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James Malone

Southern Illinois University

46H-index
206Paper Count
1.2WCitation Count
Published Papers 14
Publication Date
A Simple Standard for Sharing Ontological Mappings (SSSOM)
err2022-05-25
err31
errOAAI
errMatentzoglu, Nicolas; Balhoff, James P.; Bello, Susan M.; Bizon, Chris; Brush, Matthew; Callahan, Tiffany J.; Chute, Christopher G.; Duncan, William D.; Evelo, Chris T.; Gabriel, Davera; Graybeal, John; Gray, Alasdair; Gyori, Benjamin M.; Haendel, Melissa; Harmse, Henriette; Harris, Nomi L.; Harrow, Ian; Hegde, Harshad B.; Hoyt, Amelia L.; Hoyt, Charles T.; Jiao, Dazhi; Jimenez-Ruiz, Ernesto; Jupp, Simon; Kim, Hyeongsik; Koehler, Sebastian; Liener, Thomas; Long, Qinqin; Malone, James; McLaughlin, James A.; McMurry, Julie A.; Moxon, Sierra; Munoz-Torres, Monica C.; Osumi-Sutherland, David; Overton, James A.; Peters, Bjoern; Putman, Tim; Queralt-Rosinach, Nuria; Shefchek, Kent; Solbrig, Harold; Thessen, Anne; Tudorache, Tania; Vasilevsky, Nicole; Wagner, Alex H.; Mungall, Christopher J.
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Open Targets: a platform for therapeutic target identification and validation
err2016-11-29
err298
errOAAI
errKoscielny, Gautier; An, Peter; Carvalho-Silva, Denise; Cham, Jennifer A.; Fumis, Luca; Gasparyan, Rippa; Hasan, Samiul; Karamanis, Nikiforos; Maguire, Michael; Papa, Eliseo; Pierleoni, Andrea; Pignatelli, Miguel; Platt, Theo; Rowland, Francis; Wankar, Priyanka; Bento, A. Patricia; Burdett, Tony; Fabregat, Antonio; Forbes, Simon; Gaulton, Anna; Gonzalez, Cristina Yenyxe; Hermjakob, Henning; Hersey, Anne; Jupe, Steven; Kafkas, Senay; Keays, Maria; Leroy, Catherine; Lopez, Francisco-Javier; Magarinos, Maria Paula; Malone, James; McEntyre, Johanna; Fuentes, Alfonso Munoz-Pomer; O'Donovan, Claire; Papatheodorou, Irene; Parkinson, Helen; Palka, Barbara; Paschall, Justin; Petryszak, Robert; Pratanwanich, Naruemon; Sarntivijal, Sirarat; Saunders, Gary; Sidiropoulos, Konstantinos; Smith, Thomas; Sondka, Zbyslaw; Stegle, Oliver; Tang, Amy; Turner, Edward; Vaughan, Brendan; Vrousgou, Olga; Watkins, Xavier; Martin, Maria-Jesus; Sanseau, Philippe; Vamathevan, Jessica; Birney, Ewan; Barrett, Jeffrey; Dunham, Ian
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Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data
err2014-10-27
err442
errOAAI
errKibbe, Warren A.; Arze, Cesar; Felix, Victor; Mitraka, Elvira; Bolton, Evan; Fu, Gang; Mungall, Christopher J.; Binder, Janos X.; Malone, James; Vasant, Drashtti; Parkinson, Helen; Schriml, Lynn M.
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Expression Atlas update-a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments
err2013-12-04
err271
errOAAI
errPetryszak, Robert; Burdett, Tony; Fiorelli, Benedetto; Fonseca, Nuno A.; Gonzalez-Porta, Mar; Hastings, Emma; Huber, Wolfgang; Jupp, Simon; Keays, Maria; Kryvych, Nataliya; McMurry, Julie; Marioni, John C.; Malone, James; Megy, Karine; Rustici, Gabriella; Tang, Amy Y.; Taubert, Jan; Williams, Eleanor; Mannion, Oliver; Parkinson, Helen E.; Brazma, Alvis
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ArrayExpress update-trends in database growth and links to data analysis tools
err2012-11-26
err318
errOAAI
errRustici, Gabriella; Kolesnikov, Nikolay; Brandizi, Marco; Burdett, Tony; Dylag, Miroslaw; Emam, Ibrahim; Farne, Anna; Hastings, Emma; Ison, Jon; Keays, Maria; Kurbatova, Natalja; Malone, James; Mani, Roby; Mupo, Annalisa; Pereira, Rui Pedro; Pilicheva, Ekaterina; Rung, Johan; Sharma, Anjan; Tang, Y. Amy; Ternent, Tobias; Tikhonov, Andrew; Welter, Danielle; Williams, Eleanor; Brazma, Alvis; Parkinson, Helen; Sarkans, Ugis
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Translating standards into practice - One Semantic Web API for Gene Expression
err2012-08-01
err10
errOAAI
errDeus, Helena F.; Prud'hommeaux, Eric; Miller, Michael; Zhao, Jun; Malone, James; Adamusiak, Tomasz; McCusker, Jim; Das, Sudeshna; Serra, Philippe Rocca; Fox, Ronan; Marshall, M. Scott
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Cetuximab in Refractory Skin Cancer Treatment
err2012-01-01
err42
errOAAI
errKalapurakal, Sini J.; Malone, James; Robbins, K. Thomas; Buescher, Lucinda; Godwin, John; Rao, Krishna
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Gene Expression Atlas update-a value-added database of microarray and sequencing-based functional genomics experiments
err2011-11-07
err137
errOAAI
errKapushesky, Misha; Adamusiak, Tomasz; Burdett, Tony; Culhane, Aedin; Farne, Anna; Filippov, Alexey; Holloway, Ele; Klebanov, Andrey; Kryvych, Nataliya; Kurbatova, Natalja; Kurnosov, Pavel; Malone, James; Melnichuk, Olga; Petryszak, Robert; Pultsin, Nikolay; Rustici, Gabriella; Tikhonov, Andrew; Travillian, Ravensara S.; Williams, Eleanor; Zorin, Andrey; Parkinson, Helen; Brazma, Alvis
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ArrayExpress update-an archive of microarray and high-throughput sequencing-based functional genomics experiments
err2010-11-10
err269
errOAAI
errParkinson, Helen; Sarkans, Ugis; Kolesnikov, Nikolay; Abeygunawardena, Niran; Burdett, Tony; Dylag, Miroslaw; Emam, Ibrahim; Farne, Anna; Hastings, Emma; Holloway, Ele; Kurbatova, Natalja; Lukk, Margus; Malone, James; Mani, Roby; Pilicheva, Ekaterina; Rustici, Gabriella; Sharma, Anjan; Williams, Eleanor; Adamusiak, Tomasz; Brandizi, Marco; Sklyar, Nataliya; Brazma, Alvis
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Gene Expression Atlas at the European Bioinformatics Institute
err2009-11-10
err193
errOAAI
errKapushesky, Misha; Emam, Ibrahim; Holloway, Ele; Kurnosov, Pavel; Zorin, Andrey; Malone, James; Rustici, Gabriella; Williams, Eleanor; Parkinson, Helen; Brazma, Alvis
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ArrayExpress update-from an archive of functional genomics experiments to the atlas of gene expression
err2009-01-01
err350
errOAAI
errParkinson, Helen; Kapushesky, Misha; Kolesnikov, Nikolay; Rustici, Gabriella; Shojatalab, Mohammad; Abeygunawardena, Niran; Berube, Hugo; Dylag, Miroslaw; Emam, Ibrahim; Farne, Anna; Holloway, Ele; Lukk, Margus; Malone, James; Mani, Roby; Pilicheva, Ekaterina; Rayner, Tim F.; Rezwan, Faisal; Sharma, Anjan; Williams, Eleanor; Bradley, Xiangqun Zheng; Adamusiak, Tomasz; Brandizi, Marco; Burdett, Tony; Coulson, Richard; Krestyaninova, Maria; Kurnosov, Pavel; Maguire, Eamonn; Neogi, Sudeshna Guha; Rocca-Serra, Philippe; Sansone, Susanna-Assunta; Sklyar, Nataliya; Zhao, Mengyao; Sarkans, Ugis; Brazma, Alvis
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A tyrosine kinase created by fusion of the PDGFRA and FIP1L1 genes as a therapeutic target of imatinib in idiopathic hypereosinophilic syndrome
err2003-03-27
err1.5K
errOAAI
errCools, J; DeAngelo, DJ; Gotlib, J; Stover, EH; Legare, RD; Cortes, J; Kutok, J; Clark, J; Galinsky, I; Griffin, JD; Cross, NCP; Tefferi, A; Malone, J; Alam, R; Schrier, SL; Schmid, J; Rose, M; Vandenberghe, P; Verhoef, G; Boogaerts, M; Wlodarska, I; Kantarjian, H; Marynen, P; Coutre, SE; Stone, R; Gilliland, DG
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