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A Collection of Patient-Derived Intestinal Organoid Lines Reveals Epithelial Phenotypes Associated with Genetic Drivers of Pediatric Inflammatory Bowel Disease Jeshvaghani, Zahra Shojaei; Argmann, Carmen; de Vries, Maaike H.; van Es, Johan H.; Collen, Lauren, V; Kotlarz, Daniel; Sveen, Mia; Comella, Phillip H.; Snapper, Scott B.; Klein, Christoph; Schadt, Eric E.; Clevers, Hans; Mokry, Michal; Kuijk, Ewart; Nieuwenhuis, Edward Share Save
Disease duration impacts intestinal gene expression profiles in Crohn's disease but not in ulcerative colitis Ibing, Susanne; Tastad, Christopher; Renard, Bernhard Y.; Cohen, Louis J.; Argmann, Carmen; Helmus, Drew; Schadt, Eric E.; Merad, Miriam; Kukreja, Anjli; Visvanathan, Sudha; Sands, Bruce E.; Dubinsky, Marla; Suarez-Farinas, Mayte; Colombel, Jean-Frederic; Bottinger, Erwin P.; Cho, Judy H.; Petralia, Francesca; Ungaro, Ryan C. Share Save
DOP072 The IL1-dependent transcription factor MEOX1 as a driver of differentiation programs in ACKR1+endothelial cells of inflammatory bowel disease granulation tissue Mitsialis, V; Losa, M.; Lance, C.; Tang, Y.; Barends, J.; Anziano, E.; Field, M.; Eran, A.; Horwitz, B.; Muise, A.; Klein, C.; Kotlarz, D.; Argmann, C.; Schadt, E.; Snapper, S. Share Save
CriteriaMapper: establishing the automatic identification of clinical trial cohorts from electronic health records by matching normalized eligibility criteria and patient clinical characteristics Lee, K.; Mai, Y.; Liu, Z.; Raja, K.; Jun, T.; Ma, M.; Wang, T.; Ai, L.; Calay, E.; Oh, W.; Schadt, E.; Wang, X. Share Save
Divergent landscapes of A-to-I editing in postmortem and living human brain (vol 15, 5366, 2024) Rodriguez de los Santos, Miguel; Kopell, Brian H.; Buxbaum Grice, Ariela; Ganesh, Gauri; Yang, Andy; Amini, Pardis; Liharska, Lora E.; Vornholt, Eric; Fullard, John F.; Dong, Pengfei; Park, Eric; Zipkowitz, Sarah; Kaji, Deepak A.; Thompson, Ryan C.; Liu, Donjing; Park, You Jeong; Cheng, Esther; Ziafat, Kimia; Moya, Emily; Fennessy, Brian; Wilkins, Lillian; Silk, Hannah; Linares, Lisa M.; Sullivan, Brendan; Cohen, Vanessa; Kota, Prashant; Feng, Claudia; Johnson, Jessica S.; Rieder, Marysia-Kolbe; Scarpa, Joseph; Nadkarni, Girish N.; Wang, Minghui; Zhang, Bin; Sklar, Pamela; Beckmann, Noam D.; Schadt, Eric E.; Roussos, Panos; Charney, Alexander W.; Breen, Michael S. Share Save
Dual-specificity protein phosphatase 6 (DUSP6) overexpression reduces amyloid load and improves memory deficits in male 5xFAD mice Pan, Allen L.; Audrain, Mickael; Sakakibara, Emmy; Joshi, Rajeev; Zhu, Xiaodong; Wang, Qian; Wang, Minghui; Beckmann, Noam D.; Schadt, Eric E.; Gandy, Sam; Zhang, Bin; Ehrlich, Michelle E.; Salton, Stephen R. Share Save
Divergent landscapes of A-to-I editing in postmortem and living human brain de los Santos, Miguel Rodriguez; Kopell, Brian H.; Grice, Ariela Buxbaum; Ganesh, Gauri; Yang, Andy; Amini, Pardis; Liharska, Lora E.; Vornholt, Eric; Fullard, John F.; Dong, Pengfei; Park, Eric; Zipkowitz, Sarah; Kaji, Deepak A.; Thompson, Ryan C.; Liu, Donjing; Park, You Jeong; Cheng, Esther; Ziafat, Kimia; Moya, Emily; Fennessy, Brian; Wilkins, Lillian; Silk, Hannah; Linares, Lisa M.; Sullivan, Brendan; Cohen, Vanessa; Kota, Prashant; Feng, Claudia; Johnson, Jessica S.; Rieder, Marysia-Kolbe; Scarpa, Joseph; Nadkarni, Girish N.; Wang, Minghui; Zhang, Bin; Sklar, Pamela; Beckmann, Noam D.; Schadt, Eric E.; Roussos, Panos; Charney, Alexander W.; Breen, Michael S. Share Save
An algorithm to identify patients aged 0-3 with rare genetic disorders Webb, Bryn D.; Lau, Lisa Y.; Tsevdos, Despina; Shewcraft, Ryan A.; Corrigan, David; Shi, Lisong; Lee, Seungwoo; Tyler, Jonathan; Li, Shilong; Wang, Zichen; Stolovitzky, Gustavo; Edelmann, Lisa; Chen, Rong; Schadt, Eric E.; Li, Li Share Save
Analytical challenges in omics research on asthma and allergy: A National Institute of Allergy and Infectious Diseases workshop Bunyavanich, Supinda; Becker, Patrice M.; Altman, Matthew C.; Lasky-Su, Jessica; Ober, Carole; Zengler, Karsten; Berdyshev, Evgeny; Bonneau, Richard; Chatila, Talal; Chatterjee, Nilanjan; Chung, Kian Fan; Cutcliffe, Colleen; Davidson, Wendy; Dong, Gang; Fang, Gang; Fulkerson, Patricia; Himes, Blanca E.; Liang, Liming; Mathias, Rasika A.; Ogino, Shuji; Petrosino, Joseph; Price, Nathan D.; Schadt, Eric; Schofield, James; Seibold, Max A.; Steen, Hanno; Wheatley, Lisa; Zhang, Hongmei; Togias, Alkis; Hasegawa, Kohei Share Save
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Integration of transcriptomes of senescent cell models with multi-tissue patient samples reveals reduced COL6A3 as an inducer of senescence Savic, Radoslav; Yang, Jialiang; Koplev, Simon; An, Mahru C.; Patel, Priyanka L.; O'Brien, Robert N.; Dubose, Brittany N.; Dodatko, Tetyana; Rogatsky, Eduard; Sukhavasi, Katyayani; Ermel, Raili; Ruusalepp, Arno; Houten, Sander M.; Kovacic, Jason C.; Stewart, Andrew F.; Yohn, Christopher B.; Schadt, Eric E.; Laberge, Remi-Martin; Bjorkegren, Johan L. M.; Tu, Zhidong; Argmann, Carmen Share Save
Isoform-resolved transcriptome of the human preimplantation embryo Torre, Denis; Francoeur, Nancy J.; Kalma, Yael; Carmel, Ilana Gross; Melo, Betsaida S.; Deikus, Gintaras; Allette, Kimaada; Flohr, Ron; Fridrikh, Maya; Vlachos, Konstantinos; Madrid, Kent; Shah, Hardik; Wang, Ying-Chih; Sridhar, Shwetha H.; Smith, Melissa L.; Eliyahu, Efrat; Azem, Foad; Amir, Hadar; Mayshar, Yoav; Marazzi, Ivan; Guccione, Ernesto; Schadt, Eric; Ben-Yosef, Dalit; Sebra, Robert Share Save
Proteomic characterization of acute kidney injury in patients hospitalized with SARS-CoV2 infection Paranjpe, Ishan; Jayaraman, Pushkala; Su, Chen-Yang; Zhou, Sirui; Chen, Steven; Thompson, Ryan; Del Valle, Diane Marie; Kenigsberg, Ephraim; Zhao, Shan; Jaladanki, Suraj; Chaudhary, Kumardeep; Ascolillo, Steven; Vaid, Akhil; Gonzalez-Kozlova, Edgar; Kauffman, Justin; Kumar, Arvind; Paranjpe, Manish; Hagan, Ross O.; Kamat, Samir; Gulamali, Faris F.; Xie, Hui; Harris, Joceyln; Patel, Manishkumar; Argueta, Kimberly; Batchelor, Craig; Nie, Kai; Dellepiane, Sergio; Scott, Leisha; Levin, Matthew A.; He, John Cijiang; Suarez-Farinas, Mayte; Coca, Steven G.; Chan, Lili; Azeloglu, Evren U.; Schadt, Eric; Beckmann, Noam; Gnjatic, Sacha; Merad, Miram; Kim-Schulze, Seunghee; Richards, Brent; Glicksberg, Benjamin S.; Charney, Alexander W.; Nadkarni, Girish N. Share Save
Circulating proteins to predict COVID-19 severity Su, Chen-Yang; Zhou, Sirui; Gonzalez-Kozlova, Edgar; Butler-Laporte, Guillaume; Brunet-Ratnasingham, Elsa; Nakanishi, Tomoko; Jeon, Wonseok R.; Morrison, David; Laurent, Laetitia; Afilalo, Jonathan; Afilalo, Marc; Henry, Danielle; Chen, Yiheng; Carrasco-Zanini, Julia; Farjoun, Yossi; Pietzner, Maik; Kimchi, Nofar; Afrasiabi, Zaman; Rezk, Nardin; Bouab, Meriem; Petitjean, Louis; Guzman, Charlotte; Xue, Xiaoqing; Tselios, Chris; Vulesevic, Branka; Adeleye, Olumide; Abdullah, Tala; Almamlouk, Noor; Moussa, Yara; DeLuca, Chantal; Duggan, Naomi; Schurr, Erwin; Brassard, Nathalie; Durand, Madeleine; Del Valle, Diane Marie; Thompson, Ryan A.; Cedillo, Mario; Schadt, Eric; Nie, Kai W.; Simons, Nicole; Mouskas, Konstantinos; Zaki, Nicolas; Patel, Manishkumar; Xie, Hui; Harris, Jocelyn; Marvin, Robert; Cheng, Esther; Tuballes, Kevin; Argueta, Kimberly; Scott, Ieisha; Greenwood, Celia M. T.; Paterson, Clare A.; Hinterberg, Michael; Langenberg, Claudia; Forgetta, Vincenzo; Pineau, Joelle; Mooser, Vincent; Marron, Thomas D.; Beckmann, Noam; Kim-schulze, Seunghee W.; Charney, Alexander; Gnjatic, Sacha E.; Kaufmann, Daniel; Merad, Miriam; Richards, J. Brent Share Save
A temporal classifier predicts histopathology state and parses acute-chronic phasing in inflammatory bowel disease patients Peters, Lauren A.; Friedman, Joshua R.; Stojmirovic, Aleksandar; Hagen, Jacob; Houten, Sander; Dodatko, Tetyana; Amaro, Mariana P.; Restrepo, Paula; Chai, Zhi; Rodrigo Mora, J.; Raymond, Holly A.; Curran, Mark; Dobrin, Radu; Das, Anuk; Xiong, Huabao; Schadt, Eric E.; Argmann, Carmen; Losic, Bojan Share Save
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