Allan Peter Davis - Publications, H-index & Citations

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Allan Peter Davis

North Carolina State University

35H-index

69Paper Count

5.3WCitation Count

Published Papers 29

Publication Date

Integrating AI-powered text mining from PubTator into the manual curation workflow at the Comparative Toxicogenomics Database

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2025-02-20

OAAI

Wiegers, Thomas C.; Davis, Allan Peter; Wiegers, Jolene; Sciaky, Daniela; Barkalow, Fern; Wyatt, Brent; Strong, Melissa; Mcmorran, Roy; Abrar, Sakib; Mattingly, Carolyn J.

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Comparative toxicogenomics database's 20th anniversary: update 2025

NUCLEIC ACIDS RESEARCH

IF13.1

2024-10-10

OAAI

Davis, Allan Peter; Wiegers, Thomas C.; Sciaky, Daniela; Barkalow, Fern; Strong, Melissa; Wyatt, Brent; Wiegers, Jolene; McMorran, Roy; Abrar, Sakib; Mattingly, Carolyn J.

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Transforming environmental health datasets from the comparative toxicogenomics database into chord diagrams to visualize molecular mechanisms

FRONTIERS IN TOXICOLOGY

IF4.6

2024-07-22

OAAI

Wyatt, Brent; Davis, Allan Peter; Wiegers, Thomas C.; Wiegers, Jolene; Abrar, Sakib; Sciaky, Daniela; Barkalow, Fern; Strong, Melissa; Mattingly, Carolyn J.

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CTD tetramers: a new online tool that computationally links curated chemicals, genes, phenotypes, and diseases to inform molecular mechanisms for environmental health

TOXICOLOGICAL SCIENCES

IF4.1

2023-07-24

OAAI

Davis, Allan Peter; Wiegers, Thomas C.; Wiegers, Jolene; Wyatt, Brent; Johnson, Robin J.; Sciaky, Daniela; Barkalow, Fern; Strong, Melissa; Planchart, Antonio; Mattingly, Carolyn J.

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Comparative Toxicogenomics Database (CTD): update 2023

NUCLEIC ACIDS RESEARCH

IF13.1

2022-09-28

301

OAAI

Davis, Allan Peter; Wiegers, Thomas C.; Johnson, Robin J.; Sciaky, Daniela; Wiegers, Jolene; Mattingly, Carolyn J.

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Comparative Toxicogenomics Database (CTD): update 2021

NUCLEIC ACIDS RESEARCH

IF13.1

2020-10-17

678

OAAI

Davis, Allan Peter; Grondin, Cynthia J.; Johnson, Robin J.; Sciaky, Daniela; Wiegers, Jolene; Wiegers, Thomas C.; Mattingly, Carolyn J.

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Leveraging the Comparative Toxicogenomics Database to Fill in Knowledge Gaps for Environmental Health: A Test Case for Air Pollution-induced Cardiovascular Disease

TOXICOLOGICAL SCIENCES

IF4.1

2020-07-14

OAAI

Davis, Allan Peter; Wiegers, Thomas C.; Grondin, Cynthia J.; Johnson, Robin J.; Sciaky, Daniela; Wiegers, Jolene; Mattingly, Carolyn J.

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The Comparative Toxicogenomics Database: update 2019

NUCLEIC ACIDS RESEARCH

IF13.1

2018-09-24

690

OAAI

Davis, Allan Peter; Grondin, Cynthia J.; Johnson, Robin J.; Sciaky, Daniela; McMorran, Roy; Wiegers, Jolene; Wiegers, Thomas C.; Mattingly, Carolyn J.

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Chemical-Induced Phenotypes at CTD Help Inform the Predisease State and Construct Adverse Outcome Pathways

TOXICOLOGICAL SCIENCES

IF4.1

2018-05-28

OAAI

Davis, Allan Peter; Wiegers, Thomas C.; Wiegers, Jolene; Johnson, Robin J.; Sciaky, Daniela; Grondin, Cynthia J.; Mattingly, Carolyn J.

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Accessing an Expanded Exposure Science Module at the Comparative Toxicogenomics Database

ENVIRONMENTAL HEALTH PERSPECTIVES

IF9.8

2018-01-16

OAAI

Grondin, Cynthia J.; Davis, Allan Peter; Wiegers, Thomas C.; Wiegers, Jolene A.; Mattingly, Carolyn J.

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Advancing Exposure Science through Chemical Data Curation and Integration in the Comparative Toxicogenomics Database

ENVIRONMENTAL HEALTH PERSPECTIVES

IF9.8

2016-10-01

OAAI

Grondin, Cynthia J.; Davis, Allan Peter; Wiegers, Thomas C.; King, Benjamin L.; Wiegers, Jolene A.; Reif, David M.; Hoppin, Jane A.; Mattingly, Carolyn J.

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The Comparative Toxicogenomics Database: update 2017

NUCLEIC ACIDS RESEARCH

IF13.1

2016-09-19

484

OAAI

Davis, Allan Peter; Grondin, Cynthia J.; Johnson, Robin J.; Sciaky, Daniela; King, Benjamin L.; McMorran, Roy; Wiegers, Jolene; Wiegers, Thomas C.; Mattingly, Carolyn J.

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BioCreative V CDR task corpus: a resource for chemical disease relation extraction

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2016-05-09

532

OAAI

Li, Jiao; Sun, Yueping; Johnson, Robin J.; Sciaky, Daniela; Wei, Chih-Hsuan; Leaman, Robert; Davis, Allan Peter; Mattingly, Carolyn J.; Wiegers, Thomas C.; Lu, Zhiyong

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Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2016-03-19

120

OAAI

Wei, Chih-Hsuan; Peng, Yifan; Leaman, Robert; Davis, Allan Peter; Mattingly, Carolyn J.; Li, Jiao; Wiegers, Thomas C.; Lu, Zhiyong

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The Comparative Toxicogenomics Database's 10th year anniversary: update 2015

NUCLEIC ACIDS RESEARCH

IF13.1

2014-10-17

318

OAAI

Davis, Allan Peter; Grondin, Cynthia J.; Lennon-Hopkins, Kelley; Saraceni-Richards, Cynthia; Sciaky, Daniela; King, Benjamin L.; Wiegers, Thomas C.; Mattingly, Carolyn J.

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Web services-based text-mining demonstrates broad impacts for interoperability and process simplification

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2014-06-10

OAAI

Wiegers, Thomas C.; Davis, Allan Peter; Mattingly, Carolyn J.

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A CTD-Pfizer collaboration: manual curation of 88 000 scientific articles text mined for drug-disease and drug-phenotype interactions

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2013-11-28

OAAI

Davis, Allan Peter; Wiegers, Thomas C.; Roberts, Phoebe M.; King, Benjamin L.; Lay, Jean M.; Lennon-Hopkins, Kelley; Sciaky, Daniela; Johnson, Robin; Keating, Heather; Greene, Nigel; Hernandez, Robert; McConnell, Kevin J.; Enayetallah, Ahmed E.; Mattingly, Carolyn J.

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Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Database

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2012-12-06

OAAI

Davis, Allan Peter; Johnson, Robin J.; Lennon-Hopkins, Kelley; Sciaky, Daniela; Rosenstein, Michael C.; Wiegers, Thomas C.; Mattingly, Carolyn J.

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Collaborative biocuration-text-mining development task for document prioritization for curation

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2012-11-22

OAAI

Wiegers, Thomas C.; Davis, Allan Peter; Mattingly, Carolyn J.

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The Comparative Toxicogenomics Database: update 2013

NUCLEIC ACIDS RESEARCH

IF13.1

2012-10-23

344

OAAI

Davis, Allan Peter; Murphy, Cynthia Grondin; Johnson, Robin; Lay, Jean M.; Lennon-Hopkins, Kelley; Saraceni-Richards, Cynthia; Sciaky, Daniela; King, Benjamin L.; Rosenstein, Michael C.; Wiegers, Thomas C.; Mattingly, Carolyn J.

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Research Directions