arrow
Back
C

Chris Daum

Lawrence Berkeley National Laboratory

37H-index
186Paper Count
4.4KCitation Count
Published Papers 74
Publication Date
Phenogenomics reveals the ecology and evolution of Trichoderma fungi for sustainable agriculture
err2026-03-03
err0
errOAAI
errAndrei S. Steindorff; Feng M. Cai; Mingyue Ding; Siqi Jiang; Lea Atanasova; Scott E. Baker; Jomal Rodrigues Barbosa-Filho; Gunseli Bayram Akcapinar; Daren W. Brown; Priscila Chaverri; Peijie Chen; Komal Chenthamara; Chris Daum; Elodie Drula; Mukesh Dubey; Mikael Brandström Durling; Daniel Flatschacher; Thomas Ebner; Tamás Emri; Renwei Gao; Raphaela Castro Georg; Bernard Henrissat; Rosa Hermosa; Alfredo Herrera-Estrella; Wolfgang Hinterdobler; Philipp Kainz; Magnus Karlsson; László Kredics; Christian P. Kubicek; Alan Kuo; Kurt LaButti; Anna Lipzen; Matteo Lorito; Robert L. Mach; Gelsomina Manganiello; Tamás Marik; Natalia Martinez-Reyes; Michael Mayrhofer-Reinhartshuber; Márton Miskei; Marie-Claude Moisan; Stephen Mondo; Enrique Monte; Vivian Ng; Guan Pang; Jasmyn Pangilinan; Mao Peng; Edoardo Piombo; István Pócsi; Mohammad Javad Rahimi; Sumitha K. Reddy; Robert Riley; Sabrina Sarrocco; Matthias Schmal; Monika Schmoll; Attila Szűcs; Sheridan L. Woo; Oded Yarden; Susanne Zeilinger; Christian Zimmermann; Ekaterina Shelest; Adrian Tsang; Randy Berka; Ronald P. de Vries; Igor V. Grigoriev; Irina S. Druzhinina
errShare
errSave
Draft genome sequence of Gleimia europaea DSM 26657
err2025-11-01
err0
PREAI
errSoghomonian, Angela; Soghomonian, Mark; Spunde, Alex; Daum, Chris; Gronow, Sabine; Goker, Markus; Seshadri, Rekha; Maitra, Kalyani
errShare
errSave
The genomic footprints of wild Saccharum species trace domestication, diversification, and modern breeding of sugarcane
errCell
IF42.5
err2025-10-14
err0
errOAAI
errOlivier Garsmeur; Simon Rio; Nicolas Pompidor; Anna Lipzen; Catherine Hervouet; Théo Durand; Chris Daum; Yuko Yoshinaga; Mike Butterfield; Alexander Sanchez; George Piperidis; Noa Lincoln; Anna Hale; Jean Yves Hoarau; Yoshifumi Terajima; Prakash Lakshmanan; Erik Sacks; Shailendra Sharma; Marotea Vitrac; Kerrie Barry; Jeremy Schmutz; Angélique D’Hont
errShare
errSave
Recruitment, rewiring and deep conservation in flowering plant gene regulation
err2025-07-15
err0
PREAI
errLeo A. Baumgart; Sharon I. Greenblum; Abraham Morales-Cruz; Peng Wang; Yu Zhang; Lin Yang; Cindy Chen; David J. Dilworth; Alexis C. Garretson; Nicolas Grosjean; Guifen He; Emily Savage; Yuko Yoshinaga; Ian K. Blaby; Chris G. Daum; Ronan C. O’Malley
errShare
errSave
Section-level genome sequencing and comparative genomics of Aspergillus sections Cavernicolus and Usti
err2025-01-01
err0
PREAI
errNybo, J. L.; Vesth, T. C.; Theobald, S.; Frisvad, J. C.; Larsen, T. O.; Kjaerboelling, I.; Rothschild-Mancinelli, K.; Lyhne, E. K.; Barry, K.; Clum, A.; Yoshinaga, Y.; Ledsgaard, L.; Daum, C.; Lipzen, A.; Kuo, A.; Riley, R.; Mondo, S.; Labutti, K.; Haridas, S.; Pangalinan, J.; Salamov, A. A.; Simmons, B. A.; Magnuson, J. K.; Chen, J.; Drula, E.; Henrissat, B.; Wiebenga, A.; Lubbers, R. J. M.; Muller, A.; Gomes, A. C. dos Santos; Makela, M. R.; Stajich, J. E.; Grigorie, I., V; Mortensen, U. H.; Andersen, M. R.
errShare
errSave
Allopolyploidy expanded gene content but not pangenomic variation in the hexaploid oilseed Camelina sativa
err2024-11-15
err2
errOAAI
errBird, Kevin A.; Brock, Jordan R.; Grabowski, Paul P.; Harder, Avril M.; Healy, Adam L.; Shu, Shengqiang; Barry, Kerrie; Boston, Loribeth; Daum, Christopher; Guo, Jie; Lipzen, Anna; Walstead, Rachel; Grimwood, Jane; Schmutz, Jeremy; Lu, Chaofu; Comai, Luca; Mckay, John K.; Pires, J. Chris; Edger, Patrick P.; Lovell, John T.; Kliebenstein, Daniel J.
errShare
errSave
Genomes of multicellular algal sisters to land plants illuminate signaling network evolution
err2024-05-01
err20
errOAAI
errFeng, Xuehuan; Zheng, Jinfang; Irisarri, Iker; Yu, Huihui; Zheng, Bo; Ali, Zahin; de Vries, Sophie; Keller, Jean; Fuerst-Jansen, Janine M. R.; Dadras, Armin; Zegers, Jaccoline M. S.; Rieseberg, Tim P.; Dhabalia Ashok, Amra; Darienko, Tatyana; Bierenbroodspot, Maaike J.; Gramzow, Lydia; Petroll, Romy; Haas, Fabian B.; Fernandez-Pozo, Noe; Nousias, Orestis; Li, Tang; Fitzek, Elisabeth; Grayburn, W. Scott; Rittmeier, Nina; Permann, Charlotte; Ruempler, Florian; Archibald, John M.; Theissen, Guenter; Mower, Jeffrey P.; Lorenz, Maike; Buschmann, Henrik; von Schwartzenberg, Klaus; Boston, Lori; Hayes, Richard D.; Daum, Chris; Barry, Kerrie; Grigoriev, Igor V.; Wang, Xiyin; Li, Fay-Wei; Rensing, Stefan A.; Ben Ari, Julius; Keren, Noa; Mosquna, Assaf; Holzinger, Andreas; Delaux, Pierre-Marc; Zhang, Chi; Huang, Jinling; Mutwil, Marek; de Vries, Jan; Yin, Yanbin
errShare
errSave
On the origin of bird's nest fungi: Phylogenomic analyses of fungi in the Nidulariaceae (Agaricales, Basidiomycota)
err2024-04-01
err5
PREAI
errKraisitudomsook, Nattapol; Ahrendt, Steven; Riley, Robert; Labutti, Kurt; Lipzen, Anna; Daum, Chris; Barry, Kerrie; Grigoriev, Igor, V; Rama, Teppo; Martin, Francis; Smith, Matthew E.
errShare
errSave
Major impacts of widespread structural variation on sorghum
err2024-03-13
err1
errOAAI
errZhang, Zhihai; Gomes Viana, Joao Paulo; Zhang, Bosen; Walden, Kimberly K. O.; Mueller Paul, Hans; Moose, Stephen P.; Morris, Geoffrey P.; Daum, Chris; Barry, Kerrie W.; Shakoor, Nadia; Hudson, Matthew E.
errShare
errSave
A large sequenced mutant library - valuable reverse genetic resource that covers 98% of sorghum genes
err2023-12-15
err8
errOAAI
errJiao, Yinping; Nigam, Deepti; Barry, Kerrie; Daum, Chris; Yoshinaga, Yuko; Lipzen, Anna; Khan, Adil; Parasa, Sai-Praneeth; Wei, Sharon; Lu, Zhenyuan; Tello-Ruiz, Marcela K.; Dhiman, Pallavi; Burow, Gloria; Hayes, Chad; Chen, Junping; Brandizzi, Federica; Mortimer, Jenny; Ware, Doreen; Xin, Zhanguo
errShare
errSave
Genome-scale phylogeny and comparative genomics of the fungal order Sordariales
err2023-12-01
err8
errOAAI
errHensen, Noah; Bonometti, Lucas; Westerberg, Ivar; Brannstrom, Ioana Onut; Guillou, Sonia; Cros-Aarteil, Sandrine; Calhoun, Sara; Haridas, Sajeet; Kuo, Alan; Mondo, Stephen; Pangilinan, Jasmyn; Riley, Robert; Labutti, Kurt; Andreopoulos, Bill; Lipzen, Anna; Chen, Cindy; Yan, Mi; Daum, Chris; Ng, Vivian; Clum, Alicia; Steindorff, Andrei; Ohm, Robin A.; Martin, Francis; Silar, Philippe; Natvig, Donald O.; Lalanne, Christophe; Gautier, Valerie; Ament-Velasquezi, Sandra Lorena; Kruys, Asa; Hutchinson, Miriam I.; Powell, Amy Jo; Barry, Kerrie; Miller, Andrew N.; Grigoriev, Igor, V; Debuchy, Robert; Gladieux, Pierre; Thoren, Markus Hiltunen; Johannesson, Hanna
errShare
errSave
The protist Aurantiochytrium has universal subtelomeric rDNAs and is a host for mirusviruses
err2023-12-01
err5
errOAAI
errCollier, Jackie L.; Rest, Joshua S.; Gallot-Lavallee, Lucie; Lavington, Erik; Kuo, Alan; Jenkins, Jerry; Plott, Chris; Pangilinan, Jasmyn; Daum, Chris; Grigoriev, Igor V.; Filloramo, Gina V.; Vanclova, Anna M. G. Novak; Archibald, John M.
errShare
errSave
Comparative genomics of Mollicutes-related endobacteria supports a late invasion into Mucoromycota fungi
err2023-09-18
err3
errOAAI
errLongley, Reid; Robinson, Aaron; Liber, Julian A.; Bryson, Abigail E.; Morales, Demosthenes P.; Labutti, Kurt; Riley, Robert; Mondo, Stephen J.; Kuo, Alan; Yoshinaga, Yuko; Daum, Chris; Barry, Kerrie; Grigoriev, Igor V.; Desiro, Alessandro; Chain, Patrick S. G.; Bonito, Gregory
errShare
errSave
JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
err2023-08-01
err19
errOAAI
errSreedasyam, Avinash; Plott, Christopher; Hossain, Md Shakhawat; Lovell, John T.; Grimwood, Jane; Jenkins, Jerry W.; Daum, Christopher; Barry, Kerrie; Carlson, Joseph; Shu, Shengqiang; Phillips, Jeremy; Amirebrahimi, Mojgan; Zane, Matthew; Wang, Mei; Goodstein, David; Haas, Fabian B.; Hiss, Manuel; Perroud, Pierre-Francois; Jawdy, Sara S.; Yang, Yongil; Hu, Rongbin; Johnson, Jenifer; Kropat, Janette; Gallaher, Sean D.; Lipzen, Anna; Shakirov, Eugene, V; Weng, Xiaoyu; Torres-Jerez, Ivone; Weers, Brock; Conde, Daniel; Pappas, Marilia R.; Liu, Lifeng; Muchlinski, Andrew; Jiang, Hui; Shyu, Christine; Huang, Pu; Sebastian, Jose; Laiben, Carol; Medlin, Alyssa; Carey, Sankalpi; Carrell, Alyssa A.; Chen, Jin-Gui; Perales, Mariano; Swaminathan, Kankshita; Allona, Isabel; Grattapaglia, Dario; Cooper, Elizabeth A.; Tholl, Dorothea; Vogel, John P.; Weston, David J.; Yang, Xiaohan; Brutnell, Thomas P.; Kellogg, Elizabeth A.; Baxter, Ivan; Udvardi, Michael; Tang, Yuhong; Mockler, Todd C.; Juenger, Thomas E.; Mullet, John; Rensing, Stefan A.; Tuskan, Gerald A.; Merchant, Sabeeha S.; Stacey, Gary; Schmutz, Jeremy
errShare
errSave
Overexpression of REDUCED WALL ACETYLATION C increases xylan acetylation and biomass recalcitrance in Populus
err2023-07-03
err15
errOAAI
errZhang, Jin; Wang, Xiaqin; Wang, Hsin-Tzu; Qiao, Zhenzhen; Yao, Tao; Xie, Meng; Urbanowicz, Breeanna R.; Zeng, Wei; Jawdy, Sara S.; Gunter, Lee E.; Yang, Xiaohan; Czarnecki, Olaf; Regan, Sharon; Seguin, Armand; Rottmann, William; Winkeler, Kimberly A.; Sykes, Robert; Lipzen, Anna; Daum, Chris; Barry, Kerrie; Lu, Meng-Zhu; Tuskan, Gerald A.; Muchero, Wellington; Chen, Jin-Gui
errShare
errSave
Genetic determinants of switchgrass- root-associated microbiota in field sites spanning its natural range
err2023-05-01
err17
errOAAI
errEdwards, Joseph A.; Saran, Usha Bishnoi; Bonnette, Jason; MacQueen, Alice; Yin, Jun; Nguyen, Tu Uyen; Schmutz, Jeremy; Grimwood, Jane; Pennacchio, Len A.; Daum, Chris; del Rio, Tijana Glavina; Fritschi, Felix B.; Lowry, David B.; Juenger, Thomas E.
errShare
errSave
A thousand-genome panel retraces the global spread and adaptation of a major fungal crop pathogen
err2023-02-24
err28
errOAAI
errFeurtey, Alice; Lorrain, Cecile; McDonald, Megan C.; Milgate, Andrew; Solomon, Peter S.; Warren, Rachael; Puccetti, Guido; Scalliet, Gabriel; Torriani, Stefano F. F.; Gout, Lilian; Marcel, Thierry C.; Suffert, Frederic; Alassimone, Julien; Lipzen, Anna; Yoshinaga, Yuko; Daum, Christopher; Barry, Kerrie; Grigoriev, Igor V.; Goodwin, Stephen B.; Genissel, Anne; Seidl, Michael F.; Stukenbrock, Eva H.; Lebrun, Marc-Henri; Kema, Gert H. J.; McDonald, Bruce A.; Croll, Daniel
errShare
errSave
Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal Genus Pisolithus
err2023-02-22
err9
errOAAI
errPlett, Jonathan M.; Miyauchi, Shingo; Morin, Emmanuelle; Plett, Krista; Wong-Bajracharya, Johanna; de Freitas Pereira, Maira; Kuo, Alan; Henrissat, Bernard; Drula, Elodie; Wojtalewicz, Dominika; Riley, Robert; Pangilinan, Jasmyn; Andreopoulos, William; LaButti, Kurt; Daum, Chris; Yoshinaga, Yuko; Fauchery, Laure; Ng, Vivian; Lipzen, Anna; Barry, Kerrie; Singan, Vasanth; Guo, Jie; Lebel, Teresa; Costa, Mauricio Dutra; Grigoriev, Igor, V; Martin, Francis; Anderson, Ian C.; Kohler, Annegret
errShare
errSave
Mycoparasites, Gut Dwellers, and Saprotrophs: Phylogenomic Reconstructions and Comparative Analyses of Kickxellomycotina Fungi
err2023-01-07
err5
errOAAI
errReynolds, Nicole K.; Stajich, Jason E.; Benny, Gerald L.; Barry, Kerrie; Mondo, Stephen; LaButti, Kurt; Lipzen, Anna; Daum, Chris; Grigoriev, Igor, V; Ho, Hsiao-Man; Crous, Pedro W.; Spatafora, Joseph W.; Smith, Matthew E.
errShare
errSave
High-throughput identification of novel heat tolerance genes via genome-wide pooled mutant screens in the model green alga Chlamydomonas reinhardtii
err2022-12-24
err4
errOAAI
errMattoon, Erin M.; McHargue, William E.; Bailey, Catherine E.; Zhang, Ningning; Chen, Chen; Eckhardt, James; Daum, Chris G.; Zane, Matt; Pennacchio, Christa; Schmutz, Jeremy; O'Malley, Ronan C.; Cheng, Jianlin; Zhang, Ru
errShare
errSave