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J

John B. Cole

North Carolina State University

62H-index
292Paper Count
1.4WCitation Count
Published Papers 126
Publication Date
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Pangenome-based structural variant imputation enables large-scale genotype-phenotype studies in dairy cattle
errNature Communications
IF15.7
err2026-07-03
err0
errOAAI
errLiu Yang; Junjian Wang; Kristen Kuhn; Wenli Li; Geoffrey Zanton; Mahesh Neupane; Clarissa Boschiero; John B. Cole; Bingjie Li; Congjun Li; Ransom L. Baldwin, VI; Curtis P. Van Tassell; Benjamin D. Rosen; Timothy P. L. Smith; Jicai Jiang; Lingzhao Fang; Li Ma; George E. Liu
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Effects of ROH-based versus GRM-based future inbreeding penalties on genetic gain, variance components, and inbreeding depression in dairy cattle
errJournal of Dairy Science
IF4.4
err2026-05-09
err0
errOAAI
errC. Maltecca; J. Jiang; J.B. Cole; C.F. Baes; L. Ma; F. Tiezzi
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errSave
Phased-assembly-driven pangenome graphs for structural variant genotyping and complex trait mapping in dairy cattle
errNature Communications
IF15.7
err2026-01-30
err0
errOAAI
errLiu Yang; Yahui Gao; Kristen L. Kuhn; Nayan Bhowmik; Wenli Li; Geoffrey Zanton; Lingzhao Fang; John B. Cole; Congjun Li; Ransom L. Baldwin, VI; Curtis P. Van Tassell; Benjamin D. Rosen; Li Ma; Timothy P. L. Smith; George E. Liu
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errSave
243 Genetic parameters for calving ease on beef-on-dairy.
errJournal of Animal Science
IF2.9
err2025-10-04
err0
errOAAI
errArielly Oliveira Garcia; John B Cole; Ashley A Mikush; Shogo Tsuruta; Simone E F Guimarães; Ignacy Misztal; Daniela Lourenco
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errSave
Award Talk: From genomics to herd improvement: Pioneering strategies in dairy cattle breeding.
errJOURNAL OF ANIMAL SCIENCE
IF2.9
err2025-10-01
err0
errOAAI
errCole, John B.
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Genetic background of calving ease in beef-on-dairy
errJournal of Dairy Science
IF4.4
err2025-10-01
err0
errOAAI
errArielly O. Garcia; Ashley A. Mikush; John B. Cole; Shogo Tsuruta; Ignacy Misztal; Simone E.F. Guimarães; Daniela Lourenco
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errSave
Using saturation rational function models to calculate yield adjustment factors across varied milking frequencies
errJDS COMMUNICATIONS
IF2.2
err2025-10-01
err0
errOAAI
errWu, Xiao-Lin; Cole, John; Miles, Asha M.; VanRaden, Paul M.
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Genome-wide association study and fine-mapping using imputed sequences to prioritize candidate genes for 30 complex traits in 50,309 Holstein bulls
errJournal of Dairy Science
IF4.4
err2025-09-03
err0
errOAAI
errJunjian Wang; Yahui Gao; Sajjad Toghiani; John B. Cole; Christian Maltecca; Li Ma; Jicai Jiang
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errSave
Are there too many traits in our selection indices?
errJournal of Dairy Science
IF4.4
err2025-09-03
err0
errOAAI
errJohn B. Cole
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errSave
Association of fertility traits with markers of oocyte competence in dairy cattle
errJournal of Dairy Science
IF4.4
err2025-09-03
err0
errOAAI
errB. Chasi; J.P. Andrade; P.L.J. Monteiro; B. Castro; E. Moreno; E. Anta; N.N. Ali; J.B. Cole; M.C. Wiltbank; F. Peñagaricano; A.Z. Balboula; M.S. Ortega
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Genomic partition of inbreeding depression in production traits of US Jersey cattle using functional annotations
errJournal of Dairy Science
IF4.4
err2025-08-14
err0
errOAAI
errChang Xu; Christian Maltecca; Francesco Tiezzi; John B. Cole; Sajjad Toghiani; Li Ma; Jicai Jiang
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errSave
Improving dairy calf health through inclusion of diarrhea and respiratory health data into a US national genetic evaluation
errJournal of Dairy Science
IF4.4
err2025-07-22
err0
errOAAI
errMahesh Neupane; Kristen L. Parker Gaddis; Sajjad Toghiani; Asha M. Miles; Jason R. Graham; Javier F. Burchard; João W. Dürr; John B. Cole; Jeffrey R. O'Connell; Curtis P. Van Tassell; Paul M. VanRaden
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Long read and preliminary pangenome analyses reveal breed-specific structural variations and novel sequences in Holstein and Jersey cattle
errJournal of Advanced Research
IF13
err2025-04-19
err0
errOAAI
errYahui Gao; Liu Yang; Kristen Kuhn; Wenli Li; Geoffrey Zanton; Mary Bowman; Pengju Zhao; Yang Zhou; Lingzhao Fang; John B. Cole; Benjamin D. Rosen; Li Ma; Congjun Li; Ransom L. Baldwin; Curtis P. Van Tassell; Zhe Zhang; Timothy P.L. Smith; George E. Liu
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Mammary gland multi-omics data reveals new genetic insights into milk production traits in dairy cattle
errPLOS GENETICS
IF3.7
err2025-04-17
err0
errOAAI
errCai, Wentao; Cole, John B.; Goddard, Michael E.; Li, Junya; Zhang, Shengli
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Invited review: Management of genetic defects in dairy cattle populations
errJOURNAL OF DAIRY SCIENCE
IF4.4
err2025-02-01
err0
errOAAI
errCole, John B.; Baes, Christine F.; Eaglen, Sophie A. E.; Lawlor, Thomas J.; Maltecca, Christian; Ortega, M. Sofia; Vanraden, Paul M.
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Effects of germplasm exchange strategies on genetic gain, homozygosity, and genetic diversity in dairy stud populations: A simulation study
errJOURNAL OF DAIRY SCIENCE
IF4.4
err2024-12-01
err0
errOAAI
errLozada-Soto, Emmanuel A.; Maltecca, Christian; Jiang, Jicai; Cole, John B.; Vanraden, Paul M.; Tiezzi, Francesco
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errSave
Machine learning to identify endometrial biomarkers predictive of pregnancy success following artificial insemination in dairy cows
errBIOLOGY OF REPRODUCTION
IF3
err2024-04-09
err3
PREAI
errHoorn, Quinn A.; Rabaglino, Maria B.; Amaral, Thiago F.; Maia, Tatiane S.; Yu, Fahong; Cole, John B.; Hansen, Peter J.
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Perspective: Can we actually do anything about inbreeding?
errJOURNAL OF DAIRY SCIENCE
IF4.4
err2024-02-01
err7
errOAAI
errCole, John B.
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errSave
Changes in genetic trends in US dairy cattle since the implementation of genomic selection (vol 106, pg 1110, 2023)
errJOURNAL OF DAIRY SCIENCE
IF4.4
err2023-12-01
err0
errOAAI
errGuinan, F. L.; Wiggans, G. R.; Norman, H. D.; Durr, J. W.; Cole, J. B.; Van Tassell, C. P.; Misztal, I.; Lourenco, D.
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Identification of candidate lethal haplotypes and genomic association with post-natal mortality and reproductive traits in Nellore cattle
errSCIENTIFIC REPORTS
IF3.9
err2023-06-27
err2
errOAAI
errSchmidt, Patricia Iana; Mota, Lucio Flavio Macedo; Fonseca, Larissa Fernanda Simielli; dos Santos Silva, Danielly Beraldo; Frezarim, Gabriela Bonfa; Arikawa, Leonardo Machestropa; de Abreu Santos, Daniel Jordan; Magalhes, Ana Fabricia Braga; Cole, John Bruce; Carvalheiro, Roberto; de Oliveira, Henrique Nunes; Null, Daniel Jacob; VanRaden, Paul; Ma, Li; de Albuquerque, Lucia Galvo
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Research Directions

No research directions
Co-authors
Cooperation Journals
M
Michael E. Goddard
H-index: 121 · Papers: 741
A
Adam M. Phillippy
H-index: 94 · Papers: 340
S
Sergey Koren
H-index: 87 · Papers: 316
J
Jeffrey R. O’Connell
H-index: 85 · Papers: 328
G
George Thomas
H-index: 84 · Papers: 600
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