Not logged inpVACview: an interactive visualization tool for efficient neoantigen prioritization and selection
Xia, Huiming; Hoang, My H.; Schmidt, Evelyn; Kiwala, Susanna; Mcmichael, Joshua; Skidmore, Zachary L.; Fisk, Bryan; Song, Jonathan J.; Hundal, Jasreet; Mooney, Thomas; Walker, Jason R.; Goedegebuure, S. Peter; Miller, Christopher A.; Gillanders, William E.; Griffith, Obi L.; Griffith, Malachi .png)
Share.png)
SaveDGIdb 5.0: rebuilding the drug-gene interaction database for precision medicine and drug discovery platformsCannon, Matthew; Stevenson, James; Stahl, Kathryn; Basu, Rohit; Coffman, Adam; Kiwala, Susanna; McMichael, Joshua F.; Kuzma, Kori; Morrissey, Dorian; Cotto, Kelsy; Mardis, Elaine R.; Griffith, Obi L.; Griffith, Malachi; Wagner, Alex H. Share Save Computational prediction of MHC anchor locations guides neoantigen identification and prioritizationXia, Huiming; McMichael, Joshua; Becker-Hapak, Michelle; Onyeador, Onyinyechi C.; Buchli, Rico; McClain, Ethan; Pence, Patrick; Supabphol, Suangson; Richters, Megan M.; Basu, Anamika; Ramirez, Cody A.; Puig-Saus, Cristina; Cotto, Kelsy C.; Freshour, Sharon L.; Hundal, Jasreet; Kiwala, Susanna; Goedegebuure, S. Peter; Johanns, Tanner M.; Dunn, Gavin P.; Ribas, Antoni; Miller, Christopher A.; Gillanders, William E.; Fehniger, Todd A.; Griffith, Obi L.; Griffith, Malachi Share Save ClinGen Somatic and CIViC collaborate to comprehensively evaluate somatic variants in cancerSaliba, Jason; Danos, Arpad; Krysiak, Kilannin; Coffman, Adam; Kiwala, Susanna; McMichael, Joshua; Grisdale, Cameron J.; King, Ian; Selvarajah, Shamini; Xu, Xinjie; Kanagal-Shamanna, Rashmi; Satgunaseelan, Laveniya; Meredith, David; Evans, Mark; Mullighan, Charles G.; Akkari, Yassmine; Raca, Gordana; Roy, Angshumoy; Wagner, Alex H.; Govindan, Ramaswamy; Griffith, Obi L.; Griffith, Malachi Share Save CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebaseKrysiak, Kilannin; Danos, Arpad M.; Saliba, Jason; McMichael, Joshua F.; Coffman, Adam C.; Kiwala, Susanna; Barnell, Erica K.; Sheta, Lana; Grisdale, Cameron J.; Kujan, Lynzey; Pema, Shahil; Lever, Jake; Ridd, Sarah; Spies, Nicholas C.; Andric, Veronica; Chiorean, Andreea; Rieke, Damian T.; Clark, Kaitlin A.; Reisle, Caralyn; Venigalla, Ajay C.; Evans, Mark; Jani, Payal; Takahashi, Hideaki; Suda, Avila; Horak, Peter; Ritter, Deborah, I; Zhou, Xin; Ainscough, Benjamin J.; Delong, Sean; Kesserwan, Chimene; Lamping, Mario; Shen, Haolin; Marr, Alex R.; Hoang, My H.; Singhal, Kartik; Khanfar, Mariam; Li, Brian, V; Lin, Wan-Hsin; Terraf, Panieh; Corson, Laura B.; Salama, Yasser; Campbell, Katie M.; Farncombe, Kirsten M.; Ji, Jianling; Zhao, Xiaonan; Xu, Xinjie; Kanagal-Shamanna, Rashmi; King, Ian; Cotto, Kelsy C.; Skidmore, Zachary L.; Walker, Jason R.; Zhang, Jinghui; Milosavljevic, Aleksandar; Patel, Ronak Y.; Giles, Rachel H.; Kim, Raymond H.; Schriml, Lynn M.; Mardis, Elaine R.; Jones, Steven J. M.; Raca, Gordana; Rao, Shruti; Madhavan, Subha; Wagner, Alex H.; Griffith, Malachi; Griffith, Obi L. Share Save A community approach to the cancer-variant-interpretation bottleneckKrysiak, Kilannin; Danos, Arpad M.; Kiwala, Susanna; McMichael, Joshua F.; Coffman, Adam C.; Barnell, Erica K.; Sheta, Lana; Saliba, Jason; Grisdale, Cameron J.; Kujan, Lynzey; Pema, Shahil; Lever, Jake; Spies, Nicholas C.; Chiorean, Andreea; Rieke, Damian T.; Clark, Kaitlin A.; Jani, Payal; Takahashi, Hideaki; Horak, Peter; Ritter, Deborah, I; Zhou, Xin; Ainscough, Benjamin J.; Delong, Sean; Lamping, Mario; Marr, Alex R.; Li, Brian, V; Lin, Wan-Hsin; Terraf, Panieh; Salama, Yasser; Campbell, Katie M.; Farncombe, Kirsten M.; Ji, Jianling; Zhao, Xiaonan; Xu, Xinjie; Kanagal-Shamanna, Rashmi; Cotto, Kelsy C.; Skidmore, Zachary L.; Walker, Jason R.; Zhang, Jinghui; Milosavljevic, Aleksandar; Patel, Ronak Y.; Giles, Rachel H.; Kim, Raymond H.; Schriml, Lynn M.; Mardis, Elaine R.; Jones, Steven J. M.; Raca, Gordana; Rao, Shruti; Madhavan, Subha; Wagner, Alex H.; Griffith, Obi L.; Griffith, Malachi Share Save Share Save CIViCpy: A Python Software Development and Analysis Toolkit for the CIViC KnowledgebaseWagner, Alex H.; Kiwala, Susanna; Coffman, Adam C.; McMichael, Joshua F.; Cotto, Kelsy C.; Mooney, Thomas B.; Barnell, Erica K.; Krysiak, Kilannin; Danos, Arpad M.; Walker, Jason; Griffith, Obi L.; Griffith, Malachi Share Save Adding CIViC knowledge to variant annotation pipelines with CIViCpyKiwala, Susanna; Wagner, Alex H.; Coffman, Adam C.; McMichael, Joshua F.; Cotto, Kelsy C.; Mooney, Thomas B.; Barnell, Erica K.; Krysiak, Kilannin; Danos, Arpad M.; Walker, Jason M.; Griffith, Obi L.; Griffith, Malachi Share Save Evolution of the CIViC knowledgebase for community driven curation of clinical variants in cancerDanos, Arpad; Krysiak, Kilannin; Barnell, Erica K.; Coffman, Adam C.; McMichael, Joshua F.; Kiwala, Susanna; Spies, Nicholas C.; Sheta, Lana M.; Pema, Shahil P.; Kujan, Lynzey; Clark, Kaitlin A.; Anderson, Sydney; Wollam, Amber; Li, Brian; Guerra, Justin; Rao, Shruti; Ritter, Deborah, I; Grisdale, Cameron J.; Raca, Gordana; Wagner, Alex H.; Madhavan, Subha; Griffith, Malachi; Griffith, Obi L. Share Save Standard operating procedure for curation and clinical interpretation of variants in cancerDanos, Arpad M.; Krysiak, Kilannin; Barnell, Erica K.; Coffman, Adam C.; McMichael, Joshua F.; Kiwala, Susanna; Spies, Nicholas C.; Sheta, Lana M.; Pema, Shahil P.; Kujan, Lynzey; Clark, Kaitlin A.; Wollam, Amber Z.; Rao, Shruti; Ritter, Deborah I.; Sonkin, Dmitriy; Raca, Gordana; Lin, Wan-Hsin; Grisdale, Cameron J.; Kim, Raymond H.; Wagner, Alex H.; Madhavan, Subha; Griffith, Malachi; Griffith, Obi L. Share Save Accounting for proximal variants improves neoantigen predictionHundal, Jasreet; Kiwala, Susanna; Feng, Yang-Yang; Liu, Connor J.; Govindan, Ramaswamy; Chapman, William C.; Uppaluri, Ravindra; Swamidass, S. Joshua; Griffith, Obi L.; Mardis, Elaine R.; Griffith, Malachi Share Save Adapting crowdsourced clinical cancer curation in CIViC to the ClinGen minimum variant level data community-driven standardsDanos, Arpad M.; Ritter, Deborah I.; Wagner, Alex H.; Krysiak, Kilannin; Sonkin, Dmitriy; Micheel, Christine; McCoy, Matthew; Rao, Shruti; Raca, Gordana; Boca, Simina M.; Roy, Angshumoy; Barnell, Erica K.; McMichael, Joshua F.; Kiwala, Susanna; Coffman, Adam C.; Kujan, Lynzey; Kulkarni, Shashikant; Griffith, Malachi; Madhavan, Subha; Griffith, Obi L. Share Save Expanding the CIViC variant to complex combinations of regions in the cancer genomeDanos, Arpad; Krysiak, Kilannin; Wagner, Alex; Kiwala, Susanna; McMichael, Joshua; Coffman, Adam; Barnell, Erica; Feng, Yang-Yang; Ainscough, Benjamin; Ramirez, Cody; Griffith, Malachi; Griffith, Obi Share Save Share Save Implementing evolving clinical standards in a variant interpretation knowledgebaseKrysiak, Kilannin; Danos, Arpad M.; Wagner, Alex H.; Kiwala, Susanna; McMichael, Joshua F.; Coffman, Adam C.; Barnell, Erica K.; Feng, Yan-Yang; Ainscough, Benjamin J.; Ramirez, Cody A.; Griffith, Malachi; Griffith, Obi L. Share Save 
.png){kind=icon}
.png){kind=icon}
.png){kind=icon}
.png){kind=icon}
.png){kind=icon}
