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Richard E. Green

University of California, Santa Cruz

74H-index
239Paper Count
4.5WCitation Count
Published Papers 77
Publication Date
Paleogenomic insight into the collapse; recovery; and management of American bison
errScience
IF45.8
err2026-08-06
err0
PREAI
errJonas Oppenheimer; Joshua D. Kapp; Molly Cassatt-Johnstone; Samuel Sacco; William E. Seligmann; Holland C. Conwell; Sarah Ford; Cassandra Gunn; Lael D. Barlow; Amy Phillips; Kenneth P. Cannon; Lawrence C. Todd; Spencer R. Pelton; Glen MacKay; Kyle Forsythe; Mark A. Edwards; Mark C. Ball; David R. W. Bruinsma; Jessica Z. Metcalfe; John W. Ives; Robert J. Losey; Tatiana Nomokonova; Tomasin Playford; Chris Widga; Craig M. Lee; Karsten Heuer; Wes Olson; Paul Stothard; John Southon; Donalee M. Deck; Christopher N. Jass; Richard E. Green; Lee C. Jones; Gregg P. Adams; Todd K. Shury; Gregory A. Wilson; Beth Shapiro
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Naturally-occurring DNA fragment termini correlate with methylation at CpG sites in hair and blood plasma cell-free DNA
err2026-02-20
err0
errOAAI
errSamuel Sacco; Joshua D. Kapp; Remy Nguyen; Isha S. Rao; Richard E. Green
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Author Correction: Striking convergent selection history of wheat and barley and its potential for breeding
err2025-11-24
err0
errOAAI
errMamadou Dia Sow; Cristian Forestan; Caroline Pont; Peter Civan; Raffaella Battaglia; Michael Seidel; Clea Siguret; Pasquale Luca Curci; Alessandro Tondelli; Daniela Bustos Korts; Elisabetta Mazzucotelli; Thibault Leroy; Cécile Huneau; Manon Delahaye; Danara Ormanbekova; Matteo Bozzoli; Perle Guarino-Vignon; Caroline Schaal; Manon Cabanis; Marie Lelievre; Jean Cayrol; Davide Guerra; Domenica Nigro; Agata Gadaleta; Jennifer Ens; Krystalee Wiebe; Beth Shapiro; Richard E. Green; Fred van Eeuwijk; Micha Bayer; Joanne Russell; Ian Dawson; Robbie Waugh; Benjamin Kilian; Ludovic Orlando; Gabriella Sonnante; Curtis J. Pozniak; Roberto Tuberosa; Georg Haberer; Marco Maccaferri; Luigi Cattivelli; Jerome Salse
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Striking convergent selection history of wheat and barley and its potential for breeding
err2025-11-17
err0
errOAAI
errMamadou Dia Sow; Cristian Forestan; Caroline Pont; Peter Civan; Raffaella Battaglia; Michael Seidel; Clea Siguret; Pasquale Luca Curci; Alessandro Tondelli; Daniela Bustos Korts; Elisabetta Mazzucotelli; Thibault Leroy; Cécile Huneau; Manon Delayhe; Danara Ormanbekova; Matteo Bozzoli; Perle Guarino-Vignon; Caroline Schaal; Manon Cabanis; Marie Lelievre; Jean Cayrol; Davide Guerra; Domenica Nigro; Agata Gadaleta; Jennifer Ens; Krystalee Wiebe; Beth Shapiro; Richard E. Green; Fred van Eeuwijk; Micha Bayer; Joanne Russell; Ian Dawson; Robbie Waugh; Benjamin Kilian; Ludovic Orlando; Gabriella Sonnante; Curtis J. Pozniak; Roberto Tuberosa; Georg Haberer; Marco Maccaferri; Luigi Cattivelli; Jerome Salse
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Hi-reComb: constructing recombination maps from bulk gamete Hi-C sequencing
err2025-08-01
err0
errOAAI
errMalinsky, Milan; Talbi, Marion; Zhou, Chenxi; Maurer, Nicholas; Sacco, Samuel; Shapiro, Beth; Peichel, Catherine L.; Seehausen, Ole; Salzburger, Walter; Weber, Jesse N.; Bolnick, Daniel, I; Green, Richard E.; Durbin, Richard
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A genome assembly for Lahontan Cutthroat Trout, Oncorhynchus clarkii henshawi
err2025-08-01
err0
errOAAI
errPayne, Cheyenne Y.; Escalona, Merly; Kieran Blair, Shannon R.; Finger, Amanda J.; Green, Richard E.; Pearse, Devon; Rodzen, Jeff; Garza, John Carlos
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Inert splint-driven oligonucleotide assembly
err2024-12-13
err0
errOAAI
errMishin, Andrew A.; Groth, Tobin; Green, Richard E.; Troll, Christopher J.
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A genome assembly of the American black bear, Ursus americanus, from California
err2024-07-15
err1
errOAAI
errSupple, Megan A.; Escalona, Merly; Adkins, Jillian; Buchalski, Michael R.; Alexandre, Nicolas; Sahasrabudhe, Ruta M.; Nguyen, Oanh; Sacco, Samuel; Fairbairn, Colin; Beraut, Eric; Seligmann, William; Green, Richard E.; Meredith, Erin; Shapiro, Beth
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A hybridization target enrichment approach for pathogen genomics
errMBIO
IF4.7
err2023-10-31
err6
errOAAI
errSundararaman, Balaji; Sylvester, Matthew D.; Kozyreva, Varvara K.; Berrada, Zenda L.; Corbett-Detig, Russell B.; Green, Richard E.
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A computational approach for positive genetic identification and relatedness detection from low-coverage shotgun sequencing data
err2023-06-29
err6
errOAAI
errNguyen, Remy; Kapp, Joshua D.; Sacco, Samuel; Myers, Steven P.; Green, Richard E.
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A method to generate capture baits for targeted sequencing
err2023-06-01
err2
errOAAI
errSundararaman, Balaji; Vershinina, Alisa O.; Hershauer, Samantha; Kapp, Joshua D.; Dunn, Shelby; Shapiro, Beth; Green, Richard E.
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Pangenome graph construction from genome alignments with Minigraph-Cactus
err2023-05-10
err49
errOAAI
errHickey, Glenn; Monlong, Jean; Ebler, Jana; Novak, Adam M.; Eizenga, Jordan M.; Gao, Yan; Marschall, Tobias; Li, Heng; Paten, Benedict; Abel, Haley J.; Antonacci-Fulton, Lucinda L.; Asri, Mobin; Baid, Gunjan; Baker, Carl A.; Belyaeva, Anastasiya; Billis, Konstantinos; Bourque, Guillaume; Buonaiuto, Silvia; Carroll, Andrew; Chaisson, Mark J. P.; Chang, Pi-Chuan; Chang, Xian H.; Cheng, Haoyu; Chu, Justin; Cody, Sarah; Colonna, Vincenza; Cook, Daniel E.; Cook-Deegan, Robert M.; Cornejo, Omar E.; Diekhans, Mark; Doerr, Daniel; Ebert, Peter; Ebler, Jana; Eichler, Evan E.; Eizenga, Jordan M.; Fairley, Susan; Fedrigo, Olivier; Felsenfeld, Adam L.; Feng, Xiaowen; Fischer, Christian; Flicek, Paul; Formenti, Giulio; Frankish, Adam; Fulton, Robert S.; Gao, Yan; Garg, Shilpa; Garrison, Erik; Garrison, Nanibaa' A.; Giron, Carlos Garcia; Green, Richard E.; Groza, Cristian; Guarracino, Andrea; Haggerty, Leanne; Hall, Ira M.; Harvey, William T.; Haukness, Marina; Haussler, David; Heumos, Simon; Hickey, Glenn; Hoekzema, Kendra; Hourlier, Thibaut; Howe, Kerstin; Jain, Miten; Jarvis, Erich D.; Ji, Hanlee P.; Kenny, Eimear E.; Koenig, Barbara A.; Kolesnikov, Alexey; Korbel, Jan O.; Kordosky, Jennifer; Koren, Sergey; Lee, HoJoon; Lewis, Alexandra P.; Liao, Wen-Wei; Lu, Shuangjia; Lu, Tsung-Yu; Lucas, Julian K.; Hugo, Magalhaes; Santiago, Marco-Sola; Marijon, Pierre; Markello, Charles; Marschall, Tobias; Martin, Fergal J.; McCartney, Ann; McDaniel, Jennifer; Miga, Karen H.; Mitchell, Matthew W.; Monlong, Jean; Mountcastle, Jacquelyn; Munson, Katherine M.; Mwaniki, Moses Njagi; Nattestad, Maria; Novak, Adam M.; Nurk, Sergey; Olsen, Hugh E.; Olson, Nathan D.; Pesout, Trevor; Phillippy, Adam M.; Popejoy, Alice B.; Porubsky, David; Prins, Pjotr; Puiu, Daniela; Rautiainen, Mikko; Regier, Allison A.; Rhie, Arang; Sacco, Samuel; Sanders, Ashley D.; Schneider, Valerie A.; Schultz, Baergen, I; Shafin, Kishwar; Sibbesen, Jonas A.; Siren, Jouni; Smith, Michael W.; Sofia, Heidi J.; Abou Tayoun, Ahmad N.; Thibaud-Nissen, Francoise; Tomlinson, Chad; Tricomi, Francesca Floriana; Villani, Flavia; Vollger, Mitchell R.; Wagner, Justin; Walenz, Brian; Wang, Ting; Wood, Jonathan M. D.; Zimin, Aleksey, V; Zook, Justin M.
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Modular automated microfluidic cell culture platform reduces glycolytic stress in cerebral cortex organoids
err2022-11-23
err23
errOAAI
errSeiler, Spencer T.; Mantalas, Gary L.; Selberg, John; Cordero, Sergio; Torres-Montoya, Sebastian; Baudin, Pierre, V; Ly, Victoria T.; Amend, Finn; Tran, Liam; Hoffman, Ryan N.; Rolandi, Marco; Green, Richard E.; Haussler, David; Salama, Sofie R.; Teodorescu, Mircea
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Whole-genome sequence and assembly of the Javan gibbon (Hylobates moloch)
err2022-09-23
err4
errOAAI
errEscalona, Merly; VanCampen, Jake; Maurer, Nicholas W.; Haukness, Marina; Okhovat, Mariam; Harris, Robert S.; Watwood, Allison; Hartley, Gabrielle A.; O'Neill, Rachel J.; Medvedev, Paul; Makova, Kateryna D.; Vollmers, Christopher; Carbone, Lucia; Green, Richard E.
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A polar bear paleogenome reveals extensive ancient gene flow from polar bears into brown bears
err2022-06-16
err16
PREAI
errWang, Ming-Shan; Murray, Gemma G. R.; Mann, Daniel; Groves, Pamela; Vershinina, Alisa O.; Supple, Megan A.; Kapp, Joshua D.; Corbett-Detig, Russell; Crump, Sarah E.; Stirling, Ian; Laidre, Kristin L.; Kunz, Michael; Dalen, Love; Green, Richard E.; Shapiro, Beth
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Genome Sequencing of a Gray Wolf from Peninsular India Provides New Insights into the Evolution and Hybridization of Gray Wolves
err2022-02-08
err7
errOAAI
errWang, Ming-Shan; Thakur, Mukesh; Jhala, Yadvendradev; Wang, Sheng; Srinivas, Yellapu; Dai, Shan-Shan; Liu, Zheng-Xi; Cheng, Hong-Man; Green, Richard E.; Koepfli, Klaus-Peter; Shapiro, Beth
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Deeply conserved synteny and the evolution of metazoan chromosomes
err2022-02-04
err75
errOAAI
errSimakov, Oleg; Bredeson, Jessen; Berkoff, Kodiak; Marletaz, Ferdinand; Mitros, Therese; Schultz, Darrin T.; O'Connell, Brendan L.; Dear, Paul; Martinez, Daniel E.; Steele, Robert E.; Green, Richard E.; David, Charles N.; Rokhsar, Daniel S.
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A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus (vol 112, pg 184, 2021)
err2021-08-26
err0
errOAAI
errHeaton, Michael P.; Smith, Timothy P. L.; Bickhart, Derek M.; Vander Ley, Brian L.; Kuehn, Larry A.; Oppenheimer, Jonas; Shafer, Wade R.; Schuetze, Fred T.; Stroud, Brad; McClure, Jennifer C.; Barfield, Jennifer P.; Blackburn, Harvey D.; Kalbfleisch, Theodore S.; Davenport, Kimberly M.; Kuhn, Kristen L.; Green, Richard E.; Shapiro, Beth; Rosen, Benjamin D.
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An ancestral recombination graph of human, Neanderthal, and Denisovan genomes
err2021-07-16
err32
errOAAI
errSchaefer, Nathan K.; Shapiro, Beth; Green, Richard E.
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An Annotated Draft Genome for the Andean Bear, Tremarctos ornatus
err2021-04-21
err7
errOAAI
errSaremi, Nedda F.; Oppenheimer, Jonas; Vollmers, Christopher; O'Connell, Brendan; Milne, Shard A.; Byrne, Ashley; Yu, Li; Ryder, Oliver A.; Green, Richard E.; Shapiro, Beth
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