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Gregory J. Fonseca

khalifa university of science & technology

21H-index
79Paper Count
2.6KCitation Count
Published Papers 32
Publication Date
Dissecting and steering cell dynamics using spatially-informed RNA velocity with veloAgent
err2026-05-06
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errOAAI
errVishvak Raghavan; Brent Yoon; Gregory J Fonseca; Yue Li; Jun Ding
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Refining sequence-to-expression modelling with chromatin accessibility
err2026-04-26
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errOAAI
errOrsolya Lapohos; Gregory J Fonseca; Amin Emad; null
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Type I interferon-dependent and -independent signaling underlie autoantibody production in a murine lupus model
err2026-01-12
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errOAAI
errJerrold S. Levine; Céleste Pilon; Rebecca Subang; David Salem; Elena Lonina; Salman Qureshi; Gregory J. Fonseca; Philippe Gros; Joyce Rauch
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AmalgaMo: flexible DNA motif merging
err2026-01-01
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PREAI
errLapohos, Orsolya; Fonseca, Gregory J.
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DENetwork unveils non-differentially expressed genes with functional relevance across conditions through information flow perturbation
err2025-12-11
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errZhao, Bowen; Su, Ting-Yi; Wang, Jingtao; Islam, Quazi S.; Song, Kailu; Huang, Steven K.; Allez, Matthieu; Fonseca, Gregory J.; Baglole, Carolyn J.; Ding, Jun
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SIDISH integrates single-cell and bulk transcriptomics to identify high-risk cells and guide precision therapeutics through in silico perturbation
err2025-12-10
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errOAAI
errYasmin Jolasun; Kailu Song; Yumin Zheng; Jingtao Wang; Gregory J. Fonseca; David H. Eidelman; Jun Ding
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scGALA advances graph link prediction-based cell alignment for comprehensive data integration and harmonization
err2025-11-26
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errOAAI
errGuo Jiang; Kailu Song; Gregory J. Fonseca; Darcy E. Wagner; Iain C. Clark; Hui Wang; Jun Ding
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Biological responses during high-dose protein nutrition in the critically ill: a randomized controlled trial
err2025-06-26
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errArnold S Kristof; Mengyin Hong; Nadia Boufaied; Nihad Tousson-Abouelazm; Surya Dandamudi; Kwang-bo Joung; Roupen Hatzakorzian; Michelle Port; Giuseppina Campisi; Ciriaco A. Piccirillo; Gregory J Fonseca; Jun Ding; Daren K Heyland; David P Labbé; Linda Wykes; Thomas Schricker
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In vitro evolution and whole genome analysis to study chemotherapy drug resistance in haploid human cells
err2024-06-18
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errJado, Juan Carlos; Dow, Michelle; Carolino, Krypton; Klie, Adam; Fonseca, Gregory J.; Ideker, Trey; Carter, Hannah; Winzeler, Elizabeth A.
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Receptor-mediated effects of Δ9-tetrahydrocannabinol and cannabidiol on the inflammatory response of alveolar macrophages
err2023-01-18
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errOAAI
errPreteroti, Matthew W.; Traboulsi, Hussein; Greiss, Patrick; Lapohos, Orsolya; Fonseca, Gregory J.; Eidelman, David H.; Baglole, Carolyn J.
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DOT1L regulates chamber-specific transcriptional networks during cardiogenesis and mediates postnatal cell cycle withdrawal
err2022-12-02
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errCattaneo, Paola; Hayes, Michael G. B.; Baumgarten, Nina; Hecker, Dennis; Peruzzo, Sofia; Aslan, Galip S.; Kunderfranco, Paolo; Larcher, Veronica; Zhang, Lunfeng; Contu, Riccardo; Fonseca, Gregory; Spinozzi, Simone; Chen, Ju; Condorelli, Gianluigi; Dimmeler, Stefanie; Schulz, Marcel H.; Heinz, Sven; Guimaraes-Camboa, Nuno; Evans, Sylvia M.
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Helminth-induced reprogramming of the stem cell compartment inhibits type 2 immunity
err2022-08-08
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errOAAI
errKaro-Atar, Danielle; Ouladan, Shaida; Javkar, Tanvi; Joumier, Loick; Matheson, Macy K.; Merritt, Sydney; Westfall, Susan; Rochette, Annie; Gentile, Maria E.; Fontes, Ghislaine; Fonseca, Gregory J.; Parisien, Marc; Diatchenko, Luda; von Moltke, Jakob; Malleshaiah, Mohan; Gregorieff, Alex; King, Irah L.
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TLR4 is a regulator of trained immunity in a murine model of Duchenne muscular dystrophy
err2022-02-15
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errBhattarai, Salyan; Li, Qian; Ding, Jun; Liang, Feng; Gusev, Ekaterina; Lapohos, Orsolya; Fonseca, Gregory J.; Kaufmann, Eva; Divangahi, Maziar; Petrof, Basil J.
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Angiotensin-converting enzyme 2 expression in COPD and IPF fibroblasts: the forgotten cell in COVID-19
err2021-01-01
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errOAAI
errAloufi, Noof; Traboulsi, Hussein; Ding, Jun; Fonseca, Gregory J.; Nair, Parameswaran; Huang, Steven K.; Hussain, Sabah N. A.; Eidelman, David H.; Baglole, Carolyn J.
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Infiltrating Hematogenous Macrophages Aggregate Around β-Amyloid Plaques in an Age- and Sex-Dependent Manner in a Mouse Model of Alzheimer Disease
err2020-10-04
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errOAAI
errKozyrev, Natalie; Albers, Shawn; Yang, Jennifer; Prado, Vania F.; Prado, Marco A. M.; Fonseca, Gregory J.; Rylett, R. Jane; Dekaban, Gregory A.
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Differential Effects of Human Adenovirus E1A Protein Isoforms on Aerobic Glycolysis in A549 Human Lung Epithelial Cells
err2020-06-03
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errPrusinkiewicz, Martin A.; Tu, Jessie; Dodge, Mackenzie J.; MacNeil, Katelyn M.; Radko-Juettner, Sandi; Fonseca, Gregory J.; Pelka, Peter; Mymryk, Joe S.
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Transcriptomic and epigenetic mechanisms underlying myeloid diversity in the lung
err2020-01-20
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errSajti, Eniko; Link, Verena M.; Ouyang, Zhengyu; Spann, Nathanael J.; Westin, Emma; Romanoski, Casey E.; Fonseca, Gregory J.; Prince, Lawrence S.; Glass, Christopher K.
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Transcriptome clarifies mechanisms of lesion genesis versus progression in models of Ccm3 cerebral cavernous malformations
err2019-08-19
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errKoskimaki, Janne; Zhang, Dongdong; Li, Yan; Saadat, Laleh; Moore, Thomas; Lightle, Rhonda; Polster, Sean P.; Carrion-Penagos, Julian; Lyne, Sean B.; Zeineddine, Hussein A.; Shi, Changbin; Shenkar, Robert; Romanos, Sharbel; Avner, Kenneth; Srinath, Abhinav; Shen, Le; Detter, Matthew R.; Snellings, Daniel; Cao, Ying; Lopez-Ramirez, Miguel A.; Fonseca, Gregory; Tang, Alan T.; Faber, Pieter; Andrade, Jorge; Ginsberg, Mark; Kahn, Mark L.; Marchuk, Douglas A.; Girard, Romuald; Awad, Issam A.
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Comprehensive transcriptome analysis of cerebral cavernous malformation across multiple species and genotypes
err2019-02-07
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errKoskimaki, Janne; Girard, Romuald; Li, Yan; Saadat, Laleh; Zeineddine, Hussein A.; Lightle, Rhonda; Moore, Thomas; Lyne, Sean; Avner, Kenneth; Shenkar, Robert; Cao, Ying; Shi, Changbin; Polster, Sean P.; Zhang, Dongdong; Carrion-Penagos, Julian; Romanos, Sharbel; Fonseca, Gregory; Lopez-Ramirez, Miguel A.; Chapman, Eric M.; Popiel, Evelyn; Tang, Alan T.; Akers, Amy; Faber, Pieter; Andrade, Jorge; Ginsberg, Mark; Derry, W. Brent; Kahn, Mark L.; Marchuk, Douglas A.; Awad, Issam A.
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