Not logged inLong-read sequencing transcriptome quantification with lr-kallisto
Loving, Rebekah K.; Sullivan, Delaney K.; Reese, Fairlie; Rebboah, Elisabeth; Sakr, Jasmine; Rezaie, Narges; Liang, Heidi Y.; Filimban, Ghassan; Kawauchi, Shimako; Booeshaghi, A. Sina; Melsted, Pall; Oakes, Conrad; Trout, Diane; Williams, Brian A.; MacGregor, Grant R.; Wold, Barbara J.; Mortazavi, Ali; Pachter, Lior .png)
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SaveBi-allelic variants in BRF2 are associated with perinatal death and craniofacial anomaliesMattioli, Francesca; Fridriksdottir, Run; Hebert, Anne; Bassani, Sissy; Ibrahim, Nazia; Naz, Shagufta; Chrast, Jacqueline; Pailler-Pradeau, Clara; Oddsson, Asmundur; Sulem, Patrick; Halldorsson, Gisli H.; Melsted, Pall; Guobjartsson, Daniel F.; Palombo, Flavia; Pippucci, Tommaso; Nouri, Nayereh; Seri, Marco; Farrow, Emily G.; Saunders, Carol J.; Guex, Nicolas; Ansar, Muhammad; Stefansson, Kari; Reymond, Alexandre Share Save Transformers significantly improve splice site prediction (vol 7, 1616, 2024)Jonsson, Benedikt A.; Halldorsson, Gisli H.; Ardal, Steinthor; Roegnvaldsson, Soelvi; Einarsson, Eythor; Sulem, Patrick; Guobjartsson, Daniel F.; Melsted, Pall; Stefansson, Kari; Ulfarsson, Magnus Share Save Share Save Transformers significantly improve splice site predictionJonsson, Benedikt A.; Halldorsson, Gisli H.; Ardal, Steinpor; Rognvaldsson, Solvi; Einarsson, Eypor; Sulem, Patrick; Guobjartsson, Daniel F.; Melsted, Pall; Stefansson, Kari; Ulfarsson, Magnus O. Share Save A genome-wide association meta-analysis links hidradenitis suppurativa to common and rare sequence variants causing disruption of the Notch and Wnt/β-catenin signaling pathwaysAndersen, Rune Kjaersgaard; Stefansdottir, Lilja; Riis, Peter Theut; Halldorsson, Gisli; Ferkingstad, Egil; Oddsson, Asmundur; Walters, Bragi; Olafsdottir, Thorunn A.; Rutsdottir, Gudrun; Zachariae, Claus; Thomsen, Simon Francis; Brodersen, Thortsen; Dinh, Khoa Manh; Knowlton, Kirk U.; Knight, Stacey; Nadauld, Lincoln D.; Banasik, Karina; Brunak, Soren; Hansen, Thomas Folkmann; Hjalgrim, Henrik; Sorensen, Erik; Mikkelsen, Chirstina; Ullum, Henrik; Nyegaard, Mette; Bruun, Mie Topholm; Erikstrup, Christian; Ostrowski, Sisse Rye; Eidsmo, Liv; Saunte, Ditte Marie Lindhardt; Sigurgeirsson, Bardur; Orvar, Kjartar B.; Saemundsdottir, Jona; Melsted, Pall; Norddahl, Gudmundur L.; Sulem, Patrick; Stefansson, Hreinn; Holm, Hilma; Gudbjartsson, Daniel; Thorleifsson, Gudmar; Jonsdottir, Ingileif; Pedersen, Ole Birger Vesterager; Jemec, Gregor Borut Ernst; Stefansson, Kari Share Save Gene-based burden tests of rare germline variants identify six cancer susceptibility genesIvarsdottir, Erna V.; Gudmundsson, Julius; Tragante, Vinicius; Sveinbjornsson, Gardar; Kristmundsdottir, Snaedis; Stacey, Simon N.; Halldorsson, Gisli H.; Magnusson, Magnus I.; Oddsson, Asmundur; Walters, G. Bragi; Sigurdsson, Asgeir; Saevarsdottir, Saedis; Beyter, Doruk; Thorleifsson, Gudmar; Halldorsson, Bjarni V.; Melsted, Pall; Stefansson, Hreinn; Jonsdottir, Ingileif; Sorensen, Erik; Pedersen, Ole B.; Erikstrup, Christian; Bogsted, Martin; Pohl, Mette; Roder, Andreas; Stroomberg, Hein Vincent; Goegenur, Ismail; Hillingso, Jens; Bojesen, Stig E.; Lassen, Ulrik; Hogdall, Estrid; Ullum, Henrik; Brunak, Soren; Ostrowski, Sisse R.; Pedersen, Ole Birger; Sonderby, Ida Elken; Frei, Oleksandr; Djurovic, Srdjan; Havdahl, Alexandra; Moller, Pal; Dominguez-Valentin, Mev; Haavik, Jan; Andreassen, Ole A.; Hovig, Eivind; Agnarsson, Bjarni A.; Hilmarsson, Rafn; Johannsson, Oskar Th.; Valdimarsson, Trausti; Jonsson, Steinn; Moller, Pall H.; Olafsson, Jon H.; Sigurgeirsson, Bardur; Jonasson, Jon G.; Tryggvason, Geir; Holm, Hilma; Sulem, Patrick; Rafnar, Thorunn; Gudbjartsson, Daniel F.; Stefansson, Kari Share Save kallisto, bustools and kb-python for quantifying bulk, single-cell and single-nucleus RNA-seqSullivan, Delaney K.; Min, Kyung Hoi (Joseph); Hjorleifsson, Kristjan Eldjarn; Luebbert, Laura; Holley, Guillaume; Moses, Lambda; Gustafsson, Johan; Bray, Nicolas L.; Pimentel, Harold; Booeshaghi, A. Sina; Melsted, Pall; Pachter, Lior Share Save Homozygosity for a stop-gain variant in CCDC201 causes primary ovarian insufficiencyOddsson, Asmundur; Steinthorsdottir, Valgerdur; Oskarsson, Gudjon R.; Styrkarsdottir, Unnur; Moore, Kristjan H. S.; Isberg, Salvor; Halldorsson, Gisli H.; Sveinbjornsson, Gardar; Westergaard, David; Nielsen, Henriette Svarre; Fridriksdottir, Run; Jensson, Brynjar O.; Arnadottir, Gudny A.; Jonsson, Hakon; Sturluson, Arni; Snaebjarnarson, Audunn S.; Andreassen, Ole A.; Walters, G. Bragi; Nyegaard, Mette; Erikstrup, Christian; Steingrimsdottir, Thora; Lie, Rolv T.; Melsted, Pall; Jonsdottir, Ingileif; Halldorsson, Bjarni V.; Thorleifsson, Gudmar; Saemundsdottir, Jona; Magnusson, Olafur Th.; Banasik, Karina; Sorensen, Erik; Masson, Gisli; Pedersen, Ole Birger; Tryggvadottir, Laufey; Haavik, Jan; Ostrowski, Sisse Rye; Stefansson, Hreinn; Holm, Hilma; Rafnar, Thorunn; Gudbjartsson, Daniel F.; Sulem, Patrick; Stefansson, Kari Share Save Start codon variant in LAG3 is associated with decreased LAG-3 expression and increased risk of autoimmune thyroid diseaseSaevarsdottir, Saedis; Bjarnadottir, Kristbjorg; Markusson, Thorsteinn; Berglund, Jonas; Olafsdottir, Thorunn A.; Halldorsson, Gisli H.; Rutsdottir, Gudrun; Gunnarsdottir, Kristbjorg; Arnthorsson, Asgeir Orn; Lund, Sigrun H.; Stefansdottir, Lilja; Gudmundsson, Julius; Johannesson, Ari J.; Sturluson, Arni; Oddsson, Asmundur; Halldorsson, Bjarni; Ludviksson, Bjorn R.; Ferkingstad, Egil; Ivarsdottir, Erna V.; Sveinbjornsson, Gardar; Grondal, Gerdur; Masson, Gisli; Eldjarn, Grimur Hjorleifsson; Thorisson, Gudmundur A.; Kristjansdottir, Katla; Knowlton, Kirk U.; Moore, Kristjan H. S.; Gudjonsson, Sigurjon A.; Rognvaldsson, Solvi; Knight, Stacey; Nadauld, Lincoln D.; Holm, Hilma; Magnusson, Olafur T.; Sulem, Patrick; Gudbjartsson, Daniel F.; Rafnar, Thorunn; Thorleifsson, Gudmar; Melsted, Pall; Norddahl, Gudmundur L.; Jonsdottir, Ingileif; Stefansson, Kari Share Save Genetics and epidemiology of mutational barcode-defined clonal hematopoiesisStacey, Simon N.; Zink, Florian; Halldorsson, Gisli H.; Stefansdottir, Lilja; Gudjonsson, Sigurjon A.; Einarsson, Gudmundur; Hjorleifsson, Grimur; Eiriksdottir, Thjodbjorg; Helgadottir, Anna; Bjornsdottir, Gyda; Thorgeirsson, Thorgeir E.; Olafsdottir, Thorunn A.; Jonsdottir, Ingileif; Gretarsdottir, Solveig; Tragante, Vinicius; Magnusson, Magnus K.; Jonsson, Hakon; Gudmundsson, Julius; Olafsson, Sigurgeir; Holm, Hilma; Gudbjartsson, Daniel F.; Sulem, Patrick; Helgason, Agnar; Thorsteinsdottir, Unnur; Tryggvadottir, Laufey; Rafnar, Thorunn; Melsted, Pall; Ulfarsson, Magnus O.; Vidarsson, Brynjar; Thorleifsson, Gudmar; Stefansson, Kari Share Save Rare variants with large effects provide functional insights into the pathology of migraine subtypes, with and without auraBjornsdottir, Gyda; Chalmer, Mona A.; Stefansdottir, Lilja; Skuladottir, Astros Th.; Einarsson, Gudmundur; Andresdottir, Margret; Beyter, Doruk; Ferkingstad, Egil; Gretarsdottir, Solveig; Halldorsson, Bjarni V.; Halldorsson, Gisli H.; Helgadottir, Anna; Helgason, Hannes; Eldjarn, Grimur Hjorleifsson; Jonasdottir, Adalbjorg; Jonasdottir, Aslaug; Jonsdottir, Ingileif; Knowlton, Kirk U.; Nadauld, Lincoln D.; Lund, Sigrun H.; Magnusson, Olafur Th.; Melsted, Pall; Moore, Kristjan H. S.; Oddsson, Asmundur; Olason, Pall I.; Sigurdsson, Asgeir; Stefansson, Olafur A.; Saemundsdottir, Jona; Sveinbjornsson, Gardar; Tragante, Vinicius; Unnsteinsdottir, Unnur; Walters, G. Bragi; Zink, Florian; Rodevand, Linn; Andreassen, Ole A.; Igland, Jannicke; Lie, Rolv T.; Haavik, Jan; Banasik, Karina; Brunak, Soren; Didriksen, Maria; Bruun, Mie T.; Erikstrup, Christian; Kogelman, Lisette J. A.; Nielsen, Kaspar R.; Sorensen, Erik; Pedersen, Ole B.; Ullum, Henrik; Masson, Gisli; Thorsteinsdottir, Unnur; Olesen, Jes; Ludvigsson, Petur; Thorarensen, Olafur; Bjornsdottir, Anna; Sigurdardottir, Gudrun R.; Sveinsson, Olafur A.; Ostrowski, Sisse R.; Holm, Hilma; Gudbjartsson, Daniel F.; Thorleifsson, Gudmar; Sulem, Patrick; Stefansson, Hreinn; Thorgeirsson, Thorgeir E.; Hansen, Thomas F.; Stefansson, Kari Share Save Sequence variant affects GCSAML splicing, mast cell specific proteins, and risk of urticariaKristjansson, Ragnar. P. P.; Oskarsson, Gudjon. R. R.; Skuladottir, Astros; Oddsson, Asmundur; Rognvaldsson, Solvi; Sveinbjornsson, Gardar; Lund, Sigrun. H. H.; Jensson, Brynjar. O. O.; Styrmisdottir, Edda. L. L.; Halldorsson, Gisli. H. H.; Ferkingstad, Egil; Eldjarn, Grimur Hjorleifsson; Beyter, Doruk; Kristmundsdottir, Snaedis; Juliusson, Kristinn; Fridriksdottir, Run; Arnadottir, Gudny. A. A.; Katrinardottir, Hildigunnur; Snorradottir, Margret. H. H.; Tragante, Vinicius; Stefansdottir, Lilja; Ivarsdottir, Erna. V. V.; Bjornsdottir, Gyda; Halldorsson, Bjarni. V. V.; Thorleifsson, Gudmar; Ludviksson, Bjorn. R. R.; Onundarson, Pall. T. T.; Saevarsdottir, Saedis; Melsted, Pall; Norddahl, Gudmundur. L. L.; Bjornsdottir, Unnur. S. S.; Olafsdottir, Thorunn; Gudbjartsson, Daniel. F. F.; Thorsteinsdottir, Unnur; Jonsdottir, Ingileif; Sulem, Patrick; Stefansson, Kari Share Save Multiomics study of nonalcoholic fatty liver diseaseSveinbjornsson, Gardar; Ulfarsson, Magnus O.; Thorolfsdottir, Rosa B.; Jonsson, Benedikt A.; Einarsson, Eythor; Gunnlaugsson, Gylfi; Rognvaldsson, Solvi; Arnar, David O.; Baldvinsson, Magnus; Bjarnason, Ragnar G.; Eiriksdottir, Thjodbjorg; Erikstrup, Christian; Ferkingstad, Egil; Halldorsson, Gisli H.; Helgason, Hannes; Helgadottir, Anna; Hindhede, Lotte; Hjorleifsson, Grimur; Jones, David; Knowlton, Kirk U.; Lund, Sigrun H.; Melsted, Pall; Norland, Kristjan; Olafsson, Isleifur; Olafsson, Sigurdur; Oskarsson, Gudjon R.; Ostrowski, Sisse Rye; Pedersen, Ole Birger; Snaebjarnarson, Audunn S.; Sigurdsson, Emil; Steinthorsdottir, Valgerdur; Schwinn, Michael; Thorgeirsson, Gudmundur; Thorleifsson, Gudmar; Jonsdottir, Ingileif; Bundgaard, Henning; Nadauld, Lincoln; Bjornsson, Einar S.; Rulifson, Ingrid C.; Rafnar, Thorunn; Norddahl, Gudmundur L.; Thorsteinsdottir, Unnur; Sulem, Patrick; Gudbjartsson, Daniel F.; Holm, Hilma; Stefansson, Kari Share Save Effect of booster vaccination against Delta and Omicron SARS-CoV-2 variants in IcelandNorddahl, Gudmundur L.; Melsted, Pall; Gunnarsdottir, Kristbjorg; Halldorsson, Gisli H.; Olafsdottir, Thorunn A.; Gylfason, Arnaldur; Kristjansson, Mar; Magnusson, Olafur T.; Sulem, Patrick; Gudbjartsson, Daniel F.; Thorsteinsdottir, Unnur; Jonsdottir, Ingileif; Stefansson, Kari Share Save HLA alleles, disease severity, and age associate with T-cell responses following infection with SARS-CoV-2Olafsdottir, Thorunn A.; Bjarnadottir, Kristbjorg; Norddahl, Gudmundur L.; Halldorsson, Gisli H.; Melsted, Pall; Gunnarsdottir, Kristbjorg; Ivarsdottir, Erna; Olafsdottir, Thorhildur; Arnthorsson, Asgeir O.; Theodors, Fannar; Eythorsson, Elias; Helgason, Dadi; Eggertsson, Hannes P.; Masson, Gisli; Bjarnadottir, Solveig; Saevarsdottir, Saedis; Runolfsdottir, Hrafnhildur L.; Olafsson, Isleifur; Saemundsdottir, Jona; Sigurdsson, Martin, I; Ingvarsson, Ragnar F.; Palsson, Runolfur; Thorgeirsson, Gudmundur; Halldorsson, Bjarni, V; Holm, Hilma; Kristjansson, Mar; Sulem, Patrick; Thorsteinsdottir, Unnur; Jonsdottir, Ingileif; Gudbjartsson, Daniel F.; Stefansson, Kari Share Save Reconstruction of a large-scale outbreak of SARS-CoV-2 infection in Iceland informs vaccination strategiesHjorleifsson, Kristjan E.; Rognvaldsson, Solvi; Jonsson, Hakon; Agustsdottir, Arna B.; Andresdottir, Margret; Birgisdottir, Kolbrun; Eiriksson, Ogmundur; Eythorsson, Elias S.; Fridriksdottir, Run; Georgsson, Gudmundur; Gudmundsson, Kjartan R.; Gylfason, Arnaldur; Haraldsdottir, Gudbjorg; Jensson, Brynjar O.; Jonasdotti, Adalbjorg; Jonasdottir, Aslaug; Josefsdottir, Kamilla S.; Kristinsdottir, Nina; Kristjansdottir, Borghildur; Kristjansson, Thordur; Magnusdottir, Droplaug N.; Palsson, Runolfur; le Roux, Louise; Sigurbergsdottir, Gudrun M.; Sigurdsson, Asgeir; Sigurdsson, Martin, I; Sveinbjornsson, Gardar; Thorarensen, Emil Aron; Thorbjornsson, Bjarni; Thordardottir, Marianna; Helgason, Agnar; Holm, Hilma; Jonsdottir, Ingileif; Jonsson, Frosti; Magnusson, Olafur T.; Masson, Gisli; Norddahl, Gudmundur L.; Saemundsdottir, Jona; Sulem, Patrick; Thorsteinsdottir, Unnur; Gudbjartsson, Daniel F.; Melsted, Pall; Stefansson, Kari Share Save Large-scale integration of the plasma proteome with genetics and diseaseFerkingstad, Egil; Sulem, Patrick; Atlason, Bjarni A.; Sveinbjornsson, Gardar; Magnusson, Magnus I.; Styrmisdottir, Edda L.; Gunnarsdottir, Kristbjorg; Helgason, Agnar; Oddsson, Asmundur; Halldorsson, Bjarni V.; Jensson, Brynjar O.; Zink, Florian; Halldorsson, Gisli H.; Masson, Gisli; Arnadottir, Gudny A.; Katrinardottir, Hildigunnur; Juliusson, Kristinn; Magnusson, Magnus K.; Magnusson, Olafur Th.; Fridriksdottir, Run; Saevarsdottir, Saedis; Gudjonsson, Sigurjon A.; Stacey, Simon N.; Rognvaldsson, Solvi; Eiriksdottir, Thjodbjorg; Olafsdottir, Thorunn A.; Steinthorsdottir, Valgerdur; Tragante, Vinicius; Ulfarsson, Magnus O.; Stefansson, Hreinn; Jonsdottir, Ingileif; Holm, Hilma; Rafnar, Thorunn; Melsted, Pall; Saemundsdottir, Jona; Norddahl, Gudmundur L.; Lund, Sigrun H.; Gudbjartsson, Daniel F.; Thorsteinsdottir, Unnur; Stefansson, Kari Share Save Genetic variants associated with platelet count are predictive of human disease and physiological markersMikaelsdottir, Evgenia; Thorleifsson, Gudmar; Stefansdottir, Lilja; Halldorsson, Gisli; Sigurdsson, Jon K.; Lund, Sigrun H.; Tragante, Vinicius; Melsted, Pall; Rognvaldsson, Solvi; Norland, Kristjan; Helgadottir, Anna; Magnusson, Magnus K.; Ragnarsson, Gunnar B.; Kristinsson, Sigurdur Y.; Reykdal, Sigrun; Vidarsson, Brynjar; Gudmundsdottir, Ingibjorg J.; Olafsson, Isleifur; Onundarson, Pall T.; Sigurdardottir, Olof; Sigurdsson, Emil L.; Grondal, Gerdur; Geirsson, Arni J.; Geirsson, Gudmundur; Gudmundsson, Julius; Holm, Hilma; Saevarsdottir, Saedis; Jonsdottir, Ingileif; Thorgeirsson, Gudmundur; Gudbjartsson, Daniel F.; Thorsteinsdottir, Unnur; Rafnar, Thorunn; Stefansson, Kari Share Save Molecular benchmarks of a SARS-CoV-2 epidemicJonsson, Hakon; Magnusson, Olafur T.; Melsted, Pall; Berglund, Jonas; Agustsdottir, Arna B.; Eiriksdottir, Berglind; Fridriksdottir, Run; Garoarsdottir, Elisabet Eir; Georgsson, Gudmundur; Gretarsdottir, Olafia S.; Guomundsson, Kjartan R.; Gunnarsdottir, Thora Rosa; Eggertsson, Hannes; Gylfason, Arnaldur; Holm, Hilma; Jensson, Brynjar O.; Jonasdottir, Aslaug; Jonsson, Frosti; Josefsdottir, Kamilla S.; Thordardottir, Marianna; Kristinsson, Karl G.; Kristjansson, Thorour; Magnusdottir, Droplaug N.; Le Roux, Louise; Saemundsdottir, Jona; Sigurdsson, Asgeir; Sigmundsdottir, Gudrun; Sveinbjornsson, Gardar; Rognvaldsson, Solvi; Eiriksson, Ogmundur; Magnusson, Magnus Karl; Sveinsdottir, Kristin Eva; Sveinsdottir, Maney; Thorarensen, Emil Aron; Thorbjornsson, Bjarni; Love, Arthur; Norddahl, Gudmundur L.; Jonsdottir, Ingileif; Sulem, Patrick; Masson, Gisli; Moller, Alma; Gudnason, Thorolfur; Kristjansson, Mar; Helgason, Agnar; Gudbjartsson, Daniel F.; Thorsteinsdottir, Unnur; Stefansson, Kari Share Save 
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