Michiel J.M. Niesen - Publications, H-index & Citations

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Michiel J.M. Niesen

City of Hope

18H-index

60Paper Count

1.2KCitation Count

Published Papers 24

Publication Date

A deep learning approach predicting the activity of COVID-19 therapeutics and vaccines against emerging variants

NPJ SYSTEMS BIOLOGY AND APPLICATIONS

IF3.5

2024-11-27

OAAI

Matson, Robert P.; Comba, Isin Y.; Silvert, Eli; Niesen, Michiel J. M.; Murugadoss, Karthik; Patwardhan, Dhruti; Suratekar, Rohit; Goel, Elizabeth-Grace; Poelaert, Brittany J.; Wan, Kanny K.; Brimacombe, Kyle R.; Venkatakrishnan, A. J.; Soundararajan, Venky

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Paediatric safety assessment of BNT162b2 vaccination in a multistate hospital-based electronic health record system in the USA: a retrospective analysis

LANCET DIGITAL HEALTH

IF24.1

2023-04-01

OAAI

Matson, Robert P.; Niesen, Michiel J. M.; Levy, Emily R.; Opp, Derek N.; Lenehan, Patrick J.; Donadio, Greg; O'Horo, John C.; Venkatakrishnan, A. J.; Badley, Andrew; Soundararajan, Venky

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On the Origins of Omicron's Unique Spike Gene Insertion

VACCINES

IF3.4

2022-09-09

OAAI

Venkatakrishnan, A. J.; Anand, Praveen; Lenehan, Patrick J.; Suratekar, Rohit; Raghunathan, Bharathwaj; Niesen, Michiel J. M.; Soundararajan, Venky

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Quantifying the immunological distinctiveness of emerging SARS-CoV-2 variants in the context of prior regional herd exposure

PNAS NEXUS

IF3.8

2022-07-04

OAAI

Niesen, Michiel J. M.; Murugadoss, Karthik; Lenehan, Patrick J.; Marchler-Bauer, Aron; Wang, Jiyao; Connor, Ryan; Brister, J. Rodney; Venkatakrishnan, A. J.; Soundararajan, Venky

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Durability analysis of the highly effective BNT162b2 vaccine against COVID-19

PNAS NEXUS

IF3.8

2022-06-08

OAAI

Puranik, Arjun; Lenehan, Patrick J.; O'Horo, John C.; Pawlowski, Colin; Niesen, Michiel J. M.; Virk, Abinash; Swift, Melanie D.; Kremers, Walter; Venkatakrishnan, A. J.; Gordon, Joel E.; Geyer, Holly L.; Speicher, Leigh Lewis; Soundararajan, Venky; Badley, Andrew D.

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Third dose vaccination with mRNA-1273 or BNT162b2 vaccines improves protection against SARS-CoV-2 infection

PNAS NEXUS

IF3.8

2022-04-28

OAAI

Niesen, Michiel J. M.; Matson, Robert; Puranik, Arjun; O'Horo, John C.; Pawlowski, Colin; Vachon, Celine; Challener, Douglas; Virk, Abinash; Swift, Melanie; Speicher, Leigh; Gordon, Joel; Geyer, Holly; Lenehan, Patrick J.; Venkatakrishnan, A. J.; Soundararajan, Venky; Badley, Andrew

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Genetic alteration of human MYH6 is mimicked by SARS-CoV-2 polyprotein: mapping viral variants of cardiac interest

CELL DEATH DISCOVERY

IF7

2022-03-21

OAAI

Anand, Praveen; Lenehan, Patrick J.; Niesen, Michiel; Yoo, Unice; Patwardhan, Dhruti; Montorzi, Marcelo; Venkatakrishnan, A. J.; Soundararajan, Venky

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Continuous genomic diversification of long polynucleotide fragments drives the emergence of new SARS-CoV-2 variants of concern

PNAS NEXUS

IF3.8

2022-03-10

OAAI

Murugadoss, Karthik; Niesen, Michiel J. M.; Raghunathan, Bharathwaj; Lenehan, Patrick J.; Ghosh, Pritha; Feener, Tyler; Anand, Praveen; Simsek, Safak; Suratekar, Rohit; Hughes, Travis K.; Soundararajan, Venky

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High diversity in Delta variant across countries revealed by genome-wide analysis of SARS-CoV-2 beyond the Spike protein

MOLECULAR SYSTEMS BIOLOGY

IF7.7

2022-02-14

OAAI

Suratekar, Rohit; Ghosh, Pritha; Niesen, Michiel J. M.; Donadio, Gregory; Anand, Praveen; Soundararajan, Venky; Venkatakrishnan, A. J.

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Comparative effectiveness of mRNA-1273 and BNT162b2 against symptomatic SARS-CoV-2 infection

MED

IF11.8

2022-01-01

OAAI

Puranik, Arjun; Lenehan, Patrick J.; Silvert, Eli; Niesen, Michiel J. M.; Corchado-Garcia, Juan; O'Horo, John C.; Virk, Abinash; Swift, Melanie D.; Gordon, Joel E.; Speicher, Leigh Lewis; Geyer, Holly L.; Kremers, Walter; Halamka, John; Badley, Andrew D.; Venkatakrishnan, A. J.; Soundararajan, Venky

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FDA-authorized mRNA COVID-19 vaccines are effective per real-world evidence synthesized across a mufti-state health system

MED

IF11.8

2021-08-01

119

OAAI

Pawlowski, Colin; Lenehan, Patrick; Puranik, Arjun; Agarwal, Vineet; Venkatakrishnan, A. J.; Niesen, Michiel J. M.; O'Horo, John C.; Virk, Abinash; Swift, Melanie D.; Badley, Andrew D.; Halamka, John; Soundararajan, Venky

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Force transduction creates long-ranged coupling in ribosomes stalled by arrest peptides

BIOPHYSICAL JOURNAL

IF3.1

2021-06-01

OAAI

Zimmer, Matthew H.; Niesen, Michiel J. M.; Miller, Thomas F.

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Water orientation and dynamics in the closed and open influenza B virus M2 proton channels

COMMUNICATIONS BIOLOGY

IF5.1

2021-03-12

OAAI

Gelenter, Martin D.; Mandala, Venkata S.; Niesen, Michiel J. M.; Sharon, Dina A.; Dregni, Aurelio J.; Willard, Adam P.; Hong, Mei

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Dynamics of Co-translational Membrane Protein Integration and Translocation via the Sec Translocon

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

IF15.6

2020-03-04

OAAI

Niesen, Michiel J. M.; Zimmer, Matthew H.; Miller, Thomas F., III

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Forces on Nascent Polypeptides during Membrane Insertion and Translocation via the Sec Translocon

BIOPHYSICAL JOURNAL

IF3.1

2018-11-01

OAAI

Niesen, Michiel J. M.; Muller-Lucks, Annika; Hedman, Rickard; von Heijne, Gunnar; Miller, Thomas F., III

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Improving membrane protein expression by optimizing integration efficiency

JOURNAL OF BIOLOGICAL CHEMISTRY

IF3.9

2017-11-01

OAAI

Niesen, Michiel J. M.; Marshall, Stephen S.; Miller, Thomas F., III; Clemons, William M., Jr.

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A Link between Integral Membrane Protein Expression and Simulated Integration Efficiency

CELL REPORTS

IF6.9

2016-08-01

OAAI

Marshall, Stephen S.; Niesen, Michiel J. M.; Mueller, Axel; Tiemann, Katrin; Saladi, Shyam M.; Galimidi, Rachel P.; Zhang, Bin; Clemons, William M., Jr.; Miller, Thomas F., III

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Inversion of Signal Sequence Topology during Membrane Integration

BIOPHYSICAL JOURNAL

IF3.1

2016-02-01

OAAI

Wang, Connie; Wang, Shuai; Niesen, Michiel; Shan, Shu-ou; Miller, Thomas F., III

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Coarse-Grained Modeling of Membrane Protein Integration via the Sec Translocon

BIOPHYSICAL JOURNAL

IF3.1

2016-02-01