Wendy K. Chung; Yufeng Shen
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Germline and somatic variants in DNMT3A and other clonal haematopoiesis of indeterminate potential genes contribute to pulmonary arterial hypertension
errEUROPEAN HEART JOURNAL
IF35.6
err2025-08-01
err1
errOAAI
errAl-Qazazi, Ruaa; Emon, Isaac M.; Potus, Francois; Martin, Ashley Y.; Lima, Patricia D. A.; Vlasschaert, Caitlyn; Ott, Benjamin P.; Chen, Kuang-Hueih; Wu, Danchen; Dasgupta, Asish; Noordhof, Curtis; Jefferson, Lindsay; Buttigieg, Marco M.; Mcnaughton, Amy J. M.; Hindmarch, Charles C. T.; Bick, Alexander G.; Nichols, William C.; Chung, Wendy K.; Hassoun, Paul M.; Damico, Rachel L.; Zhu, Na; Shen, Yufeng; Rauh, Michael J.; Archer, Stephen L.
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Genome sequencing is critical for forecasting outcomes following congenital cardiac surgery
errNature Communications
IF15.7
err2025-07-10
err0
errOAAI
errW. Scott Watkins; Edgar J. Hernandez; Thomas A. Miller; Nathan R. Blue; Raquel Mae Zimmerman; Eric R. Griffiths; Erwin Frise; Daniel Bernstein; Marko T. Boskovski; Martina Brueckner; Wendy K. Chung; J. William Gaynor; Bruce D. Gelb; Elizabeth Goldmuntz; Peter J. Gruber; Jane W. Newburger; Amy E. Roberts; Sarah U. Morton; John E. Mayer; Christine E. Seidman; Jonathan G. Seidman; Yufeng Shen; Michael Wagner; H. Joseph Yost; Mark Yandell; Martin Tristani-Firouzi
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errSave
Simultaneous determination of cations in nuclear power plant water by conductometric ion chromatography equipped with fluorescence detector
errJOURNAL OF CHROMATOGRAPHY A
IF4
err2025-07-01
err0
PREAI
errHuang, Wen; Li, Xiaoting; Zhang, Feifang; Shen, Yufeng; Yang, Bingcheng
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Disrupted endosomal trafficking of the Vangl-Celsr polarity complex underlies congenital anomalies in Xenopus trachea-esophageal morphogenesis
errDevelopmental Cell
IF8.7
err2025-05-23
err0
errOAAI
errNicole A. Edwards; Scott A. Rankin; Adhish Kashyap; Alissa Warren; Zachary N. Agricola; Alan P. Kenny; Matthew Kofron; Yufeng Shen; Wendy K. Chung; Aaron M. Zorn
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errSave
A probabilistic graphical model for estimating selection coefficients of nonsynonymous variants from human population sequence data
errNATURE COMMUNICATIONS
IF15.7
err2025-05-20
err0
errOAAI
errZhao, Yige; Lan, Tian; Zhong, Guojie; Hagen, Jake; Pan, Hongbing; Chung, Wendy K.; Shen, Yufeng
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The active metabolite of Epimedii Folium promotes hippocampal neurogenesis in APP/PS1 mice by alleviating mitochondrial dysfunction
errFRONTIERS IN PHARMACOLOGY
IF4.8
err2025-04-25
err0
errOAAI
errBai, Jia-Ming; Li, Tong; Di, Xue; Yang, Jing-Xian; Cui, Zhao-Qi; Min, Dong-Yu; Shen, Yu-Feng; Shan, Si-Yu; Zhang, Ye-Xin; Shi, Yi-Jun; Xu, Zhi-Li; Dou, De-Qiang; Xiao, Hong-He
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A hyperbranched anion exchanger obtained by carboxylate surface modified polymer substrate for ion chromatography
errJOURNAL OF CHROMATOGRAPHY A
IF4
err2025-04-01
err0
PREAI
errShen, Yufeng; Zhu, Xiaomei; Zhang, Feifang; Yang, Bingcheng
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errSave
New use of praziquantel as a broad-spectrum anti-parasitic agent in blocking MSRV infection
errAQUACULTURE
IF3.9
err2025-02-01
err0
PREAI
errZhang, Xu; Wang, Huan; Wang, Zixuan; Shan, Lipeng; Shen, Yufeng; He, Jinjun; Liu, Lei; Hu, Yang; Chen, Jiong
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errSave
Systematic Survey and Analysis Reveal Jasmonate ZIM-Domain Gene Family in Coix lacryma-jobi Under High Temperature
errPLANTS-BASEL
IF4.1
err2024-11-17
err0
errOAAI
errYu, Zhenming; Shen, Yufeng; Sun, Yiming; Xu, Zhangting; Zheng, Feixiong; Shen, Xiaoxia
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errSave
Immune profiling of donor and recipient γδ T cells after human intestinal transplantation reveals their roles in lymphohematopoietic graft-versus-host responses and graft rejection
errTRANSPLANTATION
IF5
err2024-09-16
err0
PREAI
errSuek, Nathan; Crosby, Kevin; Long, Katherine D.; Young, Tyla; Wang, Zicheng; Muntnich, Constanza Bay; Gorur, Alaka; Jiao, Wenyu; Jones, Rebecca; Yan, Qi; Shen, Yufeng; Stawani, Prakash; Weiner, Joshua; Martinez, Mercedes; Kato, Tomoaki; Fu, Jianing
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errSave
Reference-informed prediction of alternative splicing and splicing-altering mutations from sequences
errGENOME RESEARCH
IF5.5
err2024-07-26
err1
errOAAI
errXu, Chencheng; Bao, Suying; Wang, Ye; Li, Wenxing; Chen, Hao; Shen, Yufeng; Jiang, Tao; Zhang, Chaolin
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Homozygous missense variants in YKT6 result in loss of function and are associated with developmental delay, with or without severe infantile liver disease and risk for hepatocellular carcinoma
errGENETICS IN MEDICINE
IF6.2
err2024-07-01
err0
PREAI
errMa, Mengqi; Ganapathi, Mythily; Zheng, Yiming; Tan, Kai-Li; Kanca, Oguz; Bove, Kevin E.; Quintanilla, Norma; Sag, Sebnem O.; Temel, Sehime G.; LeDuc, Charles A.; McPartland, Amanda J.; Pereira, Elaine M.; Shen, Yufeng; Hagen, Jacob; Thomas, Christie P.; Galvan, Nhu Thao Nguyen; Pan, Xueyang; Lu, Shenzhao; Rosenfeld, Jill A.; Calame, Daniel G.; Wangler, Michael F.; Lupski, James R.; Pehlivan, Davut; Hertel, Paula M.; Chung, Wendy K.; Bellen, Hugo J.
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Dynamic establishment of recipient resident memory T cell repertoire after human intestinal transplantation
errEBIOMEDICINE
IF10.8
err2024-03-01
err3
errOAAI
errJiao, Wenyu; Martinez, Mercedes; Muntnich, Constanza Bay; Zuber, Julien; Parks, Christopher; Obradovic, Aleksandar; Tian, Guangyao; Wang, Zicheng; Long, Katherine D.; Waffarn, Elizabeth; Frangaj, Kristjana; Jones, Rebecca; Gorur, Alaka; Shonts, Brittany; Rogers, Kortney; Lv, Guoyue; Velasco, Monica; Ravella, Shilpa; Weiner, Joshua; Kato, Tomoaki; Shen, Yufeng; Fu, Jianing; Sykes, Megan
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Functional dissection of human cardiac enhancers and noncoding de novo variants in congenital heart disease
errNATURE GENETICS
IF31.8
err2024-02-20
err7
errOAAI
errXiao, Feng; Zhang, Xiaoran; Morton, Sarah U.; Kim, Seong Won; Fan, Youfei; Gorham, Joshua M.; Zhang, Huan; Berkson, Paul J.; Mazumdar, Neil; Cao, Yangpo; Chen, Jian; Hagen, Jacob; Liu, Xujie; Zhou, Pingzhu; Richter, Felix; Shen, Yufeng; Ward, Tarsha; Gelb, Bruce D.; Seidman, Jonathan G.; Seidman, Christine E.; Pu, William T.
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Rescuing lung development through embryonic inhibition of histone acetylation
errSCIENCE TRANSLATIONAL MEDICINE
IF14.6
err2024-01-31
err3
errOAAI
errStokes, Giangela; Li, Zhuowei; Talaba, Nicole; Genthe, William; Brix, Maria B.; Pham, Betty; Wienhold, Mark D.; Sandok, Gracia; Hernan, Rebecca; Wynn, Julia; Tang, Haiyang; Tabima, Diana M.; Rodgers, Allison; Hacker, Timothy A.; Chesler, Naomi C.; Zhang, Pan; Murad, Rabi; Yuan, Jason X. -J.; Shen, Yufeng; Chung, Wendy K.; Mcculley, David J.
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Research Directions

No research directions
Co-authors
Cooperation Journals
M
Mark J. Daly
H-index: 224 · Papers: 1.2K
E
Evan E. Eichler
H-index: 191 · Papers: 864
R
Richard A. Gibbs
H-index: 190 · Papers: 1.3K
M
Marc Humbert
H-index: 177 · Papers: 2.2K
H
Håkon Håkonarson
H-index: 177 · Papers: 1.5K
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