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Matthew T. Weirauch

Cincinnati Children's Hospital Medical Center

65H-index
383Paper Count
3.1WCitation Count
Published Papers 147
Publication Date
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An expanded codebook of human transcription factor DNA-binding specificity
errNature
IF48.5
err2026-08-05
err0
errOAAI
errArttu Jolma; Kaitlin U. Laverty; Ali Fathi; Ally W. H. Yang; Isaac Yellan; Ilya E. Vorontsov; Antoni J. Gralak; Judith F. Kribelbauer-Swietek; Sachi Inukai; Rozita Razavi; Mihai Albu; Alexander Brechalov; Zain M. Patel; Vladimir Nozdrin; Georgy Meshcheryakov; Andrey Buyan; Ivan Kozin; Sergey Abramov; Alexandr Boytsov; Quaid Morris; Matthew T. Weirauch; Oriol Fornes; Vsevolod J. Makeev; Jan Grau; Ivo Grosse; Philipp Bucher; Bart Deplancke; Ivan V. Kulakovskiy; Timothy R. Hughes
errShare
errSave
PTPN13 Contributes to Ebola Virus-Induced Immune Dysregulation via Dephosphorylation of IRF3 and PI3K-p85
errViruses
IF3.5
err2026-07-02
err0
errOAAI
errAbbey N. Warren; Maria Gonzalez-Orozco; Ivan Kuzmin; Sreeja Parameswaran; Ruben Soto Acosta; Birte Kalveram; Sarah van Tol; Adam Hage; Padmanava Behera; Yoatzin Peñaflor-Tellez; Maria I. Giraldo; William Russell; Matthew T. Weirauch; Alexander Freiberg; Alexander Bukreyev; Ricardo Rajsbaum
errShare
errSave
Multi-trait Analysis of GWAS Expands Eosinophilic Esophagitis Genetic Susceptibility and Polygenic Risk Scores
errJournal of Allergy and Clinical Immunology
IF11.2
err2026-03-20
err0
PREAI
errMichael P. Trimarchi; Bahram Namjou-Khales; Netali Ben-Baruch Morgenstern; Mark Rochman; Xiaoting Chen; Garrett A. Osswald; John A. Besse; Molly S. Shook; Julie M. Caldwell; Michael Lape; Tetsuo Shoda; Matthew T. Weirauch; Melanie A. Ruffner; Gregory M. Constantine; Lisa J. Martin; Leah C. Kottyan; Marc E. Rothenberg
errShare
errSave
Convergent DNA methylation abnormalities at enhancers and bivalent promoters in human growth disorders
errEpigenetics & Chromatin
IF3.5
err2025-12-27
err0
errOAAI
errMarie E. S. Wheeler; Yoshiko Takahashi; Jihye Lee; Camille T. Perez; Xiaoting Chen; Yuri Lee; Zachary S. Pope; Daniella J. Lu; Marcus Seldin; Ivan Marazzi; Hongseok Yun; Matthew T. Weirauch; Minji Byun
errShare
errSave
Epigenetic and transcriptional programming of murine eosinophils in the esophagus
errNature Communications
IF15.7
err2025-11-25
err0
errOAAI
errJennifer M. Felton; Lee E. Edsall; Ty D. Troutman; Lydia Mack; Michael Kotliar; Netali Ben-Baruch Morgenstern; Annalise M. Psaila; Mark Rochman; Andrea M. Klingler; Garrett A. Osswald; Simin Zhang; Julia L. M. Dunn; Ben Wronowski; Tetsuo Shoda; Julie M. Caldwell; Rana Herro; Artem Barski; Kate G. R. Quinlan; Matthew T. Weirauch; Marc E. Rothenberg
errShare
errSave
Cross-platform motif discovery and benchmarking to explore binding specificities of poorly studied human transcription factors
errCommunications Biology
IF5.1
err2025-11-07
err0
errOAAI
errIlya E. Vorontsov; Ivan Kozin; Sergey Abramov; Alexandr Boytsov; Arttu Jolma; Mihai Albu; Giovanna Ambrosini; Katerina Faltejskova; Antoni J. Gralak; Nikita Gryzunov; Sachi Inukai; Semyon Kolmykov; Pavel Kravchenko; Judith F. Kribelbauer-Swietek; Kaitlin U. Laverty; Vladimir Nozdrin; Zain M. Patel; Dmitry Penzar; Marie-Luise Plescher; Sara E. Pour; Rozita Razavi; Ally W. H. Yang; Ivan Yevshin; Arsenii Zinkevich; Matthew T. Weirauch; Philipp Bucher; Bart Deplancke; Oriol Fornes; Jan Grau; Ivo Grosse; Fedor A. Kolpakov; Vsevolod J. Makeev; Timothy R. Hughes; Ivan V. Kulakovskiy
errShare
errSave
CisBP-RNA: a web resource for eukaryotic RNA-binding proteins and their motifs
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-10-01
err1
errOAAI
errRosado-Tristani, Diego A.; Albu, Mihai; Chen, Xiaoting; Sasse, Alexander; Laverty, Kaitlin U.; Ray, Debashish; Tam, Cyrus L.; Ernst, Kevin; Lawson, Lucinda P.; Morris, Quaid D.; Hughes, Timothy R.; Weirauch, Matthew T.
errShare
errSave
Human cytomegalovirus infection coopts chromatin organization to diminish TEAD1 transcription factor activity
errELIFE
IF0
err2025-09-10
err0
errOAAI
errSayeed, Khund; Parameswaran, Sreeja; Beucler, Matthew J.; Edsall, Lee E.; VonHandorf, Andrew; Crowther, Audrey; Donmez, Omer A.; Hass, Matthew R.; Richards, Scott; Forney, Carmy R.; Hesse, Hayley K.; Jones, Sydney H.; Dunn, Katelyn A.; Wright, Jay; Leong, Merrin Man Long; Murray-Nerger, Laura A.; Yechoor, Vijay; Gewurz, Ben E.; Kaufman, Kenneth M.; Harley, John B.; Zhao, Bo; Miller, William E.; Kottyan, Leah C.; Weirauch, Matthew T.
errShare
errSave
Genome-wide discovery of multiple sclerosis genetic risk variant allelic regulatory activity
errG3-GENES GENOMES GENETICS
IF2.2
err2025-09-01
err0
errOAAI
errGranitto, Marissa; Parks, Lois; Shook, Molly S.; Forney, Carmy; Chen, Xiaoting; Edsall, Lee E.; Donmez, Omer A.; Parameswaran, Sreeja; Fisher, Kristen S.; Zabeti, Aram; Lawson, Lucinda P.; Weirauch, Matthew T.; Kottyan, Leah C.
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errSave
Massively parallel analysis of genotype-dependent enhancer activity among atopic dermatitis genetic risk variants
errJournal of Allergy and Clinical Immunology
IF11.2
err2025-08-20
err0
errOAAI
errMolly S. Shook; Xiaoming Lu; Xiaoting Chen; Lee E. Edsall; Marissa Granitto; Samuel J. Virolainen; Carmy Forney; Omer A. Donmez; Sreeja Parameswaran; Catherine Fadden; Phillip J. Dexheimer; Seth Jenkins; Brittany Grashel; Kenneth M. Kaufman; Gurjit Khurana Hershey; Lisa J. Martin; Latha Satish; Matthew T. Weirauch; Leah C. Kottyan
errShare
errSave
Splicing regulatory dynamics for precision analysis and treatment of heterogeneous leukemias
errSCIENCE TRANSLATIONAL MEDICINE
IF14.6
err2025-05-07
err0
PREAI
errVenkatasubramanian, Meenakshi; Schwartz, Leya; Ramachandra, Nandini; Bennett, Joshua; Subramanian, Krithika R.; Chen, Xiaoting; Gordon-Mitchell, Shanisha; Fromowitz, Ariel; Pradhan, Kith; Shechter, David; Sahu, Srabani; Heiser, Diane; Scherle, Peggy; Chetal, Kashish; Kulkarni, Aishwarya; Lee, Davy; Zhou, Jeff; Myers, Kasiani C.; Tseng, Elizabeth; Weirauch, Matthew T.; Grimes, H. Leighton; Starczynowski, Daniel T.; Verma, Amit; Salomonis, Nathan
errShare
errSave
GDF10 promotes rodent cardiomyocyte maturation during the postnatal period
errJOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY
IF4.7
err2025-04-01
err0
PREAI
errCalderon, Maria Uscategui; Spaeth, Maria L.; Granitto, Marissa; Gonzalez, Brittany A.; Weirauch, Matthew T.; Kottyan, Leah C.; Yutzey, Katherine E.
errShare
errSave
A Single-Cell Transcriptome Atlas of Epithelial Subpopulations in HPV-Positive and HPV-Negative Head and Neck Cancers
errVIRUSES-BASEL
IF3.5
err2025-03-24
err1
errOAAI
errBedard, Mary C.; Rivera-Cruz, Cosette M.; Chihanga, Tafadzwa; VonHandorf, Andrew; Tang, Alice L.; Zender, Chad; Weirauch, Matthew T.; Ferris, Robert; Wise-Draper, Trisha M.; Adam, Mike; Wells, Susanne I.
errShare
errSave
Silencing TET1 expression alters the epigenomic landscape and amplifies transcriptomic responses to allergen in airway epithelial cells
errENVIRONMENTAL EPIGENETICS
IF3.2
err2025-03-20
err0
errOAAI
errBrown, Anthony P.; Parameswaran, Sreeja; Cai, Lucy; Elston, Sweeney; Pham, Chi; Barski, Artem; Weirauch, Matthew T.; Ji, Hong
errShare
errSave
Diaci v3.0: chromosome-level assembly, de novo transcriptome, and manual annotation of Diaphorina citri, insect vector of Huanglongbing
errGIGASCIENCE
IF3.9
err2024-12-20
err0
errOAAI
errShippy, Teresa D.; Hosmani, Prashant S.; Flores-Gonzalez, Mirella; Mann, Marina; Miller, Sherry; Weirauch, Matthew T.; Vosberg, Chad; Massimino, Crissy; Tank, Will; de Oliveira, Lucas; Chen, Chang; Hoyt, Stephanie; Adams, Rebekah; Adkins, Samuel; Bailey, Samuel T.; Chen, Xiaoting; Davis, Nina; Delaflor, Yesmarie; Espino, Michelle; Gervais, Kylie; Grace, Rebecca; Harper, Douglas; Hasan, Denisse L.; Hoang, Maria; Holcomb, Rachel; Jernigan, Margaryta R.; Kemp, Melissa; Kennedy, Bailey; Kercher, Kyle; Klaessan, Stefan; Kruse, Angela; Licata, Sophia; Lu, Andrea; Masse, Ron; Mathew, Anuja; Michels, Sarah; Michels, Elizabeth; Neiman, Alan; Norman, Seantel; Norus, Jordan; Ortiz, Yasmin; Panitz, Naftali; Paris, Thomson; Perentesis, Kitty M. R.; Perry, Michael; Reynolds, Max; Sena, Madison M.; Tamayo, Blessy; Thate, Amanda; Vandervoort, Sara; Ventura, Jessica; Weis, Nicholas; Wise, Tanner; Shatters, Robert G.; Heck, Michelle; Benoit, Joshua B.; Hunter, Wayne B.; Mueller, Lukas A.; Brown, Susan J.; D'Elia, Tom; Saha, Surya
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errSave
Lineage tracing of nuclei in skeletal myofibers uncovers distinct transcripts and interplay between myonuclear populations
errNATURE COMMUNICATIONS
IF15.7
err2024-10-30
err4
errOAAI
errSun, Chengyi; Swoboda, Casey O.; Morales, Fabian Montecino; Calvo, Cristofer; Petrany, Michael J.; Parameswaran, Sreeja; Vonhandorf, Andrew; Weirauch, Matthew T.; Lepper, Christoph; Millay, Douglas P.
errShare
errSave
High-throughput identification of functional regulatory SNPs in systemic lupus erythematosus
errNATURE COMMUNICATIONS
IF15.7
err2024-08-09
err0
errOAAI
errWang, Qiang; Kim, Taehyeung; Martinez-Bonet, Marta; Aguiar, Vitor R. C.; Sim, Sangwan; Cui, Jing; Sparks, Jeffrey A.; Chen, Xiaoting; Todd, Marc; Wauford, Brian; Marion, Miranda C.; Langefeld, Carl D.; Weirauch, Matthew T.; Gutierrez-Arcelus, Maria; Nigrovic, Peter A.
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errSave
Macrophage memories of early-life injury drive neonatal nociceptive priming
errCELL REPORTS
IF6.9
err2024-05-01
err0
errOAAI
errDourson, Adam J.; Fadaka, Adewale O.; Warshak, Anna M.; Paranjpe, Aditi; Weinhaus, Benjamin; Queme, Luis F.; Hofmann, Megan C.; Evans, Heather M.; Donmez, Omer A.; Forney, Carmy; Weirauch, Matthew T.; Kottyan, Leah C.; Lucas, Daniel; Deepe, George S.; Jankowski, Michael P.
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errSave
Filaggrin loss-of-function variants are associated with atopic dermatitis phenotypes in a diverse, early-life prospective cohort
errJCI INSIGHT
IF6.1
err2024-04-02
err3
errOAAI
errVirolainen, Samuel J.; Satish, Latha; Biagini, Jocelyn M.; Chaib, Hassan; Chang, Wan Chi; Dexheimer, Phillip J.; Dixon, Michael R.; Dunn, Katelyn; Fletcher, David; Forney, Carmy; Granitto, Marissa; Hestand, Matthew S.; Hurd, Makenna; Kauffman, Kenneth; Lawson, Lucinda; Martin, Lisa J.; Pena, Loren D. M.; Phelan, Kieran J.; Shook, Molly; Weirauch, Matthew T.; Hershey, Gurjit K. Khurana; Kottyan, Leah C.
errShare
errSave
Shared and distinct interactions of type 1 and type 2 Epstein-Barr Nuclear Antigen 2 with the human genome
errBMC GENOMICS
IF3.7
err2024-03-12
err5
errOAAI
errViel, Kenyatta C. M. F.; Parameswaran, Sreeja; Donmez, Omer A.; Forney, Carmy R.; Hass, Matthew R.; Yin, Cailing; Jones, Sydney H.; Prosser, Hayley K.; Diouf, Arame A.; Gittens, Olivia E.; Edsall, Lee E.; Chen, Xiaoting; Rowden, Hope; Dunn, Katelyn A.; Guo, Rui; Vonhandorf, Andrew; Leong, Merrin Man Long; Ernst, Kevin; Kaufman, Kenneth M.; Lawson, Lucinda P.; Gewurz, Ben; Zhao, Bo; Kottyan, Leah C.; Weirauch, Matthew T.
errShare
errSave

Research Directions

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Co-authors
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H-index: 170 · Papers: 578
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