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Accelerating drug discovery and repurposing by combining transcriptional signature connectivity with docking Thorman, Alexander W.; Reigle, James; Chutipongtanate, Somchai; Yang, Juechen; Shamsaei, Behrouz; Pilarczyk, Marcin; Fazel-Najafabadi, Mehdi; Adamczak, Rafal; Kouril, Michal; Bhatnagar, Surbhi; Hummel, Sarah; Niu, Wen; Morrow, Ardythe L.; Czyzyk-Krzeska, Maria F.; Mccullumsmith, Robert; Seibel, William; Nassar, Nicolas; Zheng, Yi; Hildeman, David A.; Medvedovic, Mario; Herr, Andrew B.; Meller, Jarek Share Save
An immunophenotype-coupled transcriptomic atlas of human hematopoietic progenitors Zhang, Xuan; Song, Baobao; Carlino, Maximillian J.; Li, Guangyuan; Ferchen, Kyle; Chen, Mi; Thompson, Evrett N.; Kain, Bailee N.; Schnell, Dan; Thakkar, Kairavee; Kouril, Michal; Jin, Kang; Hay, Stuart B.; Sen, Sidharth; Bernardicius, David; Ma, Siyuan; Bennett, Sierra N.; Croteau, Josh; Salvatori, Ornella; Lye, Melvin H.; Gillen, Austin E.; Jordan, Craig T.; Singh, Harinder; Krause, Diane S.; Salomonis, Nathan; Grimes, H. Leighton Share Save
LungMAP Portal Ecosystem Systems-level Exploration of the Lung Gaddis, Nathan; Fortriede, Joshua; Guo, Minzhe; Bardes, Eric E.; Kouril, Michal; Tabar, Scott; Burns, Kevin; Ardini-Poleske, Maryanne E.; Loos, Stephanie; Schnell, Daniel; Jin, Kang; Iyer, Balaji; Du, Yina; Huo, Bing-Xing; Bhattacharjee, Anukana; Korte, Jeff; Munshi, Ruchi; Smith, Victoria; Herbst, Andrew; Kitzmiller, Joseph A.; Clair, Geremy C.; Carson, James P.; Adkins, Joshua; Morrisey, Edward E.; Pryhuber, Gloria S.; Misra, Ravi; Whitsett, Jeffrey A.; Sun, Xin; Heathorn, Trevor; Paten, Benedict; Prasath, V. B. Surya; Xu, Yan; Tickle, Tim; Aronow, Bruce J.; Salomonis, Nathan Share Save
Guided construction of single cell reference for human and mouse lung Guo, Minzhe; Morley, Michael P.; Jiang, Cheng; Wu, Yixin; Li, Guangyuan; Du, Yina; Zhao, Shuyang; Wagner, Andrew; Cakar, Adnan Cihan; Kouril, Michal A.; Jin, Kang; Gaddis, Nathan C.; Kitzmiller, Joseph A. M.; Stewart, Kathleen; Basil, Maria C.; Lin, Susan M. A.; Ying, Yun; Babu, Apoorva P.; Wikenheiser-Brokamp, Kathryn A.; Mun, Kyu Shik N.; Naren, Anjaparavanda P. S.; Clair, Geremy S.; Adkins, Joshua N. J.; Pryhuber, Gloria S. L.; Misra, Ravi S.; Aronow, Bruce J.; Tickle, Timothy L. E.; Salomonis, Nathan A.; Sun, Xin; Morrisey, Edward E.; Whitsett, Jeffrey A.; Xu, Yan Share Save
Connecting omics signatures and revealing biological mechanisms with iLINCS Pilarczyk, Marcin; Fazel-Najafabadi, Mehdi; Kouril, Michal; Shamsaei, Behrouz; Vasiliauskas, Juozas; Niu, Wen; Mahi, Naim; Zhang, Lixia; Clark, Nicholas A.; Ren, Yan; White, Shana; Karim, Rashid; Xu, Huan; Biesiada, Jacek; Bennett, Mark F.; Davidson, Sarah E.; Reichard, John F.; Roberts, Kurt; Stathias, Vasileios; Koleti, Amar; Vidovic, Dusica; Clarke, Daniel J. B.; Schurer, Stephan C.; Ma'ayan, Avi; Meller, Jarek; Medvedovic, Mario Share Save
piNET: a versatile web platform for downstream analysis and visualization of proteomics data Shamsaei, Behrouz; Chojnacki, Szymon; Pilarczyk, Marcin; Najafabadi, Mehdi; Niu, Wen; Chen, Chuming; Ross, Karen; Matlock, Andrea; Muhlich, Jeremy; Chutipongtanate, Somchai; Zheng, Jie; Turner, John; Vidovic, Dusica; Jaffe, Jake; MacCoss, Michael; Wu, Cathy; Pillai, Ajay; Ma'ayan, Avi; Schurer, Stephan; Kouril, Michal; Medvedovic, Mario; Meller, Jarek Share Save
The Genomics Research and Innovation Network: creating an interoperable, federated, genomics learning system Mandl, Kenneth D.; Glauser, Tracy; Krantz, Ian D.; Avillach, Paul; Bartels, Anna; Beggs, Alan H.; Biswas, Sawona; Bourgeois, Florence T.; Corsmo, Jeremy; Dauber, Andrew; Devkota, Batsal; Fleisher, Gary R.; Heath, Allison P.; Helbig, Ingo; Hirschhorn, Joel N.; Kilbourn, Judson; Kong, Sek Won; Kornetsky, Susan; Majzoub, Joseph A.; Marsolo, Keith; Martin, Lisa J.; Nix, Jeremy; Schwarzhoff, Amy; Stedman, Jason; Strauss, Arnold; Sund, Kristen L.; Taylor, Deanne M.; White, Peter S.; Marsh, Eric; Grimberg, Adda; Hawkes, Colin; Barkman, Darlene; Borglund, Erin M.; Chakrabarty, Ramkrishna; Chandel, Alka; Degala, Anil Kumar; DeSain, Thomas; Dexheimer, Philip; Divekar, Parth; Ellis, Alyssa; Furgason, Mike; Geehan, Christopher; Guidetti, Andrew Joseph; Gutierrez, Alba; Hallinan, Barbara; Harper, Becca; Jalali, Niloofar; Khanna, Jaspreet; Kirby, Christopher; Korodi, Gabor; Kouril, Michal; Kratchman, Amy; Kumar, Ranjay; Labilloy, Guillaume; Lee, In-Hee; Morgan, Bria; Morgan, James; Muglia, Louis J.; Nikitin, Aleksandr; Pistone, Mike; Poduri, Anna; Rupert, Andrew; Safier, Kristen; Sliz, Piotr; Stevenson, Gelvina; St Gemeiii, Joseph; Thaker, Vidhu; Temporal, Simone; Velayutham, Prakash; Wijesooriya, Julie; Wolf, Bryan; Wooten, Andrew; Yen, Alan; Zhang, Yu Share Save
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The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations Keenan, Alexandra B.; Jenkins, Sherry L.; Jagodnik, Kathleen M.; Koplev, Simon; He, Edward; Torre, Denis; Wang, Zichen; Dohlman, Anders B.; Silverstein, Moshe C.; Lachmann, Alexander; Kuleshov, Maxim V.; Ma'ayan, Avi; Stathias, Vasileios; Terryn, Raymond; Cooper, Daniel; Forlin, Michele; Koleti, Amar; Vidovic, Dusica; Chung, Caty; Schurer, Stephan C.; Vasiliauskas, Jouzas; Pilarczyk, Marcin; Shamsaei, Behrouz; Fazel, Mehdi; Ren, Yan; Niu, Wen; Clark, Nicholas A.; White, Shana; Mahi, Naim; Zhang, Lixia; Kouril, Michal; Reichard, John F.; Sivaganesan, Siva; Medvedovic, Mario; Meller, Jaroslaw; Koch, Rick J.; Birtwistle, Marc R.; Iyengar, Ravi; Sobie, Eric A.; Azeloglu, Evren U.; Kaye, Julia; Osterloh, Jeannette; Haston, Kelly; Kalra, Jaslin; Finkbiener, Steve; Li, Jonathan; Milani, Pamela; Adam, Miriam; Escalante-Chong, Renan; Sachs, Karen; Lenail, Alex; Ramamoorthy, Divya; Fraenkel, Ernest; Daigle, Gavin; Hussain, Uzma; Coye, Alyssa; Rothstein, Jeffrey; Sareen, Dhruv; Ornelas, Loren; Banuelos, Maria; Mandefro, Berhan; Ho, Ritchie; Svendsen, Clive N.; Lim, Ryan G.; Casale, Malcolm S.; Thompson, Terri G.; Wu, Jie; Thompson, Leslie M.; Dardov, Victoria; Venkatraman, Vidya; Matlock, Andrea; Van Eyk, Jennifer E.; Jaffe, Jacob D.; Papanastasiou, Malvina; Subramanian, Aravind; Golub, Todd R.; Erickson, Sean D.; Fallahi-Sichani, Mohammad; Hafner, Marc; Gray, Nathanael S.; Lin, Jia-Ren; Mills, Caitlin E.; Muhlich, Jeremy L.; Niepel, Mario; Shamu, Caroline E.; Williams, Elizabeth H.; Wrobel, David; Sorger, Peter K.; Heiser, Laura M.; Gray, Joe W.; Korkola, James E.; Mills, Gordon B.; LaBarge, Mark; Feiler, Heidi S.; Dane, Mark A.; Bucher, Elmar; Nederlof, Michel; Sudar, Damir; Gross, Sean; Kilburn, David F.; Smith, Rebecca; Devlin, Kaylyn; Margolis, Ron; Derr, Leslie; Lee, Albert; Pillai, Ajay Share Save
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