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Tomás F. D. Silva

bioisi

7H-index
26Paper Count
263Citation Count
Published Papers 9
Publication Date
PLUMED Tutorials: A collaborative, community-driven learning ecosystem
err2025-03-07
err1
PREAI
errTribello, Gareth A.; Bonomi, Massimiliano; Bussi, Giovanni; Camilloni, Carlo; Armstrong, Blake I.; Arsiccio, Andrea; Aureli, Simone; Ballabio, Federico; Bernetti, Mattia; Bonati, Luigi; Brookes, Samuel G. H.; Brotzakis, Z. Faidon; Capelli, Riccardo; Ceriotti, Michele; Chan, Kam-Tung; Cossio, Pilar; Dasetty, Siva; Donadio, Davide; Ensing, Bernd; Ferguson, Andrew L.; Fraux, Guillaume; Gale, Julian D.; Gervasio, Francesco Luigi; Giorgino, Toni; Herringer, Nicholas S. M.; Hocky, Glen M.; Hoff, Samuel E.; Invernizzi, Michele; Languin-Cattoen, Olivier; Leone, Vanessa; Limongelli, Vittorio; Lopez-Acevedo, Olga; Marinelli, Fabrizio; Febrer Martinez, Pedro; Masetti, Matteo; Mehdi, Shams; Michaelides, Angelos; Murtada, Mhd Hussein; Parrinello, Michele; Piaggi, Pablo M.; Pietropaolo, Adriana; Pietrucci, Fabio; Pipolo, Silvio; Pritchard, Claire; Raiteri, Paolo; Raniolo, Stefano; Rapetti, Daniele; Rizzi, Valerio; Rydzewski, Jakub; Salvalaglio, Matteo; Schran, Christoph; Seal, Aniruddha; Shayesteh Zadeh, Armin; Silva, Tomas F. D.; Spiwok, Vojtech; Stirnemann, Guillaume; Sucerquia, Daniel; Tiwary, Pratyush; Valsson, Omar; Vendruscolo, Michele; Voth, Gregory A.; White, Andrew D.; Wu, Jiangbo
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Arginine Residues Modulate the Membrane Interactions of pHLIP Peptides
err2023-07-03
err3
errOAAI
errSilva, Tomaas F. D.; Visca, Hannah; Klumpp, Craig; Andreev, Oleg A.; Reshetnyak, Yana K.; Machuqueiro, Miguel
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In Silico End-to-End Protein-Ligand Interaction Characterization Pipeline: The Case of SARS-CoV-2
err2021-11-04
err7
PREAI
errRosario-Ferreira, Nicia; Baptista, Salete J.; Barreto, Carlos A., V; Rodrigues, Filipe E. P.; Silva, Tomas F. D.; Ferreira, Sara G. F.; Vitorino, Joao N. M.; Melo, Rita; Victor, Bruno L.; Machuqueiro, Miguel; Moreira, Irina S.
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Improved Protocol to Tackle the pH Effects on Membrane-Inserting Peptides
err2021-06-11
err14
PREAI
errSilva, Tomas F. D.; Vila-Vicosa, Diogo; Machuqueiro, Miguel
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The Lysosomotropic Activity of Hydrophobic Weak Base Drugs is Mediated via Their Intercalation into the Lysosomal Membrane
errCELLS
IF5.2
err2020-04-27
err39
errOAAI
errStark, Michal; Silva, Tomas F. D.; Levin, Guy; Machuqueiro, Miguel; Assaraf, Yehuda G.
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The Impact of Using Single Atomistic Long-Range Cutoff Schemes with the GROMOS 54A7 Force Field
err2018-10-24
err49
PREAI
errSilva, Tomas F. D.; Vila-Vicosa, Diogo; Reis, Pedro B. P. S.; Victor, Bruno L.; Diem, Matthias; Oostenbrink, Chris; Machuqueiro, Miguel
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Membrane-Induced pKa Shifts in wt-pHLIP and Its L16H Variant
err2018-05-07
err35
errOAAI
errVila-Vicosa, Diogo; Silva, Tomas F. D.; Slaybaugh, Gregory; Reshetnyak, Yana K.; Andreev, Oleg A.; Machuqueiro, Miguel
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