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Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome Masood, Daniall; Ren, Luyao; Nguyen, Cu; Brundu, Francesco G.; Zheng, Lily; Zhao, Yongmei; Jaeger, Erich; Li, Yong; Cha, Seong Won; Halpern, Aaron; Truong, Sean; Virata, Michael; Yan, Chunhua; Chen, Qingrong; Pang, Andy; Alberto, Reyes; Xiao, Chunlin; Yang, Zhaowei; Chen, Wanqiu; Wang, Charles; Cross Jr, Frank; Catreux, Severine; Shi, Leming; Beaver, Julia A.; Xiao, Wenming; Meerzaman, Daoud M. Share Save
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The Quartet Data Portal: integration of community-wide resources for multiomics quality control Yang, Jingcheng; Liu, Yaqing; Shang, Jun; Chen, Qiaochu; Chen, Qingwang; Ren, Luyao; Zhang, Naixin; Yu, Ying; Li, Zhihui; Song, Yueqiang; Yang, Shengpeng; Scherer, Andreas; Tong, Weida; Hong, Huixiao; Xiao, Wenming; Shi, Leming; Zheng, Yuanting Share Save
Quartet RNA reference materials improve the quality of transcriptomic data through ratio-based profiling (Sept, 10.1038/s41587-023-01867-9, 2023) Yu, Ying; Hou, Wanwan; Liu, Yaqing; Wang, Haiyan; Dong, Lianhua; Mai, Yuanbang; Chen, Qingwang; Li, Zhihui; Sun, Shanyue; Yang, Jingcheng; Cao, Zehui; Zhang, Peipei; Zi, Yi; Liu, Ruimei; Gao, Jian; Zhang, Naixin; Li, Jingjing; Ren, Luyao; Jiang, He; Shang, Jun; Zhu, Sibo; Wang, Xiaolin; Qing, Tao; Bao, Ding; Li, Bingying; Li, Bin; Suo, Chen; Pi, Yan; Wang, Xia; Dai, Fangping; Scherer, Andreas; Mattila, Pirkko; Han, Jinxiong; Zhang, Lijun; Jiang, Hui; Thierry-Mieg, Danielle; Thierry-Mieg, Jean; Xiao, Wenming; Hong, Huixiao; Tong, Weida; Wang, Jing; Li, Jinming; Fang, Xiang; Jin, Li; Xu, Joshua; Qian, Feng; Zhang, Rui; Shi, Leming; Zheng, Yuanting Share Save
Quartet RNA reference materials improve the quality of transcriptomic data through ratio-based profiling Yu, Ying; Hou, Wanwan; Liu, Yaqing; Wang, Haiyan; Dong, Lianhua; Mai, Yuanbang; Chen, Qingwang; Li, Zhihui; Sun, Shanyue; Yang, Jingcheng; Cao, Zehui; Zhang, Peipei; Zi, Yi; Liu, Ruimei; Gao, Jian; Zhang, Naixin; Li, Jingjing; Ren, Luyao; Jiang, He; Shang, Jun; Zhu, Sibo; Wang, Xiaolin; Qing, Tao; Bao, Ding; Li, Bingying; Li, Bin; Suo, Chen; Pi, Yan; Wang, Xia; Dai, Fangping; Scherer, Andreas; Mattila, Pirkko; Han, Jinxiong; Zhang, Lijun; Jiang, Hui; Thierry-Mieg, Danielle; Thierry-Mieg, Jean; Xiao, Wenming; Hong, Huixiao; Tong, Weida; Wang, Jing; Li, Jinming; Fang, Xiang; Jin, Li; Xu, Joshua; Qian, Feng; Zhang, Rui; Shi, Leming; Zheng, Yuanting Share Save
Multi-omics data integration using ratio-based quantitative profiling with Quartet reference materials Zheng, Yuanting; Liu, Yaqing; Yang, Jingcheng; Dong, Lianhua; Zhang, Rui; Tian, Sha; Yu, Ying; Ren, Luyao; Hou, Wanwan; Zhu, Feng; Mai, Yuanbang; Han, Jinxiong; Zhang, Lijun; Jiang, Hui; Lin, Ling; Lou, Jingwei; Li, Ruiqiang; Lin, Jingchao; Liu, Huafen; Kong, Ziqing; Wang, Depeng; Dai, Fangping; Bao, Ding; Cao, Zehui; Chen, Qiaochu; Chen, Qingwang; Chen, Xingdong; Gao, Yuechen; Jiang, He; Li, Bin; Li, Bingying; Li, Jingjing; Liu, Ruimei; Qing, Tao; Shang, Erfei; Shang, Jun; Sun, Shanyue; Wang, Haiyan; Wang, Xiaolin; Zhang, Naixin; Zhang, Peipei; Zhang, Ruolan; Zhu, Sibo; Scherer, Andreas; Wang, Jiucun; Wang, Jing; Huo, Yinbo; Liu, Gang; Cao, Chengming; Shao, Li; Xu, Joshua; Hong, Huixiao; Xiao, Wenming; Liang, Xiaozhen; Lu, Daru; Jin, Li; Tong, Weida; Ding, Chen; Li, Jinming; Fang, Xiang; Shi, Leming Share Save
Trends in the approval of cancer therapies by the FDA in the twenty-first century Scott, Emma C.; Baines, Andrea C.; Gong, Yutao; Moore Jr, Rodney; Pamuk, Gulsum E.; Saber, Haleh; Subedee, Ashim; Thompson, Matthew D.; Xiao, Wenming; Pazdur, Richard; Rao, V. Ashutosh; Schneider, Julie; Beaver, Julia A. Share Save
Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies Talsania, Keyur; Shen, Tsai-wei; Chen, Xiongfong; Jaeger, Erich; Li, Zhipan; Chen, Zhong; Chen, Wanqiu; Tran, Bao; Kusko, Rebecca; Wang, Limin; Pang, Andy Wing Chun; Yang, Zhaowei; Choudhari, Sulbha; Colgan, Michael; Fang, Li Tai; Carroll, Andrew; Shetty, Jyoti; Kriga, Yuliya; German, Oksana; Smirnova, Tatyana; Liu, Tiantain; Li, Jing; Kellman, Ben; Hong, Karl; Hastie, Alex R. R.; Natarajan, Aparna; Moshrefi, Ali; Granat, Anastasiya; Truong, Tiffany; Bombardi, Robin; Mankinen, Veronnica; Meerzaman, Daoud; Mason, Christopher E. E.; Collins, Jack; Stahlberg, Eric; Xiao, Chunlin; Wang, Charles; Xiao, Wenming; Zhao, Yongmei Share Save
Personalized genome assembly for accurate cancer somatic mutation discovery using tumor-normal paired reference samples Xiao, Chunlin; Chen, Zhong; Chen, Wanqiu; Padilla, Cory; Colgan, Michael; Wu, Wenjun; Fang, Li-Tai; Liu, Tiantian; Yang, Yibin; Schneider, Valerie; Wang, Charles; Xiao, Wenming Share Save
Achieving robust somatic mutation detection with deep learning models derived from reference data sets of a cancer sample Sahraeian, Sayed Mohammad Ebrahim; Fang, Li Tai; Karagiannis, Konstantinos; Moos, Malcolm; Smith, Sean; Santana-Quintero, Luis; Xiao, Chunlin; Colgan, Michael; Hong, Huixiao; Mohiyuddin, Marghoob; Xiao, Wenming Share Save
Assessing reproducibility of inherited variants detected with short-read whole genome sequencing Pan, Bohu; Ren, Luyao; Onuchic, Vitor; Guan, Meijian; Kusko, Rebecca; Bruinsma, Steve; Trigg, Len; Scherer, Andreas; Ning, Baitang; Zhang, Chaoyang; Glidewell-Kenney, Christine; Xiao, Chunlin; Donaldson, Eric; Sedlazeck, Fritz J.; Schroth, Gary; Yavas, Gokhan; Grunenwald, Haiying; Chen, Haodong; Meinholz, Heather; Meehan, Joe; Wang, Jing; Yang, Jingcheng; Foox, Jonathan; Shang, Jun; Miclaus, Kelci; Dong, Lianhua; Shi, Leming; Mohiyuddin, Marghoob; Pirooznia, Mehdi; Gong, Ping; Golshani, Rooz; Wolfinger, Russ; Lababidi, Samir; Sahraeian, Sayed Mohammad Ebrahim; Sherry, Steve; Han, Tao; Chen, Tao; Shi, Tieliu; Hou, Wanwan; Ge, Weigong; Zou, Wen; Guo, Wenjing; Bao, Wenjun; Xiao, Wenzhong; Fan, Xiaohui; Gondo, Yoichi; Yu, Ying; Zhao, Yongmei; Su, Zhenqiang; Liu, Zhichao; Tong, Weida; Xiao, Wenming; Zook, Justin M.; Zheng, Yuanting; Hong, Huixiao Share Save
The SEQC2 epigenomics quality control (EpiQC) study (vol 22, 332, 2021) Foox, Jonathan; Nordlund, Jessica; Lalancette, Claudia; Gong, Ting; Lacey, Michelle; Lent, Samantha; Langhorst, Bradley W.; Ponnaluri, V. K. Chaithanya; Williams, Louise; Padmanabhan, Karthik Ramaswamy; Cavalcante, Raymond; Lundmark, Anders; Butler, Daniel; Mozsary, Christopher; Gurvitch, Justin; Greally, John M.; Suzuki, Masako; Menor, Mark; Nasu, Masaki; Alonso, Alicia; Sheridan, Caroline; Scherer, Andreas; Bruinsma, Stephen; Golda, Gosia; Muszynska, Agata; Labaj, Pawel P.; Campbell, Matthew A.; Wos, Frank; Raine, Amanda; Liljedahl, Ulrika; Axelsson, Tomas; Wang, Charles; Chen, Zhong; Yang, Zhaowei; Li, Jing; Yang, Xiaopeng; Wang, Hongwei; Melnick, Ari; Guo, Shang; Blume, Alexander; Franke, Vedran; de Caceres, Inmaculada Ibanez; Rodriguez-Antolin, Carlos; Rosas, Rocio; Davis, Justin Wade; Ishii, Jennifer; Megherbi, Dalila B.; Xiao, Wenming; Liao, Will; Xu, Joshua; Hong, Huixiao; Ning, Baitang; Tong, Weida; Akalin, Altuna; Wang, Yunliang; Deng, Youping; Mason, Christopher E. Share Save
The SEQC2 epigenomics quality control (EpiQC) study Foox, Jonathan; Nordlund, Jessica; Lalancette, Claudia; Gong, Ting; Lacey, Michelle; Lent, Samantha; Langhorst, Bradley W.; Ponnaluri, V. K. Chaithanya; Williams, Louise; Padmanabhan, Karthik Ramaswamy; Cavalcante, Raymond; Lundmark, Anders; Butler, Daniel; Mozsary, Christopher; Gurvitch, Justin; Greally, John M.; Suzuki, Masako; Menor, Mark; Nasu, Masaki; Alonso, Alicia; Sheridan, Caroline; Scherer, Andreas; Bruinsma, Stephen; Golda, Gosia; Muszynska, Agata; Labaj, Pawel P.; Campbell, Matthew A.; Wos, Frank; Raine, Amanda; Liljedahl, Ulrika; Axelsson, Tomas; Wang, Charles; Chen, Zhong; Yang, Zhaowei; Li, Jing; Yang, Xiaopeng; Wang, Hongwei; Melnick, Ari; Guo, Shang; Blume, Alexander; Franke, Vedran; Ibanez de Caceres, Inmaculada; Rodriguez-Antolin, Carlos; Rosas, Rocio; Davis, Justin Wade; Ishii, Jennifer; Megherbi, Dalila B.; Xiao, Wenming; Liao, Will; Xu, Joshua; Hong, Huixiao; Ning, Baitang; Tong, Weida; Akalin, Altuna; Wang, Yunliang; Deng, Youping; Mason, Christopher E. Share Save
Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing Xiao, Wenming; Ren, Luyao; Chen, Zhong; Fang, Li Tai; Zhao, Yongmei; Lack, Justin; Guan, Meijian; Zhu, Bin; Jaeger, Erich; Kerrigan, Liz; Blomquist, Thomas M.; Hung, Tiffany; Sultan, Marc; Idler, Kenneth; Lu, Charles; Scherer, Andreas; Kusko, Rebecca; Moos, Malcolm; Xiao, Chunlin; Sherry, Stephen T.; Abaan, Ogan D.; Chen, Wanqiu; Chen, Xin; Nordlund, Jessica; Liljedahl, Ulrika; Maestro, Roberta; Polano, Maurizio; Drabek, Jiri; Vojta, Petr; Koks, Sulev; Reimann, Ene; Madala, Bindu Swapna; Mercer, Timothy; Miller, Chris; Jacob, Howard; Truong, Tiffany; Moshrefi, Ali; Natarajan, Aparna; Granat, Ana; Schroth, Gary P.; Kalamegham, Rasika; Peters, Eric; Petitjean, Virginie; Walton, Ashley; Shen, Tsai-Wei; Talsania, Keyur; Vera, Cristobal Juan; Langenbach, Kurt; de Mars, Maryellen; Hipp, Jennifer A.; Willey, James C.; Wang, Jing; Shetty, Jyoti; Kriga, Yuliya; Raziuddin, Arati; Tran, Bao; Zheng, Yuanting; Yu, Ying; Cam, Margaret; Jailwala, Parthav; Cu Nguyen; Meerzaman, Daoud; Chen, Qingrong; Yan, Chunhua; Ernest, Ben; Mehra, Urvashi; Jensen, Roderick, V; Jones, Wendell; Li, Jian-Liang; Papas, Brian N.; Pirooznia, Mehdi; Chen, Yun-Ching; Seifuddin, Fayaz; Li, Zhipan; Liu, Xuelu; Resch, Wolfgang; Wang, Jingya; Wu, Leihong; Yavas, Gokhan; Miles, Corey; Ning, Baitang; Tong, Weida; Mason, Christopher E.; Donaldson, Eric; Lababidi, Samir; Staudt, Louis M.; Tezak, Zivana; Hong, Huixiao; Wang, Charles; Shi, Leming Share Save
Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing Fang, Li Tai; Zhu, Bin; Zhao, Yongmei; Chen, Wanqiu; Yang, Zhaowei; Kerrigan, Liz; Langenbach, Kurt; de Mars, Maryellen; Lu, Charles; Idler, Kenneth; Jacob, Howard; Zheng, Yuanting; Ren, Luyao; Yu, Ying; Jaeger, Erich; Schroth, Gary P.; Abaan, Ogan D.; Talsania, Keyur; Lack, Justin; Shen, Tsai-Wei; Chen, Zhong; Stanbouly, Seta; Tran, Bao; Shetty, Jyoti; Kriga, Yuliya; Meerzaman, Daoud; Nguyen, Cu; Petitjean, Virginie; Sultan, Marc; Cam, Margaret; Mehta, Monika; Hung, Tiffany; Peters, Eric; Kalamegham, Rasika; Sahraeian, Sayed Mohammad Ebrahim; Mohiyuddin, Marghoob; Guo, Yunfei; Yao, Lijing; Song, Lei; Lam, Hugo Y. K.; Drabek, Jiri; Vojta, Petr; Maestro, Roberta; Gasparotto, Daniela; Koks, Sulev; Reimann, Ene; Scherer, Andreas; Nordlund, Jessica; Liljedahl, Ulrika; Jensen, Roderick, V; Pirooznia, Mehdi; Li, Zhipan; Xiao, Chunlin; Sherry, Stephen T.; Kusko, Rebecca; Moos, Malcolm; Donaldson, Eric; Tezak, Zivana; Ning, Baitang; Tong, Weida; Li, Jing; Duerken-Hughes, Penelope; Catalanotti, Claudia; Maheshwari, Shamoni; Shuga, Joe; Liang, Winnie S.; Keats, Jonathan; Adkins, Jonathan; Tassone, Erica; Zismann, Victoria; McDaniel, Timothy; Trent, Jeffrey; Foox, Jonathan; Butler, Daniel; Mason, Christopher E.; Hong, Huixiao; Shi, Leming; Wang, Charles; Xiao, Wenming Share Save
A multicenter study benchmarking single-cell RNA sequencing technologies using reference samples Chen, Wanqiu; Zhao, Yongmei; Chen, Xin; Yang, Zhaowei; Xu, Xiaojiang; Bi, Yingtao; Chen, Vicky; Li, Jing; Choi, Hannah; Ernest, Ben; Tran, Bao; Mehta, Monika; Kumar, Parimal; Farmer, Andrew; Mir, Alain; Mehra, Urvashi Ann; Li, Jian-Liang; Moos, Malcolm, Jr.; Xiao, Wenming; Wang, Charles Share Save
A novel model of alternative NF-κB pathway activation in anaplastic large cell lymphoma Wang, Hongbo; Wei, Wei; Zhang, Jing-Ping; Song, Zhihui; Li, Yangyang; Xiao, Wenming; Liu, Yijun; Zeng, Mu-Sheng; Petrus, Michael N.; Thomas, Craig J.; Kadin, Marshall E.; Nakagawa, Masao; Waldmann, Thomas A.; Yang, Yibin Share Save
Essential role of the linear ubiquitin chain assembly complex and TAK1 kinase in A20 mutant Hodgkin lymphoma Song, Zhihui; Wei, Wei; Xiao, Wenming; Al-Saleem, Essel D.; Nejati, Reza; Chen, Liqi; Yin, Jiejing; Fabrizio, Joseph; Petrus, Michael N.; Waldmann, Thomas A.; Yang, Yibin Share Save
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