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Andreas R. Pfenning

school of computer science

28H-index
76Paper Count
1.2WCitation Count
Published Papers 16
Publication Date
Paternal epigenetic inheritance increases susceptibility to methamphetamine taking
err2026-08-12
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errSarah E. Swinford-Jackson; BaDoi N. Phan; Azadeh Jadali; Mateo Sarmiento Bustamante; Sharvari Mankame; Samantha J. Worobey; Tyler J. Sacko; Dominick Gangemi; Yixiao Zhu; Andreas R. Pfenning; Kelvin Y. Kwan; Ronald P. Hart; R. Christopher Pierce
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The cell-type-specific genetic architecture of chronic pain in brain and dorsal root ganglia
err2025-12-15
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errToikumo, Sylvanus; Parisien, Marc; Leone, Michael J.; Srinivasan, Chaitanya; Yu, Huasheng; Arendt-Tranholm, Asta; Enzastiga, Urzula Franco-; Hofstetter, Christoph; Curatolo, Michele; Luo, Wenqin; Pfenning, Andreas R.; Seal, Rebecca P.; Kember, Rachel L.; Price, Theodore J.; Diatchenko, Luda; Waxman, Stephen G.; Kranzler, Henry R.
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Insights into Convergent Evolution From Studying Amino Acid Patterns in Independent Lineages of Birds
err2025-12-01
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errLee, Chul; Cho, Seoae; Kim, Kyu-Won; Yoo, Dongahn; Davenport, Matthew; Han, Jae Yong; Lee, Hong Jo; Gedman, Gregory; Audet, Jean-Nicolas; Hara, Erina; Rivas, Miriam; Whitney, Osceola; Pfenning, Andreas R.; Kim, Heebal; Jarvis, Erich D.
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RERconverge Expansion: Using Relative Evolutionary Rates to Study Complex Categorical Trait Evolution
err2024-10-15
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errRedlich, Ruby; Kowalczyk, Amanda; Tene, Michael; Sestili, Heather H.; Foley, Kathleen; Saputra, Elysia; Clark, Nathan; Chikina, Maria; Meyer, Wynn K.; Pfenning, Andreas R.
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Single nuclei transcriptomics in human and non-human primate striatum in opioid use disorder
err2024-01-31
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errPhan, BaDoi N.; Ray, Madelyn H.; Xue, Xiangning; Fu, Chen; Fenster, Robert J.; Kohut, Stephen J.; Bergman, Jack; Haber, Suzanne N.; Mccullough, Kenneth M.; Fish, Madeline K.; Glausier, Jill R.; Su, Qiao; Tipton, Allison E.; Lewis, David A.; Freyberg, Zachary; Tseng, George C.; Russek, Shelley J.; Alekseyev, Yuriy; Ressler, Kerry J.; Seney, Marianne L.; Pfenning, Andreas R.; Logan, Ryan W.
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Psychiatric risk gene Transcription Factor 4 (TCF4) regulates the density and connectivity of distinct inhibitory interneuron subtypes
err2023-09-28
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errChen, Huei-Ying; Phan, BaDoi N.; Shim, Gina; Hamersky, Gregory R.; Sadowski, Norah; O'Donnell, Thomas S.; Sripathy, Srinidhi Rao; Bohlen, Joseph F.; Pfenning, Andreas R.; Maher, Brady J.
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Neurons burdened by DNA double-strand breaks incite microglia activation through antiviral-like signaling in neurodegeneration
err2022-09-30
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errWelch, Gwyneth M.; Boix, Carles A.; Schmauch, Eloi; Davila-Velderrain, Jose; Victor, Matheus B.; Dileep, Vishnu; Bozzelli, P. Lorenzo; Su, Qiao; Cheng, Jemmie D.; Lee, Audrey; Leary, Noelle S.; Pfenning, Andreas R.; Kellis, Manolis; Tsai, Li-Huei
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Machine learning sequence prioritization for cell type-specific enhancer design
err2022-05-16
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errLawler, Alyssa J.; Ramamurthy, Easwaran; Brown, Ashley R.; Shin, Naomi; Kim, Yeonju; Toong, Noelle; Kaplow, Irene M.; Wirthlin, Morgan; Zhang, Xiaoyu; Phan, BaDoi N.; Fox, Grant A.; Wade, Kirsten; He, Jing; Ozturk, Bilge Esin; Byrne, Leah C.; Stauffer, William R.; Fish, Kenneth N.; Pfenning, Andreas R.
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Inferring mammalian tissue-specific regulatory conservation by predicting tissue-specific differences in open chromatin
err2022-04-11
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errKaplow, Irene M.; Schaffer, Daniel E.; Wirthlin, Morgan E.; Lawler, Alyssa J.; Brown, Ashley R.; Kleyman, Michael; Pfenning, Andreas R.
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Molecular rhythm alterations in prefrontal cortex and nucleus accumbens associated with opioid use disorder
err2022-03-26
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errXue, Xiangning; Zong, Wei; Glausier, Jill R.; Kim, Sam-Moon; Shelton, Micah A.; Phan, BaDoi N.; Srinivasan, Chaitanya; Pfenning, Andreas R.; Tseng, George C.; Lewis, David A.; Seney, Marianne L.; Logan, Ryan W.
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Transcriptional and anatomical diversity of medium spiny neurons in the primate striatum
err2021-12-01
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errHe, Jing; Kleyman, Michael; Chen, Jianjiao; Alikaya, Aydin; Rothenhoefer, Kathryn M.; Ozturk, Bilge Esin; Wirthlin, Morgan; Bostan, Andreea C.; Fish, Kenneth; Byrne, Leah C.; Pfenning, Andreas R.; Stauffer, William R.
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Transcriptional Alterations in Dorsolateral Prefrontal Cortex and Nucleus Accumbens Implicate Neuroinflammation and Synaptic Remodeling in Opioid Use Disorder
err2021-10-01
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errSeney, Marianne L.; Kim, Sam-Moon; Glausier, Jill R.; Hildebrand, Mariah A.; Xue, Xiangning; Zong, Wei; Wang, Jiebiao; Shelton, Micah A.; Phan, BaDoi N.; Srinivasan, Chaitanya; Pfenning, Andreas R.; Tseng, George C.; Lewis, David A.; Freyberg, Zachary; Logan, Ryan W.
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Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates
err2020-08-21
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errDamas, Joana; Hughes, Graham M.; Keough, Kathleen C.; Painter, Corrie A.; Persky, Nicole S.; Corbo, Marco; Hiller, Michael; Koepfli, Klaus-Peter; Pfenning, Andreas R.; Zhao, Huabin; Genereux, Diane P.; Swofford, Ross; Pollard, Katherine S.; Ryder, Oliver A.; Nweeia, Martin T.; Lindblad-Toh, Kerstin; Teeling, Emma C.; Karlsson, Elinor K.; Lewin, Harris A.
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Rate of brain aging and APOE ε4 are synergistic risk factors for Alzheimer's disease
err2019-05-27
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errGlorioso, Christin A.; Pfenning, Andreas R.; Lee, Sam S.; Bennett, David A.; Sibille, Etienne L.; Kellis, Manolis; Guarente, Leonard P.
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High-throughput functional comparison of promoter and enhancer activities
err2016-06-16
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errNguyen, Thomas A.; Jones, Richard D.; Snavely, Andrew R.; Pfenning, Andreas R.; Kirchner, Rory; Hemberg, Martin; Gray, Jesse M.
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Relation of addiction genes to hypothalamic gene changes subserving genesis and gratification of a classic instinct, sodium appetite
err2011-07-11
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errLiedtke, Wolfgang B.; McKinley, Michael J.; Walker, Lesley L.; Zhang, Hao; Pfenning, Andreas R.; Drago, John; Hochendoner, Sarah J.; Hilton, Donald L.; Lawrence, Andrew J.; Denton, Derek A.
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