Shihua Zhang - Publications, H-index & Citations

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张

张世华 (Shihua Zhang)

Chinese Academy of Sciences

45H-index

312Paper Count

9.2KCitation Count

Published Papers 113

Publication Date

CellLoop: Identifying single-cell 3D genome chromatin loops

Nature Communications

IF15.7

2026-04-06

OAAI

Yusen Ye; Yiheng Wang; Shiji Liu; Yuxuan Hu; Liang Yu; Weibing Wang; Shihua Zhang; Hebing Chen; Lin Gao

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Multi-species integration, alignment and annotation of single-cell RNA-seq data with CAMEX

Nature Communications

IF15.7

2026-02-21

OAAI

Zhen-Hao Guo; De-Shuang Huang; Shihua Zhang

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CoRe: Learning compact representation with prior-guided initialization

Pattern Recognition

IF7.6

2026-01-09

PREAI

Yu Song; Junshan Xie; Jing Zhang; Shihua Zhang; Deyu Meng; Xiaohui Yang; Lili Yang

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CellPolaris: Transfer Learning for Gene Regulatory Network Construction to Guide Cell State Transitions

ADVANCED SCIENCE

IF14.1

2026-01-01

OAAI

Feng, Guihai; Qin, Xin; Zhang, Jiahao; Huang, Wuliang; Zhang, Yiyang; Cui, Wentao; Chen, Yao; Li, Shirui; Liu, Wenhao; Tian, Yao; Liu, Yana; Dong, Jingxi; Xu, Ping; Man, Zhenpeng; Liu, Guole; Liang, Zhongming; Jiang, Xinlong; Yang, Xiaodong; Wang, Pengfei; Yang, Ge; Wang, Hongmei; Wang, Xuezhi; Tong, Ming-Han; Zhou, Yuanchun; Zhang, Shihua; Chen, Yiqiang; Wang, Yong; Li, Xin

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Single-cell atlas of hepatitis C virus inoculated tree shrew liver reveals immune activation, metabolic reprogramming, and persistent inflammation

eBioMedicine

IF10.8

2025-12-18

OAAI

Dandan Yu; Wei-Bo Kang; Yu-Hua Ma; Long-Bao Lv; Shihua Zhang; Lei Tang; Sheng Liu; Jin Zhong; Yong-Gang Yao

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Simvastatin induces ferroptosis of colorectal cancer cells and is associated with mevalonate pathway inhibition

Journal of Radiation Research and Applied Sciences

IF2.5

2025-12-01

OAAI

Zhang, Shihua; Li, Kejin; Chen, Yan; Liu, Yusong; Wang, Lin; Xu, Limao

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Research advancements regarding the relationship between FBXO2 and malignant tumors (Review)

MOLECULAR MEDICINE REPORTS

IF3.5

2025-12-01

PREAI

Zhang, Jieya; Yang, Jize; Zhang, Xiaomin; Yuan, Yiran; Sun, Shuai; Zhang, Shihua; He, Jiefeng

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RESEARCH ON CHATTER DETECTION FOR THIN-WALLED WORKPIECE MACHINING BASED ON META-REINFORCEMENT AND HYBRID DEEP CONVOLUTIONAL NEURAL NETWORK

MM SCIENCE JOURNAL

IF0.5

2025-12-01

PREAI

Lu, Yongliang; Zhao, Jun; Tang, Xujie; Zhang, Shihua

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Highly accurate reference and method selection for universal cross-data set cell type annotation with CAMUS

GENOME RESEARCH

IF5.5

2025-11-01

PREAI

Shen, Qunlun; Zhang, Shuqin; Zhang, Shihua

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Progressive Feedforward Collapse of ResNet Training

IEEE Transactions on Neural Networks and Learning Systems

IF8.9

2025-10-28

PREAI

Sicong Wang; Kuo Gai; Shihua Zhang

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A bi-level dispatching model for load-balancing of distributed-flexible biogas plants in multi-energy complementary microgrid: A hybrid data-driven and mechanism-based approach

Fuel

IF7.5

2025-10-10

PREAI

Yiyun Liu; Rongqi Wu; Jianjun Li; Yang Sun; Yuanjie Zhang; Shihua Zhang; Shisheng Wang; Guanghong Sheng

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High-precision cell-type mapping and annotation of single-cell spatial transcriptomics with STAMapper

Genome Biology

IF9.4

2025-10-09

OAAI

Qunlun Shen; Kangning Dong; Shuqin Zhang; Shihua Zhang

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Advancing Peak Particle Velocity Prediction in Rock Blasting: A Z-Based Rock Engineering System

Rock Mechanics and Rock Engineering

IF6.6

2025-09-01

PREAI

Qiang Wang; Jun Wang; Pengfei Yue; Shihua Zhang; Yijun Lu; Xinzhe Lv; Yongsen Zhou; Nikolai Ivanovich Vatin; Jiandong Huang

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Deciphering chromatin domain, domain community and chromunity for 3D genome maps with Mactop

Communications Biology

IF5.1

2025-08-27

OAAI

Ran Duan; Dachang Dang; Shichen Fan; Shaowen Yao; Shihua Zhang

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Single-cell and spatial transcriptomics reveal mechanisms of radioresistance and immune escape in recurrent nasopharyngeal carcinoma

Nature Genetics

IF0

2025-07-21

PREAI

Rui You; Qunlun Shen; Chao Lin; Kangning Dong; Xiao Liu; Hanshi Xu; Wanming Hu; Yulong Xie; Ruoqi Xie; Xiaoyi Song; Chunliu Huang; Jinhui Wu; Tao Yu; Huifeng Li; Zining Wang; Keming Chen; Xiong Zou; Peiyu Huang; Yijun Hua; Youping Liu; Tianliang Xia; Shihua Zhang; Mingyuan Chen

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A new three-edge bone drill designed to reduce mechanical and thermal damage

International Journal of Thermal Sciences

IF5

2025-07-03

PREAI

Shaokang Song; Jun Zhao; Qian Li; Anhai Li; Xianshun Sun; Shihua Zhang; Junfu Liu

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Flyrock distance prediction using a hybrid LightGBM ensemble learning and two nature-based metaheuristic algorithms

Journal of Rock Mechanics and Geotechnical Engineering

IF10.2

2025-05-21

OAAI

Qiang Wang; Jianwei Xiang; Pengfei Yue; Shihua Zhang; Yijun Lu; Runhua Zhang; Jiandong Huang

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Mechanical damage induction mechanisms and process optimization of drilling considering cortical bone material heterogeneity

MATERIALS TODAY COMMUNICATIONS

IF4.5

2025-02-01

PREAI

Song, Shaokang; Zhao, Jun; Li, Anhai; Zhang, Shihua; Sun, Xianshun

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Uncovering topologically associating domains from three-dimensional genome maps with TADGATE

NUCLEIC ACIDS RESEARCH

IF13.1

2024-12-27

OAAI

Dang, Dachang; Zhang, Shao-Wu; Dong, Kangning; Duan, Ran; Zhang, Shihua

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Single-nucleus multi-omics analyses reveal cellular and molecular innovations in the anterior cingulate cortex during primate evolution

CELL GENOMICS

IF9

2024-12-01

PREAI

Yuan, Jiamiao; Dong, Kangning; Wu, Haixu; Zeng, Xuerui; Liu, Xingyan; Liu, Yan; Dai, Jiapei; Yin, Jichao; Chen, Yongjie; Guo, Yongbo; Luo, Wenhao; Liu, Na; Sun, Yan; Zhang, Shihua; Su, Bing

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Research Directions