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Bronwen Aken
University of California System
48H-index
72Paper Count
3.6WCitation Count
Published Papers 40
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2020-06-16
195
OAAI
Warr, Amanda; Affara, Nabeel; Aken, Bronwen; Beiki, Hamid; Bickhart, Derek M.; Billis, Konstantinos; Chow, William; Eory, Lel; Finlayson, Heather A.; Flicek, Paul; Giron, Carlos G.; Griffin, Darren K.; Hall, Richard; Hannum, Greg; Hourlier, Thibaut; Howe, Kerstin; Hume, David A.; Izuogu, Osagie; Kim, Kristi; Koren, Sergey; Liu, Haibou; Manchanda, Nancy; Martin, Fergal J.; Nonneman, Dan J.; O'Connor, Rebecca E.; Phillippy, Adam M.; Rohrer, Gary A.; Rosen, Benjamin D.; Rund, Laurie A.; Sargent, Carole A.; Schook, Lawrence B.; Schroeder, Steven G.; Schwartz, Ariel S.; Skinner, Ben M.; Talbot, Richard; Tseng, Elizabeth; Tuggle, Christopher K.; Watson, Mick; Smith, Timothy P. L.; Archibald, Alan L.
GIGASCIENCEIF3.9
2020-06-16195OAAIWarr, Amanda; Affara, Nabeel; Aken, Bronwen; Beiki, Hamid; Bickhart, Derek M.; Billis, Konstantinos; Chow, William; Eory, Lel; Finlayson, Heather A.; Flicek, Paul; Giron, Carlos G.; Griffin, Darren K.; Hall, Richard; Hannum, Greg; Hourlier, Thibaut; Howe, Kerstin; Hume, David A.; Izuogu, Osagie; Kim, Kristi; Koren, Sergey; Liu, Haibou; Manchanda, Nancy; Martin, Fergal J.; Nonneman, Dan J.; O'Connor, Rebecca E.; Phillippy, Adam M.; Rohrer, Gary A.; Rosen, Benjamin D.; Rund, Laurie A.; Sargent, Carole A.; Schook, Lawrence B.; Schroeder, Steven G.; Schwartz, Ariel S.; Skinner, Ben M.; Talbot, Richard; Tseng, Elizabeth; Tuggle, Christopher K.; Watson, Mick; Smith, Timothy P. L.; Archibald, Alan L..png){kind=icon}
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SaveThe comparative genomics and complex population history of Papio baboonsSCIENCE ADVANCES2019-01-04108OAAIRogers, Jeffrey; Raveendran, Muthuswamy; Harris, R. Alan; Mailund, Thomas; Leppala, Kalle; Athanasiadis, Georgios; Schierup, Mikkel Heide; Cheng, Jade; Munch, Kasper; Walker, Jerilyn A.; Konkel, Miriam K.; Jordan, Vallmer; Steely, Cody J.; Beckstrom, Thomas O.; Bergey, Christina; Burrell, Andrew; Schrempf, Dominik; Noll, Angela; Kothe, Maximillian; Kopp, Gisela H.; Liu, Yue; Murali, Shwetha; Billis, Konstantinos; Martin, Fergal J.; Muffato, Matthieu; Cox, Laura; Else, James; Disotell, Todd; Muzny, Donna M.; Phillips-Conroy, Jane; Aken, Bronwen; Eichler, Evan E.; Marques-Bonet, Tomas; Kosiol, Carolin; Batzer, Mark A.; Hahn, Matthew W.; Tung, Jenny; Zinner, Dietmar; Roos, Christian; Jolly, Clifford J.; Gibbs, Richard A.; Worley, Kim C.
SCIENCE ADVANCESIF12.5
2019-01-04108OAAIRogers, Jeffrey; Raveendran, Muthuswamy; Harris, R. Alan; Mailund, Thomas; Leppala, Kalle; Athanasiadis, Georgios; Schierup, Mikkel Heide; Cheng, Jade; Munch, Kasper; Walker, Jerilyn A.; Konkel, Miriam K.; Jordan, Vallmer; Steely, Cody J.; Beckstrom, Thomas O.; Bergey, Christina; Burrell, Andrew; Schrempf, Dominik; Noll, Angela; Kothe, Maximillian; Kopp, Gisela H.; Liu, Yue; Murali, Shwetha; Billis, Konstantinos; Martin, Fergal J.; Muffato, Matthieu; Cox, Laura; Else, James; Disotell, Todd; Muzny, Donna M.; Phillips-Conroy, Jane; Aken, Bronwen; Eichler, Evan E.; Marques-Bonet, Tomas; Kosiol, Carolin; Batzer, Mark A.; Hahn, Matthew W.; Tung, Jenny; Zinner, Dietmar; Roos, Christian; Jolly, Clifford J.; Gibbs, Richard A.; Worley, Kim C.ShareSaveEnsembl 2019NUCLEIC ACIDS RESEARCH2018-11-08699OAAICunningham, Fiona; Achuthan, Premanand; Akanni, Wasiu; Allen, James; Amode, M. Ridwan; Armean, Irina M.; Bennett, Ruth; Bhai, Jyothish; Billis, Konstantinos; Boddu, Sanjay; Cummins, Carla; Davidson, Claire; Dodiya, Kamalkumar Jayantilal; Gall, Astrid; Giron, Carlos Garcia; Gil, Laurent; Grego, Tiago; Haggerty, Leanne; Haskell, Erin; Hourlier, Thibaut; Izuogu, Osagie G.; Janacek, Sophie H.; Juettemann, Thomas; Kay, Mike; Laird, Matthew R.; Lavidas, Ilias; Liu, Zhicheng; Loveland, Jane E.; Marugan, Jose C.; Maurel, Thomas; McMahon, Aoife C.; Moore, Benjamin; Morales, Joannella; Mudge, Jonathan M.; Nuhn, Michael; Ogeh, Denye; Parker, Anne; Parton, Andrew; Patricio, Mateus; Salam, Ahamed Imran Abdul; Schmitt, Bianca M.; Schuilenburg, Helen; Sheppard, Dan; Sparrow, Helen; Stapleton, Eloise; Szuba, Marek; Taylor, Kieron; Threadgold, Glen; Thormann, Anja; Vullo, Alessandro; Walts, Brandon; Winterbottom, Andrea; Zadissa, Amonida; Chakiachvili, Marc; Frankish, Adam; Hunt, Sarah E.; Kostadima, Myrto; Langridge, Nick; Martin, Fergal J.; Muffato, Matthieu; Perry, Emily; Ruffier, Magali; Staines, Daniel M.; Trevanion, Stephen J.; Aken, Bronwen L.; Yates, Andrew D.; Zerbino, Daniel R.; Flicek, Paul
NUCLEIC ACIDS RESEARCHIF13.1
2018-11-08699OAAICunningham, Fiona; Achuthan, Premanand; Akanni, Wasiu; Allen, James; Amode, M. Ridwan; Armean, Irina M.; Bennett, Ruth; Bhai, Jyothish; Billis, Konstantinos; Boddu, Sanjay; Cummins, Carla; Davidson, Claire; Dodiya, Kamalkumar Jayantilal; Gall, Astrid; Giron, Carlos Garcia; Gil, Laurent; Grego, Tiago; Haggerty, Leanne; Haskell, Erin; Hourlier, Thibaut; Izuogu, Osagie G.; Janacek, Sophie H.; Juettemann, Thomas; Kay, Mike; Laird, Matthew R.; Lavidas, Ilias; Liu, Zhicheng; Loveland, Jane E.; Marugan, Jose C.; Maurel, Thomas; McMahon, Aoife C.; Moore, Benjamin; Morales, Joannella; Mudge, Jonathan M.; Nuhn, Michael; Ogeh, Denye; Parker, Anne; Parton, Andrew; Patricio, Mateus; Salam, Ahamed Imran Abdul; Schmitt, Bianca M.; Schuilenburg, Helen; Sheppard, Dan; Sparrow, Helen; Stapleton, Eloise; Szuba, Marek; Taylor, Kieron; Threadgold, Glen; Thormann, Anja; Vullo, Alessandro; Walts, Brandon; Winterbottom, Andrea; Zadissa, Amonida; Chakiachvili, Marc; Frankish, Adam; Hunt, Sarah E.; Kostadima, Myrto; Langridge, Nick; Martin, Fergal J.; Muffato, Matthieu; Perry, Emily; Ruffier, Magali; Staines, Daniel M.; Trevanion, Stephen J.; Aken, Bronwen L.; Yates, Andrew D.; Zerbino, Daniel R.; Flicek, PaulShareSaveGENCODE reference annotation for the human and mouse genomesNUCLEIC ACIDS RESEARCH2018-10-242.0KOAAIFrankish, Adam; Diekhans, Mark; Ferreira, Anne-Maud; Johnson, Rory; Jungreis, Irwin; Loveland, Jane; Mudge, Jonathan M.; Sisu, Cristina; Wright, James; Armstrong, Joel; Barnes, If; Berry, Andrew; Bignell, Alexandra; Sala, Silvia Carbonell; Chrast, Jacqueline; Cunningham, Fiona; Di Domenico, Tomas; Donaldson, Sarah; Fiddes, Ian T.; Giron, Carlos Garcia; Gonzalez, Jose Manuel; Grego, Tiago; Hardy, Matthew; Hourlier, Thibaut; Hunt, Toby; Izuogu, Osagie G.; Lagarde, Julien; Martin, Fergal J.; Martinez, Laura; Mohanan, Shamika; Muir, Paul; Navarro, Fabio C. P.; Parker, Anne; Pei, Baikang; Pozo, Fernando; Ruffier, Magali; Schmitt, Bianca M.; Stapleton, Eloise; Suner, Marie-Marthe; Sycheva, Irina; Uszczynska-Ratajczak, Barbara; Xu, Jinuri; Yates, Andrew; Zerbino, Daniel; Zhang, Yan; Aken, Bronwen; Choudhary, Jyoti S.; Gerstein, Mark; Guigo, Roderic; Hubbard, Tim J. P.; Kellis, Manolis; Paten, Benedict; Reymond, Alexandre; Tress, Michael L.; Flicek, Paul
NUCLEIC ACIDS RESEARCHIF13.1
2018-10-242.0KOAAIFrankish, Adam; Diekhans, Mark; Ferreira, Anne-Maud; Johnson, Rory; Jungreis, Irwin; Loveland, Jane; Mudge, Jonathan M.; Sisu, Cristina; Wright, James; Armstrong, Joel; Barnes, If; Berry, Andrew; Bignell, Alexandra; Sala, Silvia Carbonell; Chrast, Jacqueline; Cunningham, Fiona; Di Domenico, Tomas; Donaldson, Sarah; Fiddes, Ian T.; Giron, Carlos Garcia; Gonzalez, Jose Manuel; Grego, Tiago; Hardy, Matthew; Hourlier, Thibaut; Hunt, Toby; Izuogu, Osagie G.; Lagarde, Julien; Martin, Fergal J.; Martinez, Laura; Mohanan, Shamika; Muir, Paul; Navarro, Fabio C. P.; Parker, Anne; Pei, Baikang; Pozo, Fernando; Ruffier, Magali; Schmitt, Bianca M.; Stapleton, Eloise; Suner, Marie-Marthe; Sycheva, Irina; Uszczynska-Ratajczak, Barbara; Xu, Jinuri; Yates, Andrew; Zerbino, Daniel; Zhang, Yan; Aken, Bronwen; Choudhary, Jyoti S.; Gerstein, Mark; Guigo, Roderic; Hubbard, Tim J. P.; Kellis, Manolis; Paten, Benedict; Reymond, Alexandre; Tress, Michael L.; Flicek, PaulShareSaveRepeat associated mechanisms of genome evolution and function revealed by the &ITMus caroli&IT and &ITMus pahari&IT genomesGENOME RESEARCH2018-03-2184OAAIThybert, David; Roller, Masa; Navarro, Fabio C. P.; Fiddes, Ian; Streeter, Ian; Feig, Christine; Martin-Galvez, David; Kolmogorov, Mikhail; Janousek, Vaclav; Akanni, Wasiu; Aken, Bronwen; Aldridge, Sarah; Chakrapani, Varshith; Chow, William; Clarke, Laura; Cummins, Carla; Doran, Anthony; Dunn, Matthew; Goodstadt, Leo; Howe, Kerstin; Howell, Matthew; Josselin, Ambre-Aurore; Karn, Robert C.; Laukaitis, Christina M.; Jingtao, Lilue; Martin, Fergal; Muffato, Matthieu; Nachtweide, Stefanie; Quail, Michael A.; Sisu, Cristina; Stanke, Mario; Stefflova, Klara; Van Oosterhout, Cock; Veyrunes, Frederic; Ward, Ben; Yang, Fengtang; Yazdanifar, Golbahar; Zadissa, Amonida; Adams, David J.; Brazma, Alvis; Gerstein, Mark; Paten, Benedict; Pham, Son; Keane, Thomas M.; Odom, Duncan T.; Flicek, Paul
GENOME RESEARCHIF5.5
2018-03-2184OAAIThybert, David; Roller, Masa; Navarro, Fabio C. P.; Fiddes, Ian; Streeter, Ian; Feig, Christine; Martin-Galvez, David; Kolmogorov, Mikhail; Janousek, Vaclav; Akanni, Wasiu; Aken, Bronwen; Aldridge, Sarah; Chakrapani, Varshith; Chow, William; Clarke, Laura; Cummins, Carla; Doran, Anthony; Dunn, Matthew; Goodstadt, Leo; Howe, Kerstin; Howell, Matthew; Josselin, Ambre-Aurore; Karn, Robert C.; Laukaitis, Christina M.; Jingtao, Lilue; Martin, Fergal; Muffato, Matthieu; Nachtweide, Stefanie; Quail, Michael A.; Sisu, Cristina; Stanke, Mario; Stefflova, Klara; Van Oosterhout, Cock; Veyrunes, Frederic; Ward, Ben; Yang, Fengtang; Yazdanifar, Golbahar; Zadissa, Amonida; Adams, David J.; Brazma, Alvis; Gerstein, Mark; Paten, Benedict; Pham, Son; Keane, Thomas M.; Odom, Duncan T.; Flicek, PaulShareSaveA comprehensive genomic history of extinct and living elephants2018-02-26129OAAIPalkopoulou, Eleftheria; Lipson, Mark; Mallick, Swapan; Nielsen, Svend; Rohland, Nadin; Baleka, Sina; Karpinski, Emil; Ivancevici, Atma M.; Thu-Hien To; Kortschak, Daniel; Raison, Joy M.; Qu, Zhipeng; Chin, Tat-Jun; Alt, Kurt W.; Claesson, Stefan; Dalen, Love; MacPhee, Ross D. E.; Meller, Harald; Rocar, Alfred L.; Ryder, Oliver A.; Heiman, David; Young, Sarah; Breen, Matthew; Williams, Christina; Aken, Bronwen L.; Ruffier, Magali; Karlsson, Elinor; Johnson, Jeremy; Di Palma, Federica; Alfoldi, Jessica; Adelsoni, David L.; Mailund, Thomas; Munch, Kasper; Lindblad-Toh, Kerstin; Hofreiter, Michael; Poinar, Hendrik; Reich, David
2018-02-26129OAAIPalkopoulou, Eleftheria; Lipson, Mark; Mallick, Swapan; Nielsen, Svend; Rohland, Nadin; Baleka, Sina; Karpinski, Emil; Ivancevici, Atma M.; Thu-Hien To; Kortschak, Daniel; Raison, Joy M.; Qu, Zhipeng; Chin, Tat-Jun; Alt, Kurt W.; Claesson, Stefan; Dalen, Love; MacPhee, Ross D. E.; Meller, Harald; Rocar, Alfred L.; Ryder, Oliver A.; Heiman, David; Young, Sarah; Breen, Matthew; Williams, Christina; Aken, Bronwen L.; Ruffier, Magali; Karlsson, Elinor; Johnson, Jeremy; Di Palma, Federica; Alfoldi, Jessica; Adelsoni, David L.; Mailund, Thomas; Munch, Kasper; Lindblad-Toh, Kerstin; Hofreiter, Michael; Poinar, Hendrik; Reich, DavidShareSaveClonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly2018-02-12105OAAIWarren, Wesley C.; Garcia-Perez, Raquel; Xu, Sen; Lampert, Kathrin P.; Chalopin, Domitille; Stoeck, Matthias; Loewe, Laurence; Lu, Yuan; Kuderna, Lukas; Minx, Patrick; Montague, Michael J.; Tomlinson, Chad; Hillier, LaDeana W.; Murphy, Daniel N.; Wang, John; Wang, Zhongwei; Macias Garcia, Constantino; Thomas, Gregg C. W.; Volff, Jean-Nicolas; Farias, Fabiana; Aken, Bronwen; Walter, Ronald B.; Pruitt, Kim D.; Marques-Bonet, Tomas; Hahn, Matthew W.; Kneitz, Susanne; Lynch, Michael; Schartl, Manfred
2018-02-12105OAAIWarren, Wesley C.; Garcia-Perez, Raquel; Xu, Sen; Lampert, Kathrin P.; Chalopin, Domitille; Stoeck, Matthias; Loewe, Laurence; Lu, Yuan; Kuderna, Lukas; Minx, Patrick; Montague, Michael J.; Tomlinson, Chad; Hillier, LaDeana W.; Murphy, Daniel N.; Wang, John; Wang, Zhongwei; Macias Garcia, Constantino; Thomas, Gregg C. W.; Volff, Jean-Nicolas; Farias, Fabiana; Aken, Bronwen; Walter, Ronald B.; Pruitt, Kim D.; Marques-Bonet, Tomas; Hahn, Matthew W.; Kneitz, Susanne; Lynch, Michael; Schartl, ManfredShareSaveEnsembl 2018NUCLEIC ACIDS RESEARCH2017-11-162.2KOAAIZerbino, Daniel R.; Achuthan, Premanand; Akanni, Wasiu; Amode, M. Ridwan; Barrell, Daniel; Bhai, Jyothish; Billis, Konstantinos; Cummins, Carla; Gall, Astrid; Giron, Carlos Garcia; Gil, Laurent; Gordon, Leo; Haggerty, Leanne; Haskell, Erin; Hourlier, Thibaut; Izuogu, Osagie G.; Janacek, Sophie H.; Juettemann, Thomas; To, Jimmy Kiang; Laird, Matthew R.; Lavidas, Ilias; Liu, Zhicheng; Loveland, Jane E.; Maurel, Thomas; McLaren, William; Moore, Benjamin; Mudge, Jonathan; Murphy, Daniel N.; Newman, Victoria; Nuhn, Michael; Ogeh, Denye; Ong, Chuang Kee; Parker, Anne; Patricio, Mateus; Riat, Harpreet Singh; Schuilenburg, Helen; Sheppard, Dan; Sparrow, Helen; Taylor, Kieron; Thormann, Anja; Vullo, Alessandro; Walts, Brandon; Zadissa, Amonida; Frankish, Adam; Hunt, Sarah E.; Kostadima, Myrto; Langridge, Nicholas; Martin, Fergal J.; Muffato, Matthieu; Perry, Emily; Ruffier, Magali; Staines, Dan M.; Trevanion, Stephen J.; Aken, Bronwen L.; Cunningham, Fiona; Yates, Andrew; Flicek, Paul
NUCLEIC ACIDS RESEARCHIF13.1
2017-11-162.2KOAAIZerbino, Daniel R.; Achuthan, Premanand; Akanni, Wasiu; Amode, M. Ridwan; Barrell, Daniel; Bhai, Jyothish; Billis, Konstantinos; Cummins, Carla; Gall, Astrid; Giron, Carlos Garcia; Gil, Laurent; Gordon, Leo; Haggerty, Leanne; Haskell, Erin; Hourlier, Thibaut; Izuogu, Osagie G.; Janacek, Sophie H.; Juettemann, Thomas; To, Jimmy Kiang; Laird, Matthew R.; Lavidas, Ilias; Liu, Zhicheng; Loveland, Jane E.; Maurel, Thomas; McLaren, William; Moore, Benjamin; Mudge, Jonathan; Murphy, Daniel N.; Newman, Victoria; Nuhn, Michael; Ogeh, Denye; Ong, Chuang Kee; Parker, Anne; Patricio, Mateus; Riat, Harpreet Singh; Schuilenburg, Helen; Sheppard, Dan; Sparrow, Helen; Taylor, Kieron; Thormann, Anja; Vullo, Alessandro; Walts, Brandon; Zadissa, Amonida; Frankish, Adam; Hunt, Sarah E.; Kostadima, Myrto; Langridge, Nicholas; Martin, Fergal J.; Muffato, Matthieu; Perry, Emily; Ruffier, Magali; Staines, Dan M.; Trevanion, Stephen J.; Aken, Bronwen L.; Cunningham, Fiona; Yates, Andrew; Flicek, PaulShareSaveConsensus coding sequence (CCDS) database: a standardized set of human and mouse protein-coding regions supported by expert curationNUCLEIC ACIDS RESEARCH2017-11-0684OAAIPujar, Shashikant; O'Leary, Nuala A.; Farrell, Catherine M.; Loveland, Jane E.; Mudge, Jonathan M.; Wallin, Craig; Giron, Carlos G.; Diekhans, Mark; Barnes, If; Bennett, Ruth; Berry, Andrew E.; Cox, Eric; Davidson, Claire; Goldfarb, Tamara; Gonzalez, Jose M.; Hunt, Toby; Jackson, John; Joardar, Vinita; Kay, Mike P.; Kodali, Vamsi K.; Martin, Fergal J.; McAndrews, Monica; McGarvey, Kelly M.; Murphy, Michael; Rajput, Bhanu; Rangwala, Sanjida H.; Riddick, Lillian D.; Seal, Ruth L.; Suner, Marie-Marthe; Webb, David; Zhu, Sophia; Aken, Bronwen L.; Bruford, Elspeth A.; Bult, Carol J.; Frankish, Adam; Murphy, Terence; Pruitt, Kim D.
NUCLEIC ACIDS RESEARCHIF13.1
2017-11-0684OAAIPujar, Shashikant; O'Leary, Nuala A.; Farrell, Catherine M.; Loveland, Jane E.; Mudge, Jonathan M.; Wallin, Craig; Giron, Carlos G.; Diekhans, Mark; Barnes, If; Bennett, Ruth; Berry, Andrew E.; Cox, Eric; Davidson, Claire; Goldfarb, Tamara; Gonzalez, Jose M.; Hunt, Toby; Jackson, John; Joardar, Vinita; Kay, Mike P.; Kodali, Vamsi K.; Martin, Fergal J.; McAndrews, Monica; McGarvey, Kelly M.; Murphy, Michael; Rajput, Bhanu; Rangwala, Sanjida H.; Riddick, Lillian D.; Seal, Ruth L.; Suner, Marie-Marthe; Webb, David; Zhu, Sophia; Aken, Bronwen L.; Bruford, Elspeth A.; Bult, Carol J.; Frankish, Adam; Murphy, Terence; Pruitt, Kim D.ShareSaveGenetic variation and gene expression across multiple tissues and developmental stages in a nonhuman primateNATURE GENETICS2017-10-3030OAAIJasinska, Anna J.; Zelaya, Ivette; Service, Susan K.; Peterson, Christine B.; Cantor, Rita M.; Choi, Oi-Wa; DeYoung, Joseph; Eskin, Eleazar; Fairbanks, Lynn A.; Fears, Scott; Furterer, Allison E.; Huang, Yu S.; Ramensky, Vasily; Schmitt, Christopher A.; Svardal, Hannes; Jorgensen, Matthew J.; Kaplan, Jay R.; Villar, Diego; Aken, Bronwen L.; Flicek, Paul; Nag, Rishi; Wong, Emily S.; Blangero, John; Dyer, Thomas D.; Bogomolov, Marina; Benjamini, Yoav; Weinstock, George M.; Dewar, Ken; Sabatti, Chiara; Wilson, Richard K.; Jentsch, J. David; Warren, Wesley; Coppola, Giovanni; Woods, Roger P.; Freimer, Nelson B.
NATURE GENETICSIF31.8
2017-10-3030OAAIJasinska, Anna J.; Zelaya, Ivette; Service, Susan K.; Peterson, Christine B.; Cantor, Rita M.; Choi, Oi-Wa; DeYoung, Joseph; Eskin, Eleazar; Fairbanks, Lynn A.; Fears, Scott; Furterer, Allison E.; Huang, Yu S.; Ramensky, Vasily; Schmitt, Christopher A.; Svardal, Hannes; Jorgensen, Matthew J.; Kaplan, Jay R.; Villar, Diego; Aken, Bronwen L.; Flicek, Paul; Nag, Rishi; Wong, Emily S.; Blangero, John; Dyer, Thomas D.; Bogomolov, Marina; Benjamini, Yoav; Weinstock, George M.; Dewar, Ken; Sabatti, Chiara; Wilson, Richard K.; Jentsch, J. David; Warren, Wesley; Coppola, Giovanni; Woods, Roger P.; Freimer, Nelson B.ShareSaveEnsembl 2017NUCLEIC ACIDS RESEARCH2016-11-28457OAAIAken, Bronwen L.; Achuthan, Premanand; Akanni, Wasiu; Amode, M. Ridwan; Bernsdorff, Friederike; Bhai, Jyothish; Billis, Konstantinos; Carvalho-Silva, Denise; Cummins, Carla; Clapham, Peter; Gil, Laurent; Giron, Carlos Garcia; Gordon, Leo; Hourlier, Thibaut; Hunt, Sarah E.; Janacek, Sophie H.; Juettemann, Thomas; Keenan, Stephen; Laird, Matthew R.; Lavidas, Ilias; Maurel, Thomas; McLaren, William; Moore, Benjamin; Murphy, Daniel N.; Nag, Rishi; Newman, Victoria; Nuhn, Michael; Ong, Chuang Kee; Parker, Anne; Patricio, Mateus; Riat, Harpreet Singh; Sheppard, Daniel; Sparrow, Helen; Taylor, Kieron; Thormann, Anja; Vullo, Alessandro; Walts, Brandon; Wilder, Steven P.; Zadissa, Amonida; Kostadima, Myrto; Martin, Fergal J.; Muffato, Matthieu; Perry, Emily; Ruffier, Magali; Staines, Daniel M.; Trevanion, Stephen J.; Cunningham, Fiona; Yates, Andrew; Zerbino, Daniel R.; Flicek, Paul
NUCLEIC ACIDS RESEARCHIF13.1
2016-11-28457OAAIAken, Bronwen L.; Achuthan, Premanand; Akanni, Wasiu; Amode, M. Ridwan; Bernsdorff, Friederike; Bhai, Jyothish; Billis, Konstantinos; Carvalho-Silva, Denise; Cummins, Carla; Clapham, Peter; Gil, Laurent; Giron, Carlos Garcia; Gordon, Leo; Hourlier, Thibaut; Hunt, Sarah E.; Janacek, Sophie H.; Juettemann, Thomas; Keenan, Stephen; Laird, Matthew R.; Lavidas, Ilias; Maurel, Thomas; McLaren, William; Moore, Benjamin; Murphy, Daniel N.; Nag, Rishi; Newman, Victoria; Nuhn, Michael; Ong, Chuang Kee; Parker, Anne; Patricio, Mateus; Riat, Harpreet Singh; Sheppard, Daniel; Sparrow, Helen; Taylor, Kieron; Thormann, Anja; Vullo, Alessandro; Walts, Brandon; Wilder, Steven P.; Zadissa, Amonida; Kostadima, Myrto; Martin, Fergal J.; Muffato, Matthieu; Perry, Emily; Ruffier, Magali; Staines, Daniel M.; Trevanion, Stephen J.; Cunningham, Fiona; Yates, Andrew; Zerbino, Daniel R.; Flicek, PaulShareSaveThe Ensembl gene annotation system2016-06-23616OAAIAken, Bronwen L.; Ayling, Sarah; Barrell, Daniel; Clarke, Laura; Curwen, Valery; Fairley, Susan; Banet, Julio Fernandez; Billis, Konstantinos; Giron, Carlos Garcia; Hourlier, Thibaut; Howe, Kevin; Kahari, Andreas; Kokocinski, Felix; Martin, Fergal J.; Murphy, Daniel N.; Nag, Rishi; Ruffier, Magali; Schuster, Michael; Tang, Y. Amy; Vogel, Jan-Hinnerk; White, Simon; Zadissa, Amonida; Flicek, Paul; Searle, Stephen M. J.
2016-06-23616OAAIAken, Bronwen L.; Ayling, Sarah; Barrell, Daniel; Clarke, Laura; Curwen, Valery; Fairley, Susan; Banet, Julio Fernandez; Billis, Konstantinos; Giron, Carlos Garcia; Hourlier, Thibaut; Howe, Kevin; Kahari, Andreas; Kokocinski, Felix; Martin, Fergal J.; Murphy, Daniel N.; Nag, Rishi; Ruffier, Magali; Schuster, Michael; Tang, Y. Amy; Vogel, Jan-Hinnerk; White, Simon; Zadissa, Amonida; Flicek, Paul; Searle, Stephen M. J.ShareSaveThe spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons (vol 48, pg 427, 2016)NATURE GENETICS2016-05-275OAAIBraasch, Ingo; Gehrke, Andrew R.; Smith, Jeramiah J.; Kawasaki, Kazuhiko; Manousaki, Tereza; Pasquier, Jeremy; Amores, Angel; Desvignes, Thomas; Batzel, Peter; Catchen, Julian; Berlin, Aaron M.; Campbell, Michael S.; Barrell, Daniel; Martin, Kyle J.; Mulley, John F.; Ravi, Vydianathan; Lee, Alison P.; Nakamura, Tetsuya; Chalopin, Domitille; Fan, Shaohua; Wcisel, Dustin; Canestro, Cristian; Sydes, Jason; Beaudry, Felix E. G.; Sun, Yi; Hertel, Jana; Beam, Michael J.; Fasold, Mario; Ishiyama, Mikio; Johnson, Jeremy; Kehr, Steffi; Lara, Marcia; Letaw, John H.; Litman, Gary W.; Litman, Ronda T.; Mikami, Masato; Ota, Tatsuya; Saha, Nil Ratan; Williams, Louise; Stadler, Peter F.; Wang, Han; Taylor, John S.; Fontenot, Quenton; Ferrara, Allyse; Searle, Stephen M. J.; Aken, Bronwen; Yandell, Mark; Schneider, Igor; Yoder, Jeffrey A.; Volff, Jean-Nicolas; Meyer, Axel; Amemiya, Chris T.; Venkatesh, Byrappa; Holland, Peter W. H.; Guiguen, Yann; Bobe, Julien; Shubin, Neil H.; Di Palma, Federica; Alfoldi, Jessica; Lindblad-Toh, Kerstin; Postlethwait, John H.
NATURE GENETICSIF31.8
2016-05-275OAAIBraasch, Ingo; Gehrke, Andrew R.; Smith, Jeramiah J.; Kawasaki, Kazuhiko; Manousaki, Tereza; Pasquier, Jeremy; Amores, Angel; Desvignes, Thomas; Batzel, Peter; Catchen, Julian; Berlin, Aaron M.; Campbell, Michael S.; Barrell, Daniel; Martin, Kyle J.; Mulley, John F.; Ravi, Vydianathan; Lee, Alison P.; Nakamura, Tetsuya; Chalopin, Domitille; Fan, Shaohua; Wcisel, Dustin; Canestro, Cristian; Sydes, Jason; Beaudry, Felix E. G.; Sun, Yi; Hertel, Jana; Beam, Michael J.; Fasold, Mario; Ishiyama, Mikio; Johnson, Jeremy; Kehr, Steffi; Lara, Marcia; Letaw, John H.; Litman, Gary W.; Litman, Ronda T.; Mikami, Masato; Ota, Tatsuya; Saha, Nil Ratan; Williams, Louise; Stadler, Peter F.; Wang, Han; Taylor, John S.; Fontenot, Quenton; Ferrara, Allyse; Searle, Stephen M. J.; Aken, Bronwen; Yandell, Mark; Schneider, Igor; Yoder, Jeffrey A.; Volff, Jean-Nicolas; Meyer, Axel; Amemiya, Chris T.; Venkatesh, Byrappa; Holland, Peter W. H.; Guiguen, Yann; Bobe, Julien; Shubin, Neil H.; Di Palma, Federica; Alfoldi, Jessica; Lindblad-Toh, Kerstin; Postlethwait, John H.ShareSaveThe spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisonsNATURE GENETICS2016-03-07473OAAIBraasch, Ingo; Gehrke, Andrew R.; Smith, Jeramiah J.; Kawasaki, Kazuhiko; Manousaki, Tereza; Pasquier, Jeremy; Amores, Angel; Desvignes, Thomas; Batzel, Peter; Catchen, Julian; Berlin, Aaron M.; Campbell, Michael S.; Barrell, Daniel; Martin, Kyle J.; Mulley, John F.; Ravi, Vydianathan; Lee, Alison P.; Nakamura, Tetsuya; Chalopin, Domitille; Fan, Shaohua; Wcisel, Dustin; Canestro, Cristian; Sydes, Jason; Beaudry, Felix E. G.; Sun, Yi; Hertel, Jana; Beam, Michael J.; Fasold, Mario; Ishiyama, Mikio; Johnson, Jeremy; Kehr, Steffi; Lara, Marcia; Letaw, John H.; Litman, Gary W.; Litman, Ronda T.; Mikami, Masato; Ota, Tatsuya; Saha, Nil Ratan; Williams, Louise; Stadler, Peter F.; Wang, Han; Taylor, John S.; Fontenot, Quenton; Ferrara, Allyse; Searle, Stephen M. J.; Aken, Bronwen; Yandell, Mark; Schneider, Igor; Yoder, Jeffrey A.; Volff, Jean-Nicolas; Meyer, Axel; Amemiya, Chris T.; Venkatesh, Byrappa; Holland, Peter W. H.; Guiguen, Yann; Bobe, Julien; Shubin, Neil H.; Di Palma, Federica; Alfoeldi, Jessica; Lindblad-Toh, Kerstin; Postlethwait, John H.
NATURE GENETICSIF31.8
2016-03-07473OAAIBraasch, Ingo; Gehrke, Andrew R.; Smith, Jeramiah J.; Kawasaki, Kazuhiko; Manousaki, Tereza; Pasquier, Jeremy; Amores, Angel; Desvignes, Thomas; Batzel, Peter; Catchen, Julian; Berlin, Aaron M.; Campbell, Michael S.; Barrell, Daniel; Martin, Kyle J.; Mulley, John F.; Ravi, Vydianathan; Lee, Alison P.; Nakamura, Tetsuya; Chalopin, Domitille; Fan, Shaohua; Wcisel, Dustin; Canestro, Cristian; Sydes, Jason; Beaudry, Felix E. G.; Sun, Yi; Hertel, Jana; Beam, Michael J.; Fasold, Mario; Ishiyama, Mikio; Johnson, Jeremy; Kehr, Steffi; Lara, Marcia; Letaw, John H.; Litman, Gary W.; Litman, Ronda T.; Mikami, Masato; Ota, Tatsuya; Saha, Nil Ratan; Williams, Louise; Stadler, Peter F.; Wang, Han; Taylor, John S.; Fontenot, Quenton; Ferrara, Allyse; Searle, Stephen M. J.; Aken, Bronwen; Yandell, Mark; Schneider, Igor; Yoder, Jeffrey A.; Volff, Jean-Nicolas; Meyer, Axel; Amemiya, Chris T.; Venkatesh, Byrappa; Holland, Peter W. H.; Guiguen, Yann; Bobe, Julien; Shubin, Neil H.; Di Palma, Federica; Alfoeldi, Jessica; Lindblad-Toh, Kerstin; Postlethwait, John H.ShareSaveEnsembl 2016NUCLEIC ACIDS RESEARCH2015-12-191.2KOAAIYates, Andrew; Akanni, Wasiu; Amode, M. Ridwan; Barrell, Daniel; Billis, Konstantinos; Carvalho-Silva, Denise; Cummins, Carla; Clapham, Peter; Fitzgerald, Stephen; Gil, Laurent; Giron, Carlos Garcia; Gordon, Leo; Hourlier, Thibaut; Hunt, Sarah E.; Janacek, Sophie H.; Johnson, Nathan; Juettemann, Thomas; Keenan, Stephen; Lavidas, Ilias; Martin, Fergal J.; Maurel, Thomas; McLaren, William; Murphy, Daniel N.; Nag, Rishi; Nuhn, Michael; Parker, Anne; Patricio, Mateus; Pignatelli, Miguel; Rahtz, Matthew; Riat, Harpreet Singh; Sheppard, Daniel; Taylor, Kieron; Thormann, Anja; Vullo, Alessandro; Wilder, Steven P.; Zadissa, Amonida; Birney, Ewan; Harrow, Jennifer; Muffato, Matthieu; Perry, Emily; Ruffier, Magali; Spudich, Giulietta; Trevanion, Stephen J.; Cunningham, Fiona; Aken, Bronwen L.; Zerbino, Daniel R.; Flicek, Paul
NUCLEIC ACIDS RESEARCHIF13.1
2015-12-191.2KOAAIYates, Andrew; Akanni, Wasiu; Amode, M. Ridwan; Barrell, Daniel; Billis, Konstantinos; Carvalho-Silva, Denise; Cummins, Carla; Clapham, Peter; Fitzgerald, Stephen; Gil, Laurent; Giron, Carlos Garcia; Gordon, Leo; Hourlier, Thibaut; Hunt, Sarah E.; Janacek, Sophie H.; Johnson, Nathan; Juettemann, Thomas; Keenan, Stephen; Lavidas, Ilias; Martin, Fergal J.; Maurel, Thomas; McLaren, William; Murphy, Daniel N.; Nag, Rishi; Nuhn, Michael; Parker, Anne; Patricio, Mateus; Pignatelli, Miguel; Rahtz, Matthew; Riat, Harpreet Singh; Sheppard, Daniel; Taylor, Kieron; Thormann, Anja; Vullo, Alessandro; Wilder, Steven P.; Zadissa, Amonida; Birney, Ewan; Harrow, Jennifer; Muffato, Matthieu; Perry, Emily; Ruffier, Magali; Spudich, Giulietta; Trevanion, Stephen J.; Cunningham, Fiona; Aken, Bronwen L.; Zerbino, Daniel R.; Flicek, PaulShareSaveThe genome of the vervet (Chlorocebus aethiops sabaeus)GENOME RESEARCH2015-09-1679OAAIWarren, Wesley C.; Jasinska, Anna J.; Garcia-Perez, Raquel; Svarda, Hannes; Tomlinson, Chad; Rocchi, Mariano; Archidiacono, Nicoletta; Capozzi, Oronzo; Minx, Patrick; Montague, Michael J.; Kyung, Kim; Hillier, LaDeana W.; Kremitzki, Milinn; Graves, Tina; Chiang, Colby; Hughes, Jennifer; Tran, Nam; Huang, Yu; Ramensky, Vasily; Choi, Oi-wa; Jung, Yoon J.; Schmitt, Christopher A.; Juretic, Nikoleta; Wasserscheid, Jessica; Turner, Trudy R.; Wiseman, Roger W.; Tuscher, Jennifer J.; Kar, Julie A.; Schmitz, Joern E.; Zahn, Roland; O'Connor, David H.; Redmond, Eugene; Nisbett, Alex; Jacquelin, Beatrice; Mueller-Trutwin, Michaela C.; Brenchley, Jason M.; Dione, Michel; Antonio, Martin; Schroth, Gary P.; Kaplan, Jay R.; Jorgensen, Matthew J.; Thomas, Gregg W. C.; Hahn, Matthew W.; Raney, Brian J.; Aken, Bronwen; Nag, Rishi; Schmitz, Juergen; Churakov, Gennady; Noll, Angela; Stanyon, Roscoe; Webb, David; Thibaud-Nissen, Francoise; Nordborg, Magnus; Marques-Bonet, Tomas; Dewar, Ken; Weinstock, George M.; Wilson, Richard K.; Freimer, Nelson B.
GENOME RESEARCHIF5.5
2015-09-1679OAAIWarren, Wesley C.; Jasinska, Anna J.; Garcia-Perez, Raquel; Svarda, Hannes; Tomlinson, Chad; Rocchi, Mariano; Archidiacono, Nicoletta; Capozzi, Oronzo; Minx, Patrick; Montague, Michael J.; Kyung, Kim; Hillier, LaDeana W.; Kremitzki, Milinn; Graves, Tina; Chiang, Colby; Hughes, Jennifer; Tran, Nam; Huang, Yu; Ramensky, Vasily; Choi, Oi-wa; Jung, Yoon J.; Schmitt, Christopher A.; Juretic, Nikoleta; Wasserscheid, Jessica; Turner, Trudy R.; Wiseman, Roger W.; Tuscher, Jennifer J.; Kar, Julie A.; Schmitz, Joern E.; Zahn, Roland; O'Connor, David H.; Redmond, Eugene; Nisbett, Alex; Jacquelin, Beatrice; Mueller-Trutwin, Michaela C.; Brenchley, Jason M.; Dione, Michel; Antonio, Martin; Schroth, Gary P.; Kaplan, Jay R.; Jorgensen, Matthew J.; Thomas, Gregg W. C.; Hahn, Matthew W.; Raney, Brian J.; Aken, Bronwen; Nag, Rishi; Schmitz, Juergen; Churakov, Gennady; Noll, Angela; Stanyon, Roscoe; Webb, David; Thibaud-Nissen, Francoise; Nordborg, Magnus; Marques-Bonet, Tomas; Dewar, Ken; Weinstock, George M.; Wilson, Richard K.; Freimer, Nelson B.ShareSaveAvianbase: a community resource for bird genomicsGENOME BIOLOGY2015-01-2928OAAIEoery, Lel; Gilbert, M. Thomas P.; Li, Cai; Li, Bo; Archibald, Alan; Aken, Bronwen L.; Zhang, Guojie; Jarvis, Erich; Flicek, Paul; Burt, David W.
GENOME BIOLOGYIF9.4
2015-01-2928OAAIEoery, Lel; Gilbert, M. Thomas P.; Li, Cai; Li, Bo; Archibald, Alan; Aken, Bronwen L.; Zhang, Guojie; Jarvis, Erich; Flicek, Paul; Burt, David W.ShareSaveExtending reference assembly modelsGENOME BIOLOGY2015-01-24114OAAIChurch, Deanna M.; Schneider, Valerie A.; Steinberg, Karyn Meltz; Schatz, Michael C.; Quinlan, Aaron R.; Chin, Chen-Shan; Kitts, Paul A.; Aken, Bronwen; Marth, Gabor T.; Hoffman, Michael M.; Herrero, Javier; Mendoza, M. Lisandra Zepeda; Durbin, Richard; Flicek, Paul
GENOME BIOLOGYIF9.4
2015-01-24114OAAIChurch, Deanna M.; Schneider, Valerie A.; Steinberg, Karyn Meltz; Schatz, Michael C.; Quinlan, Aaron R.; Chin, Chen-Shan; Kitts, Paul A.; Aken, Bronwen; Marth, Gabor T.; Hoffman, Michael M.; Herrero, Javier; Mendoza, M. Lisandra Zepeda; Durbin, Richard; Flicek, PaulShareSaveThe draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory diseaseNATURE BIOTECHNOLOGY2014-11-17108OAAIPeng, Xinxia; Alfoeldi, Jessica; Gori, Kevin; Eisfeld, Amie J.; Tyler, Scott R.; Tisoncik-Go, Jennifer; Brawand, David; Law, G. Lynn; Skunca, Nives; Hatta, Masato; Gasper, David J.; Kelly, Sara M.; Chang, Jean; Thomas, Matthew J.; Johnson, Jeremy; Berlin, Aaron M.; Lara, Marcia; Russell, Pamela; Swofford, Ross; Turner-Maier, Jason; Young, Sarah; Hourlier, Thibaut; Aken, Bronwen; Searle, Steve; Sun, Xingshen; Yi, Yaling; Suresh, M.; Tumpey, Terrence M.; Siepel, Adam; Wisely, Samantha M.; Dessimoz, Christophe; Kawaoka, Yoshihiro; Birren, Bruce W.; Lindblad-Toh, Kerstin; Di Palma, Federica; Engelhardt, John F.; Palermo, Robert E.; Katze, Michael G.
NATURE BIOTECHNOLOGYIF41.7
2014-11-17108OAAIPeng, Xinxia; Alfoeldi, Jessica; Gori, Kevin; Eisfeld, Amie J.; Tyler, Scott R.; Tisoncik-Go, Jennifer; Brawand, David; Law, G. Lynn; Skunca, Nives; Hatta, Masato; Gasper, David J.; Kelly, Sara M.; Chang, Jean; Thomas, Matthew J.; Johnson, Jeremy; Berlin, Aaron M.; Lara, Marcia; Russell, Pamela; Swofford, Ross; Turner-Maier, Jason; Young, Sarah; Hourlier, Thibaut; Aken, Bronwen; Searle, Steve; Sun, Xingshen; Yi, Yaling; Suresh, M.; Tumpey, Terrence M.; Siepel, Adam; Wisely, Samantha M.; Dessimoz, Christophe; Kawaoka, Yoshihiro; Birren, Bruce W.; Lindblad-Toh, Kerstin; Di Palma, Federica; Engelhardt, John F.; Palermo, Robert E.; Katze, Michael G.ShareSaveComparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication2014-11-10249OAAIMontague, Michael J.; Li, Gang; Gandolfi, Barbara; Khan, Razib; Aken, Bronwen L.; Searle, Steven M. J.; Minx, Patrick; Hillier, LaDeana W.; Koboldt, Daniel C.; Davis, Brian W.; Driscoll, Carlos A.; Barr, Christina S.; Blackistone, Kevin; Quilez, Javier; Lorente-Galdos, Belen; Marques-Bonet, Tomas; Alkan, Can; Thomas, Gregg W. C.; Hahn, Matthew W.; Menotti-Raymond, Marilyn; O'Brien, Stephen J.; Wilson, Richard K.; Lyons, Leslie A.; Murphy, William J.; Warren, Wesley C.
2014-11-10249OAAIMontague, Michael J.; Li, Gang; Gandolfi, Barbara; Khan, Razib; Aken, Bronwen L.; Searle, Steven M. J.; Minx, Patrick; Hillier, LaDeana W.; Koboldt, Daniel C.; Davis, Brian W.; Driscoll, Carlos A.; Barr, Christina S.; Blackistone, Kevin; Quilez, Javier; Lorente-Galdos, Belen; Marques-Bonet, Tomas; Alkan, Can; Thomas, Gregg W. C.; Hahn, Matthew W.; Menotti-Raymond, Marilyn; O'Brien, Stephen J.; Wilson, Richard K.; Lyons, Leslie A.; Murphy, William J.; Warren, Wesley C.ShareSaveResearch Directions
No research directions