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Alexandre Colavin

invitae corporation

13H-index
46Paper Count
2.0KCitation Count
Published Papers 15
Publication Date
Harnessing genotype and phenotype data for population-scale variant classification using large language models and bayesian inference
err2025-04-23
err0
errOAAI
errToby R. Manders; Christopher A. Tan; Yuya Kobayashi; Alexander Wahl; Carlos Araya; Alexandre Colavin; Flavia M. Facio; Hillery Metz; Jason Reuter; Laure Frésard; Samskruthi R. Padigepati; David A. Stafford; Robert L. Nussbaum; Keith Nykamp
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Continuous, probabilistic variant interpretation with Bayesian graphical models
err2024-03-22
err0
PREAI
errKorn, Wolfgang Michael; Kobayashi, Yuya; Facio, Flavia M.; Nampally, Arun; Nykamp, Keith; Nussbaum, Robert; Colavin, Alexandre; Johnson, Britt; Manders, Toby
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The Impact of Machine Learning Models in Reducing Variants of Uncertain Significance in Individuals From Underrepresented Populations Who Are Undergoing Genetic Testing for Heritable Heart Conditions
err2023-11-07
err0
PREAI
errMorales, Ana; Johnson, Britt; Facio, Flavia; Ting, Yi-Lee; Vatta, Matteo; Fresard, Laure; McKnight, Dianalee; Kobayashi, Yuya; Reuter, Jason; Aradhya, Swaroop; Nykamp, Keith; Colavin, Alexandre
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Systematically testing human HMBS missense variants to reveal mechanism and pathogenic variation
err2023-10-01
err8
errOAAI
errvan Loggerenberg, Warren; Sowlati-Hashjin, Shahin; Weile, Jochen; Hamilton, Rayna; Chawla, Aditya; Sheykhkarimli, Dayag; Gebbia, Marinella; Kishore, Nishka; Fresard, Laure; Mustajoki, Sami; Pischik, Elena; Di Pierro, Elena; Barbaro, Michela; Floderus, Ylva; Schmitt, Caroline; Gouya, Laurent; Colavin, Alexandre; Nussbaum, Robert; Friesema, Edith C. H.; Kauppinen, Raili; To-Figueras, Jordi; Aarsand, Aasne K.; Desnick, Robert J.; Garton, Michael; Roth, Frederick P.
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THE IMPACT OF MACHINE LEARNING MODELS IN REDUCING VARIANTS OF UNCERTAIN SIGNIFICANCE (VUS) FOR INDIVIDUALS FROM UNDERREPRESENTED POPULATIONS WHO ARE UNDERGOING TESTING FOR INHERITED METABOLIC DISORDERS
err2023-03-01
err0
PREAI
errJohnson, Britt; Facio, Flavia; Morales, Ana; Fresard, Laure; McKnight, Dianalee; Kobayashi, Yuya; Reuter, Jason; Aradhya, Swaroop; Nykamp, Keith; Colavin, Alexandre
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Spectrum of splicing variants in disease genes and the ability of RNA analysis to reduce uncertainty in clinical interpretation
err2021-04-01
err50
errOAAI
errTruty, Rebecca; Ouyang, Karen; Rojahn, Susan; Garcia, Sarah; Colavin, Alexandre; Hamlington, Barbara; Freivogel, Mary; Nussbaum, Robert L.; Nykamp, Keith; Aradhya, Swaroop
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RodZ modulates geometric localization of the bacterial actin MreB to regulate cell shape
err2018-03-29
err47
errOAAI
errColavin, Alexandre; Shi, Handuo; Huang, Kerwyn Casey
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Deep Phenotypic Mapping of Bacterial Cytoskeletal Mutants Reveals Physiological Robustness to Cell Size
err2017-11-01
err56
errOAAI
errShi, Handuo; Colavin, Alexandre; Bigos, Marty; Tropini, Carolina; Monds, Russell D.; Huang, Kerwyn Casey
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Coupling between Protein Stability and Catalytic Activity Determines Pathogenicity of G6PD Variants
err2017-03-01
err39
errOAAI
errCunningham, Anna D.; Colavin, Alexandre; Huang, Kerwyn Casey; Mochly-Rosen, Daria
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Coordination of peptidoglycan synthesis and outer membrane constriction during Escherichia coli cell division
err2015-05-07
err158
errOAAI
errGray, Andrew N.; Egan, Alexander J. F.; van't Veer, Inge L.; Verheul, Jolanda; Colavin, Alexandre; Koumoutsi, Alexandra; Biboy, Jacob; Altelaar, A. F. Maarten; Damen, Mirjam J.; Huang, Kerwyn Casey; Simorre, Jean-Pierre; Breukink, Eefjan; den Blaauwen, Tanneke; Typas, Athanasios; Gross, Carol A.; Vollmer, Waldemar
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Systematic Perturbation of Cytoskeletal Function Reveals a Linear Scaling Relationship between Cell Geometry and Fitness
err2014-11-01
err61
errOAAI
errMonds, Russell D.; Lee, Timothy K.; Colavin, Alexandre; Ursell, Tristan; Quan, Selwyn; Cooper, Tim F.; Huang, Kerwyn Casey
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Rod-like bacterial shape is maintained by feedback between cell curvature and cytoskeletal localization
err2014-02-18
err234
errOAAI
errUrsell, Tristan S.; Nguyen, Jeffrey; Monds, Russell D.; Colavin, Alexandre; Billings, Gabriel; Ouzounov, Nikolay; Gitai, Zemer; Shaevitz, Joshua W.; Huang, Kerwyn Casey
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