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Stochastic modeling of single-cell gene expression adaptation reveals non-genomic contribution to evolution of tumor subclones Hirsch, M. G.; Pal, Soumitra; Mehrabadi, Farid Rashidi; Malikic, Salem; Gruen, Charli; Sassano, Antonella; Perez-Guijarro, Eva; Merlino, Glenn; Sahinalp, S. Cenk; Molloy, Erin K.; Day, Chi-Ping; Przytycka, Teresa M. Share Save
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Genome-wide profiling of transcription factor activity in primary liver cancer using single-cell ATAC sequencing Craig, Amanda J.; Silveira, Maruhen A. Datsch; Ma, Lichun; Revsine, Mahler; Wang, Limin; Heinrich, Sophia; Rae, Zachary; Ruchinskas, Allison; Dadkhah, Kimia; Do, Whitney; Behrens, Shay; Mehrabadi, Farid R.; Dominguez, Dana A.; Forgues, Marshonna; Budhu, Anuradha; Chaisaingmongkol, Jittiporn; Hernandez, Jonathan M.; Davis, Jeremy L.; Tran, Bao; Marquardt, Jens U.; Ruchirawat, Mathuros; Kelly, Michael; Greten, Tim F.; Wang, Xin W. Share Save
Single-cell methylation sequencing data reveals succinct metastatic migration histories and tumor progression models Li, Xuan C.; Liu, Yuelin; Mehrabadi, Farid Rashidi; Schaffer, Alejandro A.; Pratt, Drew; Crawford, David R.; Malikic, Salem; Molloy, Erin K.; Gopalan, Vishaka; Mount, Stephen M.; Ruppin, Eytan; Aldape, Kenneth; Sahinalp, S. Cenk Share Save
Fast intratumor heterogeneity inference from single-cell sequencing data Kizilkale, Can; Mehrabadi, Farid Rashidi; Azer, Erfan Sadeqi; Perez-Guijarro, Eva; Marie, Kerrie L.; Lee, Maxwell P.; Day, Chi-Ping; Merlino, Glenn; Ergun, Funda; Sahinalp, S. Cenk; Malikic, Salem; Buluc, Aydin Share Save
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Clonal Evolution and Heterogeneity of Osimertinib Acquired Resistance Mechanisms in EGFR Mutant Lung Cancer Roper, Nitin; Brown, Anna-Leigh; Wei, Jun S.; Pack, Svetlana; Trindade, Christopher; Kim, Chul; Restifo, Olivia; Gao, Shaojian; Sindiri, Sivasish; Mehrabadi, Farid; El Meskini, Rajaa; Ohler, Zoe Weaver; Maity, Tapan K.; Venugopalan, Abhilash; Cultraro, Constance M.; Akoth, Elizabeth; Padiernos, Emerson; Chen, Haobin; Kesarwala, Aparna; Smart, DeeDee K.; Nilubol, Naris; Rajan, Arun; Piotrowska, Zofia; Xi, Liqiang; Raffeld, Mark; Panchenko, Anna R.; Sahinalp, Cenk; Hewitt, Stephen; Hoang, Chuong D.; Khan, Javed; Guha, Udayan Share Save
PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing data Malikic, Salem; Mehrabadi, Farid Rashidi; Ciccolella, Simone; Rahman, Md. Khaledur; Ricketts, Camir; Haghshenas, Ehsan; Seidman, Daniel; Hach, Faraz; Hajirasouliha, Iman; Sahinalp, S. Cenk Share Save
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