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Association between transcriptomic metrics of exogenous antigen presentation and adaptive immunity with locoregional recurrence in localized estrogen receptor negative breast cancer: retrospective review of multi-institutional datasets Robinson, Timothy J.; Liveringhouse, Casey L.; Wilson, Christopher; Friedman, Sam; Nakashima, Justyn; Mills, Matthew N.; Purcell, Jacob D.; Figura, Nicholas B.; Du, Dongliang; Thapa, Ram; Welsh, Eric; Ahmed, Kamran A.; Grass, G. Daniel; Fridley, Brooke L.; Diaz, Roberto Share Save
A genome-wide association study using HapMap cell lines reveals modulators of cellular response to cyclophosphamide Gbadamosi, Mohammed O.; Bhise, Neha; Ghosh, Taraswi Mitra; Molchan, Elizabeth K.; Streeks, Kathleen; Puglise, Jason; Ohaegbulam, Alyssa; Makarem, Mariana; Olabige, Oluwaseyi; Yang, Changlin; Ricks-Santi, Luisel; Mitchell, Duane A.; Fridley, Brooke L. Share Save
Genomic, transcriptomic, and immunogenomic landscape of over 1300 sarcomas of diverse histology subtypes Soupir, Alex; Ospina, Oscar E.; Hampton, Oliver; Churchman, Michelle; Radmacher, Michael; Hedges, Dale; Mckean, David; Agius, Phaedra; Zeeshan, Saman; Seligson, Nathan D.; Pollock, Raphael; Liebner, David; Chen, James L.; Tinoco, Gabriel; Salhia, Bodour; Mccarter, Martin; Wilky, Breelyn A.; Miller, Benjamin J.; Cavnar, Michael J.; Groundland, John S.; Schneider, Bryan P.; Riedlinger, Gregory; Edge, Stephen B.; Moskaluk, Christopher A.; Cardona, Kenneth; Naqash, Abdul Rafeh; Gonzalez, Ricardo J.; Mullinax, John E.; Joyce, David M.; Binitie, Odion; Douglas Letson, G.; Naghavi, Arash O.; Druta, Mihaela; Reed, Damon R.; Siegel, Erin M.; Teer, Jamie K.; Fridley, Brooke L.; Brohl, Andrew S. Share Save
Associations between Parity, History of Breastfeeding, and T-cell Profile of Ovarian Tumors Mongiovi, Jennifer M.; Townsend, Mary K.; Vitonis, Allison F.; Harris, Holly R.; Doherty, Jennifer A.; Babic, Ana; Hecht, Jonathan L.; Soong, T. Rinda; Titus, Linda; Conejo-Garcia, Jose R.; Fridley, Brooke L.; Tworoger, Shelley S.; Terry, Kathryn L.; Sasamoto, Naoko Share Save
Increased spatial coupling of integrin and collagen IV in the immunoresistant clear-cell renal-cell carcinoma tumor microenvironment Soupir, Alex C.; Hayes, Mitchell T.; Peak, Taylor C.; Ospina, Oscar; Chakiryan, Nicholas H.; Berglund, Anders E.; Stewart, Paul A.; Nguyen, Jonathan; Segura, Carlos Moran; Francis, Natasha L.; Echevarria, Paola M. Ramos; Chahoud, Jad; Li, Roger; Tsai, Kenneth Y.; Balasi, Jodi A.; Peres, Yamila Caraballo; Dhillon, Jasreman; Martinez, Lindsey A.; Gloria, Warren E.; Schurman, Nathan; Kim, Sean; Gregory, Mark; Mule, James; Fridley, Brooke L.; Manley, Brandon J. Share Save
Preexisting Skin-Resident CD8 and γδ T-cell Circuits Mediate Immune Response in Merkel Cell Carcinoma and Predict Immunotherapy Efficacy Reinstein, Zachary Z.; Zhang, Yue; Ospina, Oscar E.; Nichols, Matt D.; Chu, Victoria A.; Pulido, Alvaro de Mingo; Prieto, Karol; Nguyen, Jonathan V.; Yin, Rui; Segura, Carlos Moran; Usman, Ahmed; Sell, Brittney; Ng, Spencer; de la Iglesia, Janis V.; Chandra, Sunandana; Sosman, Jeffrey A.; Cho, Raymond J.; Cheng, Jeffrey B.; Ivanova, Ellie; Koralov, Sergei B.; Slebos, Robbert J. C.; Chung, Christine H.; Khushalani, Nikhil I.; Messina, Jane L.; Sarnaik, Amod A.; Zager, Jonathan S.; Sondak, Vernon K.; Vaske, Charles; Kim, Sungjune; Brohl, Andrew S.; Mi, Xinlei; Pierce, Brian G.; Wang, Xuefeng; Fridley, Brooke L.; Tsai, Kenneth Y.; Choi, Jaehyuk Share Save
Impact of insomnia on ovarian cancer risk and survival: a Mendelian randomization study Wang, Fleming; Reid, Brett M.; Richmond, Rebecca C.; Lane, Jacqueline M.; Saxena, Richa; Gonzalez, Brian D.; Fridley, Brooke L.; Redline, Susan; Tworoger, Shelley S.; Wang, Xuefeng Share Save
Spatial transcriptomics analysis identifies a tumorpromoting function of the meningeal stroma in melanoma leptomeningeal disease Alhaddad, Hasan; Ospina, Oscar E.; Khaled, Mariam Lotfy; Ren, Yuan; Vallebuona, Ethan; Boozo, Mohammad Baraa; Forsyth, Peter A.; Pina, Yolanda; Macaulay, Robert; Law, Vincent; Tsai, Kenneth Y.; Cress, W. Douglas; Fridley, Brooke; Smalley, Inna Share Save
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Genomic landscape and estimation of immune infiltration of soft tissue sarcoma histology subtypes from the ORIEN network Soupir, Alex C.; Ospina, Oscar E.; Hedges, Dale; Teer, Jamie K.; Radmacher, Michael D.; McKean, David M.; Seligson, Nathan; McCarter, Martin; Wilkey, Breelyn; Riedlinger, Greg; Groundland, John; Miller, Benjamin J.; Schneider, Bryan; Patel, Reema; Rafeh-Naqash, Abdul; Edge, Stephen; Salhia, Bodour; Moskaluk, Chris; Johns, Maggy; Churchman, Michelle L.; Hampton, Oliver; Liebner, David; Fridley, Brooke L.; Brohl, Andrew S. Share Save
Multi-omic landscape of squamous cell lung cancer Narvaez-Bandera, Isis Y.; Lui, Ashley; Welsh, Eric; Ercan, Dalia; Rubio, Vanessa; Ackerman, Hayley; Li, Guohui; Darville, Lancia; Liu, Min; Fang, Bin; Eschrich, Steven; Fridley, Brooke; Koomen, John; Haura, Eric; DeNicola, Gina M.; Flores, Elsa; Stewart, Paul Share Save
Comparison of spatial co-localization measures for studying the tumor immune microenvironment with application to ovarian cancer Fridley, Brooke L.; Soupir, Alex; Wrobel, Julia; Colin-Leitzinger, Christelle; Townsend, Mary K.; Lawson, Andrew B.; Terry, Kathryn L.; Schildkraut, Joellen M.; Tworoger, Shelley S.; Peres, Lauren C. Share Save
Increased spatial coupling of integrin and collagen IV in the immunoresistant clear cell renal cell carcinoma tumor microenvironment Soupir, Alex C.; Hayes, Mitchell T.; Peak, Taylor C.; Ospina, Oscar E.; Chakiryan, Nicholas H.; Berglund, Anders E.; Stewart, Paul A.; Nguyen, Jonathan; Moran-Segura, Carlos M.; Francis, Natasha L.; Ramos-Echevarria, Paola M.; Chahoud, Jad; Li, Roger; Tsai, Kenneth Y.; Balasi, Jodi A.; Caraballo-Perez, Yamila; Dhillon, Jasreman; Martinez, Lindsey A.; Gloria, Warren E.; Schurman, Nathan; Kim, Sean; Gregory, Mark; Mule, James J.; Fridley, Brooke L.; Manley, Brandon J. Share Save
spatialGE: Empowering researchers to study the tumor microenvironment leveraging spatial transcriptomics Ospina, Oscar; Manjarres-Betancur, Roberto; Gonzalez-Calderon, Guillermo; Soupir, Alex C.; Smalley, Inna; Tsai, Kenneth; Markowitz, Joseph; Berglund, Anders; Yu, Xiaoqing; Fridley, Brooke L. Share Save
Lifetime Exposure to Cigarette Smoke, B-Cell Tumor Immune Infiltration, and Immunoglobulin Abundance in Ovarian Tumors Hathaway, Cassandra A.; Townsend, Mary K.; Wang, Tianyi; Vinci, Christine; Jake-Schoffman, Danielle E.; Hecht, Jonathan L.; Saeed-Vafa, Daryoush; Moran Segura, Carlos; Nguyen, Jonathan V.; Conejo-Garcia, Jose R.; Fridley, Brooke L.; Tworoger, Shelley S. Share Save
Influence of pre-diagnosis aspirin use on epithelial ovarian cancer tumor immune microenvironment markers: results from the Nurses' Health Study (NHS) and NHSII Meagher, Nicola S.; Hathaway, Cassandra; Townsend, Mary K.; Barnard, Mollie E.; Conejo-Garcia, Jose R.; Fridley, Brooke L.; Saeed-Vafa, Daryoush; Trabert, Britton; Tworoger, Shelley S.; Merritt, Melissa A. Share Save
Modeling phenotypic heterogeneity towards evolutionarily inspired osteosarcoma therapy Welch, Darcy L.; Fridley, Brooke L.; Cen, Ling; Teer, Jamie K.; Yoder, Sean J.; Pettersson, Fredrik; Xu, Liping; Cheng, Chia-Ho; Zhang, Yonghong; Alexandrow, Mark G.; Xiang, Shengyan; Robertson-Tessi, Mark; Brown, Joel S.; Metts, Jonathan; Brohl, Andrew S.; Reed, Damon R. Share Save
The relationship of lifetime history of depression on the ovarian tumor immune microenvironment Hathaway, Cassandra A.; Townsend, Mary K.; Conejo-Garcia, Jose R.; Fridley, Brooke L.; Segura, Carlos Moran; Nguyen, Jonathan V.; Armaiz-Pena, Guillermo N.; Sasamoto, Naoko; Saeed-Vafa, Daryoush; Terry, Kathryn L.; Kubzansky, Laura D.; Tworoger, Shelley S. Share Save
Contraception and ovarian cancer risk by tumor immune profiles Mongiovi, Jennifer; Babic, Ana; Sasamoto, Naoko; Townsend, Mary; Vitonis, Allison; Hecht, Jonathan; Conejo-Garcia, Jose; Fridley, Brooke; Tworoger, Shelley; Terry, Kathryn Share Save
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