Judith F. Kribelbauer - Publications, H-index & Citations

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Judith F. Kribelbauer

ecole polytechnique federale de lausanne

13H-index

37Paper Count

1.1KCitation Count

Published Papers 18

Publication Date

An expanded codebook of human transcription factor DNA-binding specificity

Nature

IF48.5

2026-08-05

OAAI

Arttu Jolma; Kaitlin U. Laverty; Ali Fathi; Ally W. H. Yang; Isaac Yellan; Ilya E. Vorontsov; Antoni J. Gralak; Judith F. Kribelbauer-Swietek; Sachi Inukai; Rozita Razavi; Mihai Albu; Alexander Brechalov; Zain M. Patel; Vladimir Nozdrin; Georgy Meshcheryakov; Andrey Buyan; Ivan Kozin; Sergey Abramov; Alexandr Boytsov; Quaid Morris; Matthew T. Weirauch; Oriol Fornes; Vsevolod J. Makeev; Jan Grau; Ivo Grosse; Philipp Bucher; Bart Deplancke; Ivan V. Kulakovskiy; Timothy R. Hughes

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Identification of methylation-sensitive human transcription factors using meSMiLE-seq

Nature Communications

IF15.7

2026-08-05

OAAI

Antoni J. Gralak; Katerina Faltejskova; Ally W. H. Yang; Clemence Steiner; Julie Russeil; Nadia Grenningloh; Sachi Inukai; Mustafa Demir; Riccardo Dainese; Cooper Owen; Eugenia V. Pankevich; Timothy R. Hughes; Ivan V. Kulakovskiy; Judith F. Kribelbauer-Swietek; Guido van Mierlo; Bart Deplancke

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Quantitative modulation of a spatial enhancer through the biophysical properties of a transcription factor binding site

Science Advances

IF12.5

2026-01-07

PREAI

Conrad Fallon; Liucong Ling; Brendon H. Cooper; Stefano Ceolin; Tsu-Pei Chiu; Raktim Mitra; Bettina Mühling; Vani Srinivasan; Ayse Damla Durmaz; Daniel Veselinovic; Mahek Kothari; Athanasios Panagiotis Fylaktakis; William J. Glassford; Judith F. Kribelbauer-Swietek; Dimitrios K. Papadopoulos; Richard S. Mann; Remo Rohs; Nicolas Gompel

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Designing synthetic regulatory elements using the generative AI framework DNA-Diffusion

Nature Genetics

IF29

2025-12-23

PREAI

Lucas Ferreira DaSilva; Simon Senan; Judith F. Kribelbauer-Swietek; Zain Munir Patel; Lithin Karmel Louis; Aniketh Janardhan Reddy; Sameer Gabbita; Jonathan D. Rosen; Zach Nussbaum; César Miguel Valdez Córdova; Aaron Wenteler; Noah Weber; Tin M. Tunjic; Martino Mansoldo; Talha Ahmad Khan; Gue-Ho Hwang; Vincent Gardeux; David T. Humphreys; Cameron Smith; Matei Bejan; Peter Bromley; Will Connell; Bart Deplancke; Michael I. Love; Emily S. Wong; Wouter Meuleman; Luca Pinello

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Cross-platform motif discovery and benchmarking to explore binding specificities of poorly studied human transcription factors

Communications Biology

IF5.1

2025-11-07

OAAI

Ilya E. Vorontsov; Ivan Kozin; Sergey Abramov; Alexandr Boytsov; Arttu Jolma; Mihai Albu; Giovanna Ambrosini; Katerina Faltejskova; Antoni J. Gralak; Nikita Gryzunov; Sachi Inukai; Semyon Kolmykov; Pavel Kravchenko; Judith F. Kribelbauer-Swietek; Kaitlin U. Laverty; Vladimir Nozdrin; Zain M. Patel; Dmitry Penzar; Marie-Luise Plescher; Sara E. Pour; Rozita Razavi; Ally W. H. Yang; Ivan Yevshin; Arsenii Zinkevich; Matthew T. Weirauch; Philipp Bucher; Bart Deplancke; Oriol Fornes; Jan Grau; Ivo Grosse; Fedor A. Kolpakov; Vsevolod J. Makeev; Timothy R. Hughes; Ivan V. Kulakovskiy

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Multiscale regulation of nutrient stress responses in Escherichia coli from chromatin structure to small regulatory RNAs

NUCLEIC ACIDS RESEARCH

IF13.1

2025-07-22

OAAI

Ekdahl, Alyssa M.; Julien, Tatiana; Suraj, Sahana; Kribelbauer-Swietek, Judith F.; Tavazoie, Saeed; Freddolino, Lydia; Contreras, Lydia M.

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Context transcription factors establish cooperative environments and mediate enhancer communication

NATURE GENETICS

IF31.8

2024-10-03

OAAI

Kribelbauer-Swietek, Judith F.; Pushkarev, Olga; Gardeux, Vincent; Faltejskova, Katerina; Russeil, Julie; van Mierlo, Guido; Deplancke, Bart

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Non-coding variants impact cis-regulatory coordination in a cell type-specific manner

GENOME BIOLOGY

IF9.4

2024-07-18

OAAI

Pushkarev, Olga; van Mierlo, Guido; Kribelbauer, Judith Franziska; Saelens, Wouter; Gardeux, Vincent; Deplancke, Bart

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Chromatin modules and their implication in genomic organization and gene regulation

TRENDS IN GENETICS

IF16.3

2023-02-01

OAAI

van Mierlo, Guido; Pushkarev, Olga; Kribelbauer, Judith F.; Deplancke, Bart

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Prediction of protein-ligand binding affinity from sequencing data with interpretable machine learning

NATURE BIOTECHNOLOGY

IF41.7

2022-05-23

OAAI

Rube, H. Tomas; Rastogi, Chaitanya; Feng, Siqian; Kribelbauer, Judith F.; Li, Allyson; Becerra, Basheer; Melo, Lucas A. N.; Do, Bach Viet; Li, Xiaoting; Adam, Hammaad H.; Shah, Neel H.; Mann, Richard S.; Bussemaker, Harmen J.

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A leukemia-protective germline variant mediates chromatin module formation via transcription factor nucleation

NATURE COMMUNICATIONS

IF15.7

2022-04-19

OAAI

Llimos, Gerard; Gardeux, Vincent; Koch, Ute; Kribelbauer, Judith F.; Hafner, Antonina; Alpern, Daniel; Pezoldt, Joern; Litovchenko, Maria; Russeil, Julie; Dainese, Riccardo; Moia, Riccardo; Mahmoud, Abdurraouf Mokhtar; Rossi, Davide; Gaidano, Gianluca; Plass, Christoph; Lutsik, Pavlo; Gerhauser, Clarissa; Waszak, Sebastian M.; Boettiger, Alistair; Radtke, Freddy; Deplancke, Bart

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Context-Dependent Gene Regulation by Homeodomain Transcription Factor Complexes Revealed by Shape-Readout Deficient Proteins

MOLECULAR CELL

IF16.6

2020-04-01

OAAI

Kribelbauer, Judith F.; Loker, Ryan E.; Feng, Siqian; Rastogi, Chaitanya; Abe, Namiko; Rube, H. Tomas; Bussemaker, Harmen J.; Mann, Richard S.

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Low-Affinity Binding Sites and the Transcription Factor Specificity Paradox in Eukaryotes

ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY

IF0

2019-10-06

145

OAAI

Kribelbauer, Judith F.; Rastogi, Chaitanya; Bussemaker, Harmen J.; Mann, Richard S.

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Accurate and sensitive quantification of protein-DNA binding affinity

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2018-04-02

OAAI

Rastogi, Chaitanya; Rube, H. Tomas; Kribelbauer, Judith F.; Crocker, Justin; Loker, Ryan E.; Martini, Gabriella D.; Laptenko, Oleg; Freed-Pastor, William A.; Prives, Carol; Stern, David L.; Mann, Richard S.; Bussemaker, Harmen J.

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A unified approach for quantifying and interpreting DNA shape readout by transcription factors

MOLECULAR SYSTEMS BIOLOGY

IF7.7

2018-02-22

OAAI

Rube, H. Tomas; Rastogi, Chaitanya; Kribelbauer, Judith F.; Bussemaker, Harmen J.

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Systematic prediction of DNA shape changes due to CpG methylation explains epigenetic effects on protein-DNA binding

EPIGENETICS & CHROMATIN

IF3.5

2018-02-06

OAAI

Rao, Satyanarayan; Chiu, Tsu-Pei; Kribelbauer, Judith F.; Mann, Richard S.; Bussemaker, Harmen J.; Rohs, Remo

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SelexGLM differentiates androgen and glucocorticoid receptor DNA-binding preference over an extended binding site

GENOME RESEARCH

IF5.5

2017-12-01

OAAI

Zhang, Liyang; Martini, Gabriella D.; Rube, H. Tomas; Kribelbauer, Judith F.; Rastogi, Chaitanya; FitzPatrick, Vincent D.; Houtman, Jon C.; Bussemaker, Harmen J.; Pufall, Miles A.

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Quantitative Analysis of the DNA Methylation Sensitivity of Transcription Factor Complexes

CELL REPORTS

IF6.9

2017-06-01

OAAI

Kribelbauer, Judith F.; Laptenko, Oleg; Chen, Siying; Martini, Gabriella D.; Freed-Pastor, William A.; Prives, Carol; Mann, Richard S.; Bussemaker, Harmen J.

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Research Directions