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Hananeh Aliee

Amirkabir University of Technology

20H-index
55Paper Count
2.5KCitation Count
Published Papers 13
Publication Date
Causal machine learning for single-cell genomics
err2025-03-31
err0
errOAAI
errTejada-Lapuerta, Alejandro; Bertin, Paul; Bauer, Stefan; Aliee, Hananeh; Bengio, Yoshua
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Shared inflammatory glial cell signature after stab wound injury, revealed by spatial, temporal, and cell-type-specific profiling of the murine cerebral cortex
err2024-04-03
err7
errOAAI
errKoupourtidou, Christina; Schwarz, Veronika; Aliee, Hananeh; Frerich, Simon; Fischer-Sternjak, Judith; Bocchi, Riccardo; Simon-Ebert, Tatiana; Bai, Xianshu; Sirko, Swetlana; Kirchhoff, Frank; Dichgans, Martin; Goetz, Magdalena; Theis, Fabian J.; Ninkovic, Jovica
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Origin and function of activated fibroblast states during zebrafish heart regeneration
err2022-07-21
err59
errOAAI
errHu, Bo; Lelek, Sara; Spanjaard, Bastiaan; El-Sammak, Hadil; Simoes, Mariana Guedes; Mintcheva, Janita; Aliee, Hananeh; Schaefer, Ronny; Meyer, Alexander M.; Theis, Fabian; Stainier, Didier Y. R.; Panakova, Daniela; Junker, Jan Philipp
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Integration of single-cell transcriptomes and chromatin landscapes reveals regulatory programs driving pharyngeal organ development
err2022-01-24
err23
errOAAI
errMagaletta, Margaret E.; Lobo, Macrina; Kernfeld, Eric M.; Aliee, Hananeh; Huey, Jack D.; Parsons, Teagan J.; Theis, Fabian J.; Maehr, Rene
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Late Breaking Abstract - Transcriptional response to RSV in asthma primary bronchial epithelial cells: are the basal cells responsible for the reduced NF-kB response?
err2021-11-25
err1
PREAI
errGay, Aurore; Berg, Marijn; Carpaij, Orestes; Brouwer, Uilke; Van Gosliga, Djoke; Aliee, Hananeh; Lambrecht, Bart; Van Den Berge, Maarten; Hendriks, Rudi; Koppelman, Gerard; Bont, Louis; Nawijn, Martijn
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Determinants of expression of SARS-CoV-2 entry-related genes in upper and lower airways
err2021-11-03
err17
errOAAI
errAliee, Hananeh; Massip, Florian; Qi, Cancan; Stella de Biase, Maria; van Nijnatten, Jos; Kersten, Elin T. G.; Kermani, Nazanin Z.; Khuder, Basil; Vonk, Judith M.; Vermeulen, Roel C. H.; Neighbors, Margaret; Tew, Gaik W.; Grimbaldeston, Michele A.; ten Hacken, Nick H. T.; Hu, Sile; Guo, Yike; Zhang, Xiaoyu; Sun, Kai; Hiemstra, Pieter S.; Ponder, Bruce A.; Makela, Mika J.; Malmstrom, Kristiina; Rintoul, Robert C.; Reyfman, Paul A.; Theis, Fabian J.; Brandsma, Corry-Anke; Adcock, Ian M.; Timens, Wim; Xu, Cheng-Jian; van den Berge, Maarten; Schwarz, Roland F.; Koppelman, Gerard H.; Nawijn, M. C.; Faiz, Alen
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Current Smoking Alters Gene Expression and DNA Methylation in the Nasal Epithelium of Patients with Asthma
err2021-10-01
err12
errOAAI
errReddy, Karosham D.; Lan, Andy; Boudewijn, Ilse M.; Rathnayake, Senani N. H.; Koppelman, Gerard H.; Aliee, Hananeh; Theis, Fabian; Oliver, Brian G.; van den Berge, Maarten; Faiz, Alen
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Sfaira accelerates data and model reuse in single cell genomics
err2021-08-25
err15
errOAAI
errFischer, David S.; Dony, Leander; Konig, Martin; Moeed, Abdul; Zappia, Luke; Heumos, Lukas; Tritschler, Sophie; Holmberg, Olle; Aliee, Hananeh; Theis, Fabian J.
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Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics
err2021-03-02
err228
errOAAI
errMuus, Christoph; Luecken, Malte D.; Eraslan, Gokcen; Sikkema, Lisa; Waghray, Avinash; Heimberg, Graham; Kobayashi, Yoshihiko; Vaishnav, Eeshit Dhaval; Subramanian, Ayshwarya; Smillie, Christopher; Jagadeesh, Karthik A.; Duong, Elizabeth Thu; Fiskin, Evgenij; Triglia, Elena Torlai; Ansari, Meshal; Cai, Peiwen; Lin, Brian; Buchanan, Justin; Chen, Sijia; Shu, Jian; Haber, Adam L.; Chung, Hattie; Montoro, Daniel T.; Adams, Taylor; Aliee, Hananeh; Allon, Samuel J.; Andrusivova, Zaneta; Angelidis, Ilias; Ashenberg, Orr; Bassler, Kevin; Becavin, Christophe; Benhar, Inbal; Bergenstrahle, Joseph; Bergenstrahle, Ludvig; Bolt, Liam; Braun, Emelie; Bui, Linh T.; Callori, Steven; Chaffin, Mark; Chichelnitskiy, Evgeny; Chiou, Joshua; Conlon, Thomas M.; Cuoco, Michael S.; Cuomo, Anna S. E.; Deprez, Marie; Duclos, Grant; Fine, Denise; Fischer, David S.; Ghazanfar, Shila; Gillich, Astrid; Giotti, Bruno; Gould, Joshua; Guo, Minzhe; Gutierrez, Austin J.; Habermann, Arun C.; Harvey, Tyler; He, Peng; Hou, Xiaomeng; Hu, Lijuan; Hu, Yan; Jaiswal, Alok; Ji, Lu; Jiang, Peiyong; Kapellos, Theodoros S.; Kuo, Christin S.; Larsson, Ludvig; Leney-Greene, Michael A.; Lim, Kyungtae; Litvinukova, Monika; Ludwig, Leif S.; Lukassen, Soeren; Luo, Wendy; Maatz, Henrike; Madissoon, Elo; Mamanova, Lira; Manakongtreecheep, Kasidet; Leroy, Sylvie; Mayr, Christoph H.; Mbano, Ian M.; McAdams, Alexi M.; Nabhan, Ahmad N.; Nyquist, Sarah K.; Penland, Lolita; Poirion, Olivier B.; Poli, Sergio; Qi, CanCan; Queen, Rachel; Reichart, Daniel; Rosas, Ivan; Schupp, Jonas C.; Shea, Conor, V; Shi, Xingyi; Sinha, Rahul; Sit, Rene, V; Slowikowski, Kamil; Slyper, Michal; Smith, Neal P.; Sountoulidis, Alex; Strunz, Maximilian; Sullivan, Travis B.; Sun, Dawei; Talavera-Lopez, Carlos; Tan, Peng; Tantivit, Jessica; Travaglini, Kyle J.; Tucker, Nathan R.; Vernon, Katherine A.; Wadsworth, Marc H.; Waldman, Julia; Wang, Xiuting; Xu, Ke; Yan, Wenjun; Zhao, William; Ziegler, Carly G. K.
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On the Boolean extension of the Birnbaum importance to non-coherent systems
err2017-04-01
err22
PREAI
errAliee, Hananeh; Borgonovo, Emanuele; Glass, Michael; Teich, Juergen
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A new time-independent reliability importance measure
err2016-10-01
err49
PREAI
errBorgonovo, Emanuele; Aliee, Hananeh; Glass, Michael; Teich, Juergen
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