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M

Mohammad R. K. Mofrad

University of California

59H-index
442Paper Count
1.4WCitation Count
Published Papers 124
Publication Date
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Intrinsically disordered regions facilitate Mlp1–Nab2 recognition in mRNA quality control
errNucleus
IF4.5
err2026-06-03
err0
errOAAI
errMohammad Soheilypour; Mohaddeseh Peyro; Hengameh Shams; Mohammad R. K. Mofrad
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Genome modelling and design across all domains of life with Evo 2
errNature
IF48.5
err2026-03-04
err0
errOAAI
errGaryk Brixi; Matthew G. Durrant; Jerome Ku; Mohsen Naghipourfar; Michael Poli; Gwanggyu Sun; Greg Brockman; Daniel Chang; Alison Fanton; Gabriel A. Gonzalez; Samuel H. King; David B. Li; Aditi T. Merchant; Eric Nguyen; Chiara Ricci-Tam; David W. Romero; Jonathan C. Schmok; Ali Taghibakhshi; Anton Vorontsov; Brandon Yang; Myra Deng; Liv Gorton; Nam Nguyen; Nicholas K. Wang; Michael T. Pearce; Elana Simon; Etowah Adams; Zachary J. Amador; Euan A. Ashley; Stephen A. Baccus; Haoyu Dai; Steven Dillmann; Stefano Ermon; Daniel Guo; Michael H. Herschl; Rajesh Ilango; Ken Janik; Amy X. Lu; Reshma Mehta; Mohammad R. K. Mofrad; Madelena Y. Ng; Jaspreet Pannu; Christopher Ré; John St. John; Jeremy Sullivan; Joseph Tey; Ben Viggiano; Kevin Zhu; Greg Zynda; Daniel Balsam; Patrick Collison; Anthony B. Costa; Tina Hernandez-Boussard; Eric Ho; Ming-Yu Liu; Thomas McGrath; Kimberly Powell; Sudarshan Pinglay; Dave P. Burke; Hani Goodarzi; Patrick D. Hsu; Brian L. Hie
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A smart self-oxygenating system for localized and sustained oxygen delivery in bioengineered tissue constructs
errCommunications Materials
IF9.6
err2026-01-05
err0
errOAAI
errVaishali Krishnadoss; Baishali Kanjilal; Aihik Banerjee; Prince David Okoro; Mohammad Khavani; Proma Basu; Nourouddin Sharifi; Johnson V. John; Manuela Martins-Green; Amos Mugweru; Mohammad R. K. Mofrad; Arameh Masoumi; Iman Noshadi
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errSave
SIMBA-GNN: mechanistic graph learning for microbiome prediction
errnpj Systems Biology and Applications
IF3.5
err2025-12-12
err0
errOAAI
errJavad Aminian-Dehkordi; Mohammad Parsa; Andrew Dickson; Mohammad R. K. Mofrad
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errSave
Systems biology and microbiome innovations for personalized diabetic retinopathy management
errnpj Systems Biology and Applications
IF3.5
err2025-11-21
err0
errOAAI
errJavad Aminian-Dehkordi; Fateme Montazeri; Ali Tamadon; Mohammad R. K. Mofrad
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errSave
Expanding the HP1a-binding consensus and molecular grammar for heterochromatin assembly
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-10-28
err1
errOAAI
errColmenares, Serafin U.; Tsukamoto, Shingo; Hickmann, Collin; Brennan, Lucy D.; Khavani, Mohammad; Mofrad, Mohammad R. K.; Karpen, Gary H.
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Computational Drug Design in the AI Era: A Systematic Review of Molecular Representations, Generative Architectures, and Performance Assessment
errPharmacological Reviews
IF17.3
err2025-10-10
err0
PREAI
errKarim Abbasi; Parvin Razzaghi; Ali Gharizadeh; Amin Ghareyazi; Abbas Dehnad; Hamid R. Rabiee; Mohammad R.K. Mofrad
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errSave
Correction: Identification of acrylamide-based covalent inhibitors of SARS-CoV-2 (SCoV-2) Nsp15 using high-throughput screening and machine learning
errRSC Adv.
IF4.6
err2025-08-22
err0
errOAAI
errTeena Bajaj; Babak Mosavati; Lydia H. Zhang; Mohammad S. Parsa; Huanchen Wang; Evan M. Kerek; Xueying Liang; Seyed Amir Tabatabaei Dakhili; Eddie Wehri; Silin Guo; Rushil N. Desai; Lauren M. Orr; Mohammad R. K. Mofrad; Julia Schaletzky; John R. Ussher; Xufang Deng; Robin Stanley; Basil P. Hubbard; Daniel K. Nomura; Niren Murthy
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errSave
Demographic drivers of gut microbiome diversity
errAMB Express
IF3.7
err2025-08-08
err0
errOAAI
errHannaneh Kabir; Matilda Holtz; Justine Choueiri; Mohammad Reza Kaazempur Mofrad
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errSave
Bridging scales in chromatin organization: Computational models of loop formation and their implications for genome function
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2025-02-07
err0
PREAI
errTsukamoto, Shingo; Mofrad, Mohammad R. K.
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errSave
Identification of acrylamide-based covalent inhibitors of SARS-CoV-2 (SCoV-2) Nsp15 using high-throughput screening and machine learning
errRSC ADVANCES
IF4.6
err2025-01-01
err0
errOAAI
errBajaj, Teena; Mosavati, Babak; Zhang, Lydia H.; Parsa, Mohammad S.; Wang, Huanchen; Kerek, Evan M.; Liang, Xueying; Tabatabaei Dakhili, Seyed Amir; Wehri, Eddie; Guo, Silin; Desai, Rushil N.; Orr, Lauren M.; Mofrad, Mohammad R. K.; Schaletzky, Julia; Ussher, John R.; Deng, Xufang; Stanley, Robin; Hubbard, Basil P.; Nomura, Daniel K.; Murthy, Niren
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Mechanistic understanding of enhancing bioactivity via bio-ionic liquid functionalization of biomaterials
errAPPLIED MATERIALS TODAY
IF6.9
err2024-12-01
err0
errOAAI
errBanerjee, Aihik; Khavani, Mohammad; Dalsania, Kevin; Okoro, Prince David; Mofrad, Mohammad R. K.; Noshadi, Iman
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errSave
Regulating transport efficiency through the nuclear pore complex: The role of binding affinity with FG-Nups
errMOLECULAR BIOLOGY OF THE CELL
IF2.7
err2024-12-01
err0
PREAI
errMatsuda, Atsushi; Mofrad, Mohammad R. K.
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Bacterial community dynamics as a result of growth-yield trade-off and multispecies metabolic interactions toward understanding the gut biofilm niche
errBMC MICROBIOLOGY
IF4.2
err2024-10-29
err3
errOAAI
errValiei, Amin; Dickson, Andrew M.; Aminian-Dehkordi, Javad; Mofrad, Mohammad R. K.
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errSave
Metabolic interactions shape emergent biofilm structures in a conceptual model of gut mucosal bacterial communities
errNPJ BIOFILMS AND MICROBIOMES
IF9.2
err2024-10-02
err0
errOAAI
errValiei, Amin; Dickson, Andrew; Aminian-Dehkordi, Javad; Mofrad, Mohammad R. K.
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Integrin mechanosensing relies on a pivot-clip mechanism to reinforce cell adhesion
errBIOPHYSICAL JOURNAL
IF3.1
err2024-08-01
err0
errOAAI
errMontes, Andre R.; Barroso, Anahi; Wang, Wei; O'Connell, Grace D.; Tepole, Adrian B.; Mofrad, Mohammad R. K.
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Deep Learning for Perfusion Cerebral Blood Flow (CBF) and Volume (CBV) Predictions and Diagnostics
errANNALS OF BIOMEDICAL ENGINEERING
IF5.4
err2024-02-24
err0
errOAAI
errTalebi, Salmonn; Gai, Siyu; Sossin, Aaron; Zhu, Vivian; Tong, Elizabeth; Mofrad, Mohammad R. K.
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errSave
Exploring the performance and explainability of fine-tuned BERT models for neuroradiology protocol assignment
errBMC MEDICAL INFORMATICS AND DECISION MAKING
IF3.8
err2024-02-07
err6
errOAAI
errTalebi, Salmonn; Tong, Elizabeth; Li, Anna; Yamin, Ghiam; Zaharchuk, Greg; Mofrad, Mohammad R. K.
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Force transmission and SUN-KASH higher-order assembly in the LINC complex models
errBIOPHYSICAL JOURNAL
IF3.1
err2023-12-01
err0
errOAAI
errYerima, Ghafar; Domkam, Nya; Ornowski, Jessica; Jahed, Zeinab; Mofrad, Mohammad R. K.
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Smartphone-assisted lab-in-a-tube device using gold nanocluster-based aptasensor for detection of MUC1-overexpressed tumor cells
errANALYTICA CHIMICA ACTA
IF6
err2023-04-01
err13
PREAI
errSanati, Alireza; Esmaeili, Yasaman; Khavani, Mohammad; Bidram, Elham; Rahimi, Azadeh; Dabiri, Arezou; Rafienia, Mohammad; Jolfaie, Nafise Arbab; Mofrad, Mohammad R. K.; Javanmard, Shaghayegh Haghjooy; Shariati, Laleh; Zarrabi, Ali
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Research Directions

No research directions
Co-authors
Cooperation Journals
P
Peter Parham
H-index: 130 · Papers: 743
F
Farshid Guilak
H-index: 127 · Papers: 666
R
Roger D. Kamm
H-index: 117 · Papers: 768
张扬 cover
张扬 (Yang Zhang)
H-index: 112 · Papers: 1.6K
J
Joseph P. Vacanti
H-index: 108 · Papers: 541
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