Richard Lupat - Publications, H-index & Citations

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Richard Lupat

Peter MacCallum Cancer Centre

11H-index

44Paper Count

1.3KCitation Count

Published Papers 16

Publication Date

macpie: scalable workflow for high-throughput transcriptomic profiling

Computational and Structural Biotechnology Journal

IF4.1

2025-11-07

OAAI

Nenad Bartonicek; Xin Liu; Laura Twomey; Michelle Meier; Richard Lupat; Stuart Craig; David Yoannidis; Jason Li; Tim Semple; Kaylene J Simpson; Mark X Li; Susanne Ramm

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Using artificial intelligence (AI) to model clinical variant reporting for next generation sequencing (NGS) oncology assays

BioData Mining

IF6.1

2025-10-31

OAAI

Kenneth D. Doig; Rashindrie Perera; Yamuna Kankanige; Andrew Fellowes; Jason Li; Richard Lupat; Ella R. Thompson; Piers Blombery; Stephen B. Fox

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Phylogenetic analysis of paired breast carcinomas identifies genetic events associated with clonal recurrence and invasive progression

The Journal of Pathology

IF5.2

2025-10-30

OAAI

Tanjina Kader; Maia Zethoven; Sakshi Mahale; Hugo Saunders; Lauren Tjoeka; Rebecca Lehmann; Madawa W Jayawardana; Jia-Min Pang; Dorothea Lesche; Neeha Rajan; Timothy Semple; Jue Er Amanda Lee; Richard Lupat; David J Byrne; Siobhan Hughes; Hoa Nguyen; Siqi Lai; Maree Pechlivanis; Olivia Craig; Lisa Devereux; Eloise House; Sureshni I Jayasinghe; Tom L Kaufmann; Roland F Schwarz; Andrew R Green; Islam M Miligy; Margaret Cummings; Sunil Lakhani; Ian G Campbell; Emad Rakha; Stephen B Fox; G Bruce Mann; Kylie L Gorringe

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The implementation of an RNA-based gene fusion assay into a diagnostic oncology department: an Australian perspective

Pathology

IF3

2025-03-01

PREAI

Christopher R. McEvoy; Catherine Mitchell; Owen W.J. Prall; Huiling Xu; Andrew P. Fellowes; David Y. Choong; Evangeline Buela; Roxane Legaie; Jiaan Yu; Richard Lupat; Christopher M. Angel; Christine Khoo; Jia-Min Pang; Cameron Snell; Stephen B. Fox; Jeremy Lewin

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Moanna: Multi-Omics Autoencoder-Based Neural Network Algorithm for Predicting Breast Cancer Subtypes

IEEE ACCESS

IF3.6

2023-01-01

OAAI

Lupat, Richard; Perera, Rashindrie; Loi, Sherene; Li, Jason

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Molecular and genomic characterisation of a panel of human anal cancer cell lines

CELL DEATH & DISEASE

IF9.6

2021-10-18

OAAI

Guerra, Glen R.; Kong, Joseph C.; Millen, Rosemary M.; Read, Matthew; Liu, David S.; Roth, Sara; Sampurno, Shienny; Sia, Joseph; Bernardi, Maria-Pia; Chittleborough, Timothy J.; Behrenbruch, Corina C.; Teh, Jiasian; Xu, Huiling; Haynes, Nicole M.; Yu, Jiaan; Lupat, Richard; Hawkes, David; Di Costanzo, Natasha; Tothill, Richard W.; Mitchell, Catherine; Ngan, Samuel Y.; Heriot, Alexander G.; Ramsay, Robert G.; Phillips, Wayne A.

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CNspector: a web-based tool for visualisation and clinical diagnosis of copy number variation from next generation sequencing (vol 9, 6426, 2019)

SCIENTIFIC REPORTS

IF3.9

2020-06-23

OAAI

Markham, John F.; Yerneni, Satwica; Ryland, Georgina L.; Leong, Huei San; Fellowes, Andrew; Thompson, Ella R.; De Silva, Wasanthi; Kumar, Amit; Lupat, Richard; Li, Jason; Ellul, Jason; Fox, Stephen; Dickinson, Michael; Papenfuss, Anthony T.; Blombery, Piers

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The molecular origin and taxonomy of mucinous ovarian carcinoma

NATURE COMMUNICATIONS

IF15.7

2019-09-02

112

OAAI

Cheasley, Dane; Wakefield, Matthew J.; Ryland, Georgina L.; Allan, Prue E.; Alsop, Kathryn; Amarasinghe, Kaushalya C.; Ananda, Sumitra; Anglesio, Michael S.; Au-Yeung, George; Bohm, Maret; Bowtell, David Dl; Brand, Alison; Chenevix-Trench, Georgia; Christie, Michael; Chiew, Yoke-Eng; Churchman, Michael; DeFazio, Anna; Demeo, Renee; Dudley, Rhiannon; Fairweather, Nicole; Fedele, Clare G.; Fereday, Sian; Fox, Stephen B.; Gilks, C. Blake; Gourley, Charlie; Hacker, Neville F.; Hadley, Alison M.; Hendley, Joy; Ho, Gwo-Yaw; Hughes, Siobhan; Hunstman, David G.; Hunter, Sally M.; Jobling, Tom W.; Kalli, Kimberly R.; Kaufmann, Scott H.; Kennedy, Catherine J.; Kobel, Martin; Le Page, Cecile; Li, Jason; Lupat, Richard; McNally, Orla M.; McAlpine, Jessica N.; Mes-Masson, Anne-Marie; Mileshkin, Linda; Provencher, Diane M.; Pyman, Jan; Rahimi, Kurosh; Rowley, Simone M.; Salazar, Carolina; Samimi, Goli; Saunders, Hugo; Semple, Timothy; Sharma, Ragwha; Sharpe, Alice J.; Stephens, Andrew N.; Thio, Niko; Torres, Michelle C.; Traficante, Nadia; Xing, Zhongyue; Zethoven, Magnus; Antill, Yoland C.; Scott, Clare L.; Campbell, Ian G.; Gorringe, Kylie L.

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CNspector: a web-based tool for visualisation and clinical diagnosis of copy number variation from next generation sequencing

SCIENTIFIC REPORTS

IF3.9

2019-04-23

OAAI

Markham, John F.; Yerneni, Satwica; Ryland, Georgina L.; San Leong, Huei; Fellowes, Andrew; Thompson, Ella R.; De Silva, Wasanthi; Kumar, Amit; Lupat, Richard; Li, Jason; Ellul, Jason; Fox, Stephen; Dickinson, Michael; Papenfuss, Anthony T.; Blombery, Piers

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Mutations in RECQL are not associated with breast cancer risk in an Australian population

NATURE GENETICS

IF31.8

2018-09-17

PREAI

Li, Na; Rowley, Simone M.; Goode, David L.; Amarasinghe, Kaushalya C.; McInerny, Simone; Devereux, Lisa; Wong-Brown, Michelle W.; Lupat, Richard; Lee, Jue Er Amanda; Hughes, Siobhan; Thompson, Ella R.; Zethoven, Magnus; Li, Jason; Trainer, Alison H.; Gorringe, Kylie L.; Scott, Rodney J.; James, Paul A.; Campbell, Ian G.

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Evaluating the breast cancer predisposition role of rare variants in genes associated with low-penetrance breast cancer risk SNPs

BREAST CANCER RESEARCH

IF5.6

2018-01-09

OAAI

Li, Na; Rowley, Simone M.; Thompson, Ella R.; McInerny, Simone; Devereux, Lisa; Amarasinghe, Kaushalya C.; Zethoven, Magnus; Lupat, Richard; Goode, David; Li, Jason; Trainer, Alison H.; Gorringe, Kylie L.; James, Paul A.; Campbell, Ian G.

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TERT structural rearrangements in metastatic pheochromocytomas

ENDOCRINE-RELATED CANCER

IF4.6

2018-01-01

OAAI

Dwight, Trisha; Flynn, Aidan; Amarasinghe, Kaushalya; Benn, Diana E.; Lupat, Richard; Li, Jason; Cameron, Daniel L.; Hogg, Annette; Balachander, Shiva; Candiloro, Ida L. M.; Wong, Stephen Q.; Robinson, Bruce G.; Papenfuss, Anthony T.; Gill, Anthony J.; Dobrovic, Alexander; Hicks, Rodney J.; Clifton-Bligh, Roderick J.; Tothill, Richard W.

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Genomic characterisation of Eμ-Myc mouse lymphomas identifies Bcor as a Myc co-operative tumour-suppressor gene

NATURE COMMUNICATIONS

IF15.7

2017-03-06

OAAI

Lefebure, Marcus; Tothill, Richard W.; Kruse, Elizabeth; Hawkins, Edwin D.; Shortt, Jake; Matthews, Geoffrey M.; Gregory, Gareth P.; Martin, Benjamin P.; Kelly, Madison J.; Todorovski, Izabela; Doyle, Maria A.; Lupat, Richard; Li, Jason; Schroeder, Jan; Wall, Meaghan; Craig, Stuart; Poortinga, Gretchen; Cameron, Don; Bywater, Megan; Kats, Lev; Gearhart, Micah D.; Bardwell, Vivian J.; Dickins, Ross A.; Hannan, Ross D.; Papenfuss, Anthony T.; Johnstone, Ricky W.

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UV-Associated Mutations Underlie the Etiology of MCV-Negative Merkel Cell Carcinomas

CANCER RESEARCH

IF16.6

2015-12-14

259

OAAI

Wong, Stephen Q.; Waldeck, Kelly; Vergara, Ismael A.; Schroeder, Jan; Madore, Jason; Wilmott, James S.; Colebatch, Andrew J.; De Paoli-Iseppi, Ricardo; Li, Jason; Lupat, Richard; Semple, Timothy; Arnau, Gisela Mir; Fellowes, Andrew; Leonard, J. Helen; Hruby, George; Mann, Graham J.; Thompson, John F.; Cullinane, Carleen; Johnston, Meredith; Shackleton, Mark; Sandhu, Shahneen; Bowtell, David D. L.; Johnstone, Ricky W.; Fox, Stephen B.; McArthur, Grant A.; Papenfuss, Anthony T.; Scolyer, Richard A.; Gill, Anthony J.; Hicks, Rodney J.; Tothill, Richard W.

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Prevalence of PALB2 mutations in Australian familial breast cancer cases and controls

BREAST CANCER RESEARCH

IF5.6

2015-08-19

OAAI

Thompson, Ella R.; Gorringe, Kylie L.; Rowley, Simone M.; Wong-Brown, Michelle W.; McInerny, Simone; Li, Na; Trainer, Alison H.; Devereux, Lisa; Doyle, Maria A.; Li, Jason; Lupat, Richard; Delatycki, Martin B.; Mitchell, Gillian; James, Paul A.; Scott, Rodney J.; Campbell, Ian G.

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Merkel cell carcinomas in Australia have distinct mutation profiles reflecting viral etiology and UV-related DNA damage

CANCER RESEARCH

IF16.6

2015-08-01

PREAI

Wong, Stephen Q.; Waldeck, Kelly; Vergara, Ismael A.; Li, Jason; Lupat, Richard; Semple, Timothy; Cullinane, Carleen; Arnau, Gisela Mir; Johnston, Meredith; Hogg, Annette; Papenfuss, Anthony T.; Fox, Stephen; McArthur, Grant; Gill, Anthony; Hicks, Rodney J.; Tothilli, Richard W.

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Research Directions