arrow
Back
M

Mary J. Goldman

University of California System

43H-index
105Paper Count
3.4WCitation Count
Published Papers 25
Publication Date
Visualization and analysis of cancer genomics data using UCSC Xena
err2024-03-22
err0
PREAI
errGoldman, Mary; Craft, Brian; Zhu, Jingchun; Haussler, David
errShare
errSave
Visualization and analysis of cancer genomics data using UCSC Xena
err2023-04-04
err0
PREAI
errGoldman, Mary; Craft, Brian; Zhu, Jingchun; Haussler, David
errShare
errSave
A user guide for the online exploration and visualization of PCAWG data
err2020-07-07
err26
errOAAI
errGoldman, Mary J.; Zhang, Junjun; Fonseca, Nuno A.; Cortes-Ciriano, Isidro; Xiang, Qian; Craft, Brian; Pineiro-Yanez, Elena; O'Connor, Brian D.; Bazant, Wojciech; Barrera, Elisabet; Munoz-Pomer, Alfonso; Petryszak, Robert; Fuellgrabe, Anja; Al-Shahrour, Fatima; Keays, Maria; Haussler, David; Weinstein, John N.; Huber, Wolfgang; Valencia, Alfonso; Park, Peter J.; Papatheodorou, Irene; Zhu, Jingchun; Ferretti, Vincent; Vazquez, Miguel
errShare
errSave
Visualizing and interpreting cancer genomics data via the Xena platform
err2020-05-22
err2.3K
errOAAI
errGoldman, Mary J.; Craft, Brian; Hastie, Mim; Repecka, Kristupas; McDade, Fran; Kamath, Akhil; Banerjee, Ayan; Luo, Yunhai; Rogers, Dave; Brooks, Angela N.; Zhu, Jingchun; Haussler, David
errShare
errSave
Designing an intuitive visualization of BRCAness scores for clinicians
err2019-07-01
err0
PREAI
errAllegakoen, Hannah R.; Goldman, Mary; Caughey, Bennett; Consunji, Martin; Benz, Christopher C.; Haussler, David; Zhu, Jingchun; Collisson, Eric A.
errShare
errSave
UCSC Xena for cancer genomics visualization and interpretation
err2019-07-01
err3
PREAI
errGoldman, Mary; Craft, Brian; Zhu, Jingchun; Haussler, David
errShare
errSave
Cancer genomics visualization and interpretation using UCSC Xena
err2018-07-01
err1
PREAI
errGoldman, Mary; Craft, Brian; Zhu, Jingchun; Haussler, David
errShare
errSave
Pan-cancer study of recurrent and heterogeneous RNA aberrations and association with whole-genome variants
err2017-07-01
err0
PREAI
errAmin, Samirkumar; Awadalla, Philip; Biankin, Andrew; Boutros, Paul; Brazma, Alvis; Brooks, Angela Norie; Calabrese, Claudia; Chang, David; Chateigner, Aurelien; Chen, Ken; Chong, Zechen; Craft, Brian; Creighton, Chad; Demircioglu, Deniz; Fonseca, Nuno; Frenkel-Morgenstern, Milana; Getz, Gad; Goke, Jonathan; Goldman, Mary; Greger, Liliana; Haider, Syed; He, Yao; Hoadley, Katherine; Ji, Yuan; Kahles, Andre; Khurana, Ekta; Korbel, Jan; Lehmann, Kjong; Liang, Han; Liu, Fenglin; Marin, Maximillian; Meyerson, Matthew; Ojesina, Akinyemi; Ouellette, Francis; Pedamallu, Chandra; Perry, Marc; Ratsch, Gunnar; Schwarz, Roland; Shiraishi, Yuichi; Soulette, Cameron; Stegle, Oliver; Tan, Patrick; Valencia, Alfonso; Xiang, Linda; Yung, Christina; Zhang, Junjun; Zhang, Fan; Zhang, Zemin; Zhu, Jingchun
errShare
errSave
The UCSC Xena system for cancer genomics data visualization and interpretation
err2017-07-01
err43
PREAI
errGoldman, Mary; Craft, Brian; Zhu, Jingchun; Haussler, David
errShare
errSave
Toil enables reproducible, open source, big biomedical data analyses
err2017-04-11
err830
errOAAI
errVivian, John; Rao, Arjun Arkal; Nothaft, Frank Austin; Ketchum, Christopher; Armstrong, Joel; Novak, Adam; Pfeil, Jacob; Narkizian, Jake; Deran, Alden D.; Musselman-Brown, Audrey; Schmidt, Hannes; Amstutz, Peter; Craft, Brian; Goldman, Mary; Rosenbloom, Kate; Cline, Melissa; O'Connor, Brian; Hanna, Megan; Birger, Chet; Kent, W. James; Patterson, David A.; Joseph, Anthony D.; Zhu, Jingchun; Zaranek, Sasha; Getz, Gad; Haussler, David; Paten, Benedict
errShare
errSave
The UCSC Xena system for integrating and visualizing functional genomics
err2016-07-15
err6
PREAI
errGoldman, Mary; Craft, Brian; Zhu, Jingchun; Swatloski, Teresa; Cline, Melissa; Haussler, David
errShare
errSave
Using the UCSC Xena Platform to integrate, visualize, and analyze your own data in the context of large external genomic datasets
err2015-11-15
err2
PREAI
errZhu, Jingchun; Craft, Brian; Goldman, Mary; Cline, Melissa; Diekhans, Mark; Haussler, David
errShare
errSave
The UCSC Cancer Genomics Browser: update 2015
err2014-11-11
err248
errOAAI
errGoldman, Mary; Craft, Brian; Swatloski, Teresa; Cline, Melissa; Morozova, Olena; Diekhans, Mark; Haussler, David; Zhu, Jingchun
errShare
errSave
The UCSC Cancer Genomics Browser
err2014-10-28
err0
PREAI
errCraft, Brian; Elliott, Kyle; Goldman, Mary; Wilks, Christopher; Szeto, Christopher; Ma, Singer; Stuart, Josh; Zhu, Jingchun; Haussler, David
errShare
errSave
Exploring pediatric cancer genomics with the UCSC Cancer Genomics Browser
err2014-10-09
err0
PREAI
errCline, Melissa; Morozova, Olena; Swatloski, Teresa; Craft, Brian; Goldman, Mary; Haussler, David; Zhu, Jingchun
errShare
errSave
Exploring TCGA Pan-Cancer Data at the UCSC Cancer Genomics Browser
err2013-10-02
err243
errOAAI
errCline, Melissa S.; Craft, Brian; Swatloski, Teresa; Goldman, Mary; Ma, Singer; Haussler, David; Zhu, Jingchun
errShare
errSave
The UCSC Genome Browser database: extensions and updates 2013
err2012-11-15
err688
errOAAI
errMeyer, Laurence R.; Zweig, Ann S.; Hinrichs, Angie S.; Karolchik, Donna; Kuhn, Robert M.; Wong, Matthew; Sloan, Cricket A.; Rosenbloom, Kate R.; Roe, Greg; Rhead, Brooke; Raney, Brian J.; Pohl, Andy; Malladi, Venkat S.; Li, Chin H.; Lee, Brian T.; Learned, Katrina; Kirkup, Vanessa; Hsu, Fan; Heitner, Steve; Harte, Rachel A.; Haeussler, Maximilian; Guruvadoo, Luvina; Goldman, Mary; Giardine, Belinda M.; Fujita, Pauline A.; Dreszer, Timothy R.; Diekhans, Mark; Cline, Melissa S.; Clawson, Hiram; Barber, Galt P.; Haussler, David; Kent, W. James
errShare
errSave
The UCSC Cancer Genomics Browser: update 2013
err2012-10-29
err153
errOAAI
errGoldman, Mary; Craft, Brian; Swatloski, Teresa; Ellrott, Kyle; Cline, Melissa; Diekhans, Mark; Ma, Singer; Wilks, Chris; Stuart, Josh; Haussler, David; Zhu, Jingchun
errShare
errSave
UCSC Cancer Genomics Browser 2.0
err2012-04-01
err0
PREAI
errZhu, Jingchun; Craft, Brian; Swatloski, Teresa; Ellrott, Kyle; Goldman, Mary; Wilks, Christopher; Ma, Singer; Szeto, Christopher; Collisson, Eric; Haussler, David
errShare
errSave
The UCSC Genome Browser database: extensions and updates 2011
err2011-11-15
err295
errOAAI
errDreszer, Timothy R.; Karolchik, Donna; Zweig, Ann S.; Hinrichs, Angie S.; Raney, Brian J.; Kuhn, Robert M.; Meyer, Laurence R.; Wong, Mathew; Sloan, Cricket A.; Rosenbloom, Kate R.; Roe, Greg; Rhead, Brooke; Pohl, Andy; Malladi, Venkat S.; Li, Chin H.; Learned, Katrina; Kirkup, Vanessa; Hsu, Fan; Harte, Rachel A.; Guruvadoo, Luvina; Goldman, Mary; Giardine, Belinda M.; Fujita, Pauline A.; Diekhans, Mark; Cline, Melissa S.; Clawson, Hiram; Barber, Galt P.; Haussler, David; Kent, W. James
errShare
errSave