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SavePhylogenomics reveals extensive misidentification of fungal strains from the genus Aspergillus
Steenwyk, Jacob L.; Balamurugan, Charu; Raja, Huzefa A.; Goncalves, Carla; Li, Ningxiao; Martin, Frank; Berman, Judith; Oberlies, Nicholas H.; Gibbons, John G.; Goldman, Gustavo H.; Geiser, David M.; Houbraken, Jos; Hibbett, David S.; Rokas, Antonis Share Save Share Save A global phylogenomic analysis of the shiitake genus LentinulaSierra-Patev, Sean; Min, Byoungnam; Naranjo-Ortiz, Miguel; Looney, Brian; Konkel, Zachary; Slot, Jason C.; Sakamoto, Yuichi; Steenwyk, Jacob L.; Rokas, Antonis; Carro, Juan; Camarero, Susana; Ferreira, Patricia; Molpeceres, Gonzalo; Ruiz-Duenas, Francisco J.; Serrano, Ana; Henrissat, Bernard; Drula, Elodie; Hughes, Karen W.; Mata, Juan L.; Ishikawa, Noemia Kazue; Vargas-Isla, Ruby; Ushijima, Shuji; Smith, Chris A.; Donoghue, John; Ahrendt, Steven; Andreopoulos, William; He, Guifen; LaButti, Kurt; Lipzen, Anna; Ng, Vivian; Riley, Robert; Sandor, Laura; Barry, Kerrie; Martinez, Angel T.; Xiao, Yang; Gibbons, John G.; Terashima, Kazuhisa; Grigoriev, Igor V.; Hibbett, David Share Save Global phylogeny of the Shiitake mushroom and related Lentinula species uncovers novel diversity and suggests an origin in the NeotropicsMenolli Jr, Nelson; Sanchez-Ramirez, Santiago; Sanchez-Garcia, Marisol; Wang, Chaoqun; Patev, Sean; Ishikawa, Noemia Kazue; Mata, Juan L.; Lenz, Alexandre Rafael; Vargas-Isla, Ruby; Liderman, Lauren; Lamb, Meriel; Nuhn, Mitchell; Hughes, Karen W.; Xiao, Yang; Hibbett, David S. Share Save Population genomics provides insights into the genetic basis of adaptive evolution in the mushroom-forming fungus Lentinula edodesZhang, Jingcheng; Shen, Nan; Li, Chuang; Xiang, Xingjie; Liu, Gaolei; Gui, Ying; Patev, Sean; Hibbett, David S.; Barry, Kerrie; Andreopoulos, William; Lipzen, Anna; Riley, Robert; He, Guifen; Yan, Mi; Grigoriev, Igor V.; Kwan, Hoi Shan; Cheung, Man Kit; Bian, Yinbing; Xiao, Yang Share Save Share Save RETRACTION: Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi (Retraction of Vol 13, Pg 1391, 2019)Wu, Baojun; Gaskell, Jill; Zhang, Jiwei; Toapanta, Christina; Ahrendt, Steven; Grigoriev, Igor V.; Blanchette, Robert A.; Schilling, Jonathan S.; Master, Emma; Cullen, Daniel; Hibbett, David S. Share Save RNA-editing in Basidiomycota, revisitedMin, Byoungnam; Wu, Baojun; Gaskell, Jill; Zhang, Jiwei; Toapanta, Christina; Ahrendt, Steven; Blanchette, Robert A.; Master, Emma; Cullen, Daniel; Hibbett, David S.; Grigoriev, Igor V. Share Save RETRACTION: Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola (Retraction of Vol 84, art no E00991-18, 2018)Wu, Baojun; Gaskell, Jill; Held, Benjamin W.; Toapanta, Cristina; Thu Vuong; Ahrendt, Steven; Lipzen, Anna; Zhang, Jiwei; Schilling, Jonathan S.; Master, Emma; Grigoriev, Igor V.; Blanchette, Robert A.; Cullen, Dan; Hibbett, David S. Share Save RETRACTION: Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola (Retraction of Vol 87, art no E0033021, 2021)Wu, Baojun; Gaskell, Jill; Held, Benjamin W.; Toapanta, Cristina; Vuong, Thu V.; Ahrendt, Steven; Lipzen, Anna; Zhang, Jiwei; Schilling, Jonathan S.; Master, Emma; Grigoriev, Igor V.; Blanchette, Robert A.; Cullen, Dan; Hibbett, David S. Share Save Share Save Genomic Analysis Enlightens Agaricales Lifestyle Evolution and Increasing Peroxidase DiversityRuiz-Duenas, Francisco J.; Barrasa, Jose M.; Sanchez-Garcia, Marisol; Camarero, Susana; Miyauchi, Shingo; Serrano, Ana; Linde, Dolores; Babiker, Rashid; Drula, Elodie; Ayuso-Fernandez, Ivan; Pacheco, Remedios; Padilla, Guillermo; Ferreira, Patricia; Barriuso, Jorge; Kellner, Harald; Castanera, Raul; Alfaro, Manuel; Ramirez, Lucia; Pisabarro, Antonio G.; Riley, Robert; Kuo, Alan; Andreopoulos, William; LaButti, Kurt; Pangilinan, Jasmyn; Tritt, Andrew; Lipzen, Anna; He, Guifen; Yan, Mi; Ng, Vivian; Grigoriev, Igor, V; Cullen, Daniel; Martin, Francis; Rosso, Marie-Noelle; Henrissat, Bernard; Hibbett, David; Martinez, Angel T. Share Save Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traitsMiyauchi, Shingo; Kiss, Eniko; Kuo, Alan; Drula, Elodie; Kohler, Annegret; Sanchez-Garcia, Marisol; Morin, Emmanuelle; Andreopoulos, Bill; Barry, Kerrie W.; Bonito, Gregory; Buee, Marc; Carver, Akiko; Chen, Cindy; Cichocki, Nicolas; Clum, Alicia; Culley, David; Crous, Pedro W.; Fauchery, Laure; Girlanda, Mariangela; Hayes, Richard D.; Keri, Zsofia; LaButti, Kurt; Lipzen, Anna; Lombard, Vincent; Magnuson, Jon; Maillard, Francois; Murat, Claude; Nolan, Matt; Ohm, Robin A.; Pangilinan, Jasmyn; Pereira, Maira de Freitas; Perotto, Silvia; Peter, Martina; Pfister, Stephanie; Riley, Robert; Sitrit, Yaron; Stielow, J. Benjamin; Szollosi, Gergely; Zifcakova, Lucia; Stursova, Martina; Spatafora, Joseph W.; Tedersoo, Leho; Vaario, Lu-Min; Yamada, Akiyoshi; Yan, Mi; Wang, Pengfei; Xu, Jianping; Bruns, Tom; Baldrian, Petr; Vilgalys, Rytas; Dunand, Christophe; Henrissat, Bernard; Grigoriev, Igor V.; Hibbett, David; Nagy, Laszlo G.; Martin, Francis M. Share Save Fungal functional ecology: bringing a trait-based approach to plant-associated fungiZanne, Amy E.; Abarenkov, Kessy; Afkhami, Michelle E.; Aguilar-Trigueros, Carlos A.; Bates, Scott; Bhatnagar, Jennifer M.; Busby, Posy E.; Christian, Natalie; Cornwell, William K.; Crowther, Thomas W.; Flores-Moreno, Habacuc; Floudas, Dimitrios; Gazis, Romina; Hibbett, David; Kennedy, Peter; Lindner, Daniel L.; Maynard, Daniel S.; Milo, Amy M.; Nilsson, R. Henrik; Powell, Jeff; Schildhauer, Mark; Schilling, Jonathan; Treseder, Kathleen K. Share Save Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungiKrizsan, Krisztina; Almasi, Eva; Merenyi, Zsolt; Sahu, Neha; Viragh, Mate; Koszo, Tamas; Mondo, Stephen; Kiss, Brigitta; Balint, Balazs; Kuees, Ursula; Barry, Kerrie; Cseklye, Judit; Hegedus, Botond; Henrissat, Bernard; Johnson, Jenifer; Lipzen, Anna; Ohm, Robin A.; Nagy, Istvan; Pangilinan, Jasmyn; Yan, Juying; Xiong, Yi; Grigoriev, Igor V.; Hibbett, David S.; Nagy, Laszlo G. Share Save Megaphylogeny resolves global patterns of mushroom evolutionVarga, Torda; Krizsan, Krisztina; Foldi, Csenge; Dima, Balint; Sanchez-Garcia, Marisol; Sanchez-Ramirez, Santiago; Szollosi, Gergely J.; Szarkandi, Janos G.; Papp, Viktor; Albert, Laszlo; Andreopoulos, William; Angelini, Claudio; Antonin, Vladimir; Barry, Kerrie W.; Bougher, Neale L.; Buchanan, Peter; Buyck, Bart; Bense, Viktoria; Catcheside, Pam; Chovatia, Mansi; Cooper, Jerry; Daemon, Wolfgang; Desjardin, Dennis; Finy, Peter; Geml, Jozsef; Haridas, Sajeet; Hughes, Karen; Justo, Alfredo; Karasinski, Dariusz; Kautmanova, Ivona; Kiss, Brigitta; Kocsube, Sandor; Kotiranta, Heikki; LaButti, Kurt M.; Lechner, Bernardo E.; Liimatainen, Kare; Lipzen, Anna; Lukacs, Zoltan; Mihaltcheva, Sirma; Morgado, Louis N.; Niskanen, Tuula; Noordeloos, Machiel E.; Ohm, Robin A.; Ortiz-Santana, Beatriz; Ovrebo, Clark; Racz, Nikolett; Riley, Robert; Savchenko, Anton; Shiryaev, Anton; Soop, Karl; Spirin, Viacheslav; Szebenyi, Csilla; Tomsovsky, Michal; Tulloss, Rodham E.; Uehling, Jessie; Grigoriev, Igor, V; Vagvolgyi, Csaba; Papp, Tamas; Martin, Francis M.; Miettinen, Otto; Hibbett, David S.; Nagy, Laszlo G. Share Save RETRACTED: Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi (Retracted article. See vol. 16, pg. 322, 2022)Wu, Baojun; Gaskell, Jill; Zhang, Jiwei; Toapanta, Christina; Ahrendt, Steven; Grigoriev, Igor V.; Blanchette, Robert A.; Schilling, Jonathan S.; Master, Emma; Cullen, Daniel; Hibbett, David S. Share Save Share Save Contemporaneous radiations of fungi and plants linked to symbiosisLutzoni, Francois; Nowak, Michael D.; Alfaro, Michael E.; Reeb, Valerie; Miadlikowska, Jolanta; Krug, Michael; Arnold, A. Elizabeth; Lewis, Louise A.; Swofford, David L.; Hibbett, David; Hilu, Khidir; James, Timothy Y.; Quandt, Dietmar; Magallon, Susana Share Save 
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