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Ryan Emerson

independent researcher

40H-index
223Paper Count
1.6WCitation Count
Published Papers 39
Publication Date
Identification of a type 1 diabetes–associated T cell receptor repertoire signature from the human peripheral blood
err2026-02-13
err0
errOAAI
errPuneet Rawat; Melanie R. Shapiro; Leeana D. Peters; Michael Widrich; Koshlan Mayer-Blackwell; Keshav Motwani; Milena Pavlović; Ghadi al Hajj; Amanda L. Posgai; Chakravarthi Kanduri; Giulio Isacchini; Maria Chernigovskaya; Lonneke Scheffer; Kartik Motwani; Leandro Octavio Balzano-Nogueira; Camryn M. Pettenger-Willey; Sebastiaan Valkiers; Laura M. Jacobsen; Michael J. Haller; Desmond A. Schatz; Clive H. Wasserfall; Ryan O. Emerson; Andrew J. Fiore-Gartland; Mark A. Atkinson; Günter Klambauer; Geir Kjetil Sandve; Victor Greiff; Todd M. Brusko
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AlphaBind, a domain-specific model to predict and optimize antibody–antigen binding affinity
errmAbs
IF7.3
err2025-07-22
err0
errOAAI
errAditya A. Agarwal; James Harrang; David Noble; Kerry L. McGowan; Adrian W. Lange; Emily Engelhart; Miranda C. Lahman; Jeffrey Adamo; Xin Yu; Oliver Serang; Kyle J. Minch; Kimberly Y. Wellman; David A. Younger; Randolph M. Lopez; Ryan O. Emerson
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Impact of T Cell Repertoire Diversity on Mortality Following Cord Blood Transplantation
err2020-10-09
err3
errOAAI
errMilano, F.; Emerson, R. O.; Salit, R.; Guthrie, K. A.; Thur, L. A.; Dahlberg, A.; Robins, H. S.; Delaney, C.
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Analytical evaluation of the clonoSEQ Assay for establishing measurable (minimal) residual disease in acute lymphoblastic leukemia, chronic lymphocytic leukemia, and multiple myeloma
err2020-06-30
err91
errOAAI
errChing, Travers; Duncan, Megan E.; Newman-Eerkes, Tera; McWhorter, Mollie M. E.; Tracy, Jeffrey M.; Steen, Michelle S.; Brown, Ryan P.; Venkatasubbarao, Srivatsa; Akers, Nicholas K.; Vignali, Marissa; Moorhead, Martin E.; Watson, Drew; Emerson, Ryan O.; Mann, Tobias P.; Cimler, B. Melina; Swatkowski, Pamela L.; Kirsch, Ilan R.; Sang, Charles; Robins, Harlan S.; Howie, Bryan; Sherwood, Anna
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Comprehensive T cell repertoire characterization of non-small cell lung cancer
err2020-01-30
err153
errOAAI
errReuben, Alexandre; Zhang, Jiexin; Chiou, Shin-Heng; Gittelman, Rachel M.; Li, Jun; Lee, Won-Chul; Fujimoto, Junya; Behrens, Carmen; Liu, Xiaoke; Wang, Feng; Quek, Kelly; Wang, Chunlin; Kheradmand, Farrah; Chen, Runzhe; Chow, Chi-Wan; Lin, Heather; Bernatchez, Chantale; Jalali, Ali; Hu, Xin; Wu, Chang-Jiun; Eterovic, Agda Karina; Parra, Edwin Roger; Yusko, Erik; Emerson, Ryan; Benzeno, Sharon; Vignali, Marissa; Wu, Xifeng; Ye, Yuanqing; Little, Latasha D.; Gumbs, Curtis; Mao, Xizeng; Song, Xingzhi; Tippen, Samantha; Thornton, Rebecca L.; Cascone, Tina; Snyder, Alexandra; Wargo, Jennifer A.; Herbst, Roy; Swisher, Stephen; Kadara, Humam; Moran, Cesar; Kalhor, Neda; Zhang, Jianhua; Scheet, Paul; Vaporciyan, Ara A.; Sepesi, Boris; Gibbons, Don L.; Robins, Harlan; Hwu, Patrick; Heymach, John V.; Sharma, Padmanee; Allison, James P.; Baladandayuthapani, Veera; Lee, Jack J.; Davis, Mark M.; Wistuba, Ignacio I.; Futreal, P. Andrew; Zhang, Jianjun
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T Cell Repertoire Dynamics during Pregnancy in Multiple Sclerosis
err2019-10-01
err23
errOAAI
errRamien, Caren; Yusko, Erik C.; Engler, Jan Broder; Gamradt, Stefanie; Patas, Kostas; Schweingruber, Nils; Willing, Anne; Rosenkranz, Sina Catherine; Diemert, Anke; Harrison, Anja; Vignali, Marissa; Sanders, Catherine; Robins, Harlan S.; Tolosa, Eva; Heesen, Christoph; Arck, Petra C.; Scheffold, Alexander; Chan, Kenneth; Emerson, Ryan O.; Friese, Manuel A.; Gold, Stefan M.
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Radiotherapy induces responses of lung cancer to CTLA-4 blockade
err2018-11-05
err697
errOAAI
errFormenti, Silvia C.; Rudqvist, Nils-Petter; Golden, Encouse; Cooper, Benjamin; Wennerberg, Erik; Lhuillier, Claire; Vanpouille-Box, Claire; Friedman, Kent; de Andrade, Lucas Ferrari; Wucherpfennig, Kai W.; Heguy, Adriana; Imai, Naoko; Gnjatic, Sacha; Emerson, Ryan O.; Zhou, Xi Kathy; Zhang, Tuo; Chachoua, Abraham; Demaria, Sandra
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Staged development of long-lived T-cell receptor αβ TH17 resident memory T-cell population to Candida albicans after skin infection
err2018-08-01
err105
errOAAI
errPark, Chang Ook; Fu, Xiujun; Jiang, Xiaodong; Pan, Youdong; Teague, Jessica E.; Collins, Nicholas; Tian, Tian; O'Malley, John T.; Emerson, Ryan O.; Kim, Ji Hye; Jung, Yookyung; Watanabe, Rei; Fuhlbrigge, Robert C.; Carbone, Francis R.; Gebhardt, Thomas; Clark, Rachael A.; Lin, Charles P.; Kupper, Thomas S.
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CD1b Tetramers Identify T Cells that Recognize Natural and Synthetic Diacylated Sulfoglycolipids from Mycobacterium tuberculosis
err2018-04-01
err23
errOAAI
errJames, Charlotte A.; Yu, Krystle K. Q.; Gilleron, Martine; Prandi, Jacques; Yedulla, Vijayendar R.; Moleda, Zuzanna Z.; Diamanti, Eleonora; Khan, Momin; Aggarwal, Varinder K.; Reijneveld, Josephine F.; Reinink, Peter; Lenz, Stefanie; Emerson, Ryan O.; Scriba, Thomas J.; Souter, Michael N. T.; Godfrey, Dale I.; Pellicci, Daniel G.; Moody, D. Branch; Minnaard, Adriaan J.; Seshadri, Chetan; Van Rhijn, Ildiko
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Immunophenotyping of pediatric brain tumors: correlating immune infiltrate with histology, mutational load, and survival and assessing clonal T cell response
err2018-01-10
err45
PREAI
errPlant, Ashley S.; Koyama, Shohei; Sinai, Claire; Solomon, Isaac H.; Griffin, Gabriel K.; Ligon, Keith L.; Bandopadhayay, Pratiti; Betensky, Rebecca; Emerson, Ryan; Dranoff, Glenn; Kieran, Mark W.; Ritz, Jerome
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TCR Repertoire Intratumor Heterogeneity in Localized Lung Adenocarcinomas: An Association with Predicted Neoantigen Heterogeneity and Postsurgical Recurrence
err2017-10-02
err164
errOAAI
errReuben, Alexandre; Gittelman, Rachel; Gao, Jianjun; Zhang, Jiexin; Yusko, Erik C.; Wu, Chang-Jiun; Emerson, Ryan; Zhang, Jianhua; Tipton, Christopher; Li, Jun; Quek, Kelly; Gopalakrishnan, Vancheswaran; Chen, Runzhe; Vence, Luis M.; Cascone, Tina; Vignali, Marissa; Fujimoto, Junya; Rodriguez-Canales, Jaime; Parra, Edwin R.; Little, Latasha D.; Gumbs, Curtis; Forget, Marie-Andree; Federico, Lorenzo; Haymaker, Cara; Behrens, Carmen; Benzeno, Sharon; Bernatchez, Chantale; Sepesi, Boris; Gibbons, Don L.; Wargo, Jennifer A.; William, William N., Jr.; Swisher, Stephen; Heymach, John V.; Robins, Harlan; Lee, J. Jack; Sharma, Padmanee; Allison, James P.; Futreal, P. Andrew; Wistuba, Ignacio I.; Zhang, Jianjun
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Nonlesional atopic dermatitis skin shares similar T-cell clones with lesional tissues
err2017-06-28
err69
PREAI
errBrunner, P. M.; Emerson, R. O.; Tipton, C.; Garcet, S.; Khattri, S.; Coats, I.; Krueger, J. G.; Guttman-Yassky, E.
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T-Cell Infiltration and Clonality Correlate With Programmed Cell Death Protein 1 and Programmed Death-Ligand 1 Expression in Patients With Soft Tissue Sarcomas
errCANCER
IF5.1
err2017-05-02
err213
errOAAI
errPollack, Seth M.; He, Qianchuan; Yearley, Jennifer H.; Emerson, Ryan; Vignali, Marissa; Zhang, Yuzheng; Redman, Mary W.; Baker, Kelsey K.; Cooper, Sara; Donahue, Bailey; Loggers, Elizabeth T.; Cranmer, Lee D.; Spraker, Matthew B.; Seo, Y. David; Pillarisetty, Venu G.; Ricciotti, Robert W.; Hoch, Benjamin L.; McClanahan, Terrill K.; Murphy, Erin; Blumenschein, Wendy M.; Townson, Steven M.; Benzeno, Sharon; Riddell, Stanley R.; Jones, Robin L.
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Non-lesional atopic dermatitis skin shares similar T cell clones with lesional tissues
err2017-05-01
err0
errOAAI
errEmerson, R. O.; Brunner, P. M.; Tipton, C.; Garcet, S.; Khattri, S.; Krueger, J. G.; Guttman-Yassky, E.
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Immunosequencing identifies signatures of cytomegalovirus exposure history and HLA-mediated effects on the T cell repertoire
err2017-04-03
err341
PREAI
errEmerson, Ryan O.; DeWitt, William S.; Vignali, Marissa; Gravley, Jenna; Hu, Joyce K.; Osborne, Edward J.; Desmarais, Cindy; Klinger, Mark; Carlson, Christopher S.; Hansen, John A.; Rieder, Mark; Robins, Harlan S.
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Discovery of T Cell Receptor β Motifs Specific to HLA-B27-Positive Ankylosing Spondylitis by Deep Repertoire Sequence Analysis
err2017-03-29
err82
errOAAI
errFaham, Malek; Carlton, Victoria; Moorhead, Martin; Zheng, Jianbiao; Klinger, Mark; Pepin, Francois; Asbury, Thomas; Vignali, Marissa; Emerson, Ryan O.; Robins, Harlan S.; Ireland, James; Baechler-Gillespie, Emily; Inman, Robert D.
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Tracking the fate and origin of clinically relevant adoptively transferred CD8+ T cells in vivo
err2017-02-24
err47
errOAAI
errChapuis, Aude G.; Desmarais, Cindy; Emerson, Ryan; Schmitt, Thomas M.; Shibuya, Kendall C.; Lai, Ivy P.; Wagener, Felecia; Chou, Jeffrey; Roberts, Ilana M.; Coffey, David G.; Warren, Edus H.; Robins, Harlan; Greenberg, Philip D.; Yee, Cassian
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Tissue distribution and clonal diversity of the T and B cell repertoire in type 1 diabetes
err2016-12-08
err108
errOAAI
errSeay, Howard R.; Yusko, Erik; Rothweiler, Stephanie J.; Zhang, Lin; Posgal, Amanda L.; Campbell-Thompson, Martha; Vignali, Marissa; Emerson, Ryan O.; Kaddis, John S.; Ko, Dave; Nakayama, Maki; Smith, Mia J.; Cambier, John C.; Pugliese, Alberto; Atkinson, Mark A.; Robins, Harlan S.; Brusko, Todd M.
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Clonal expansion of CD8 T cells in the systemic circulation precedes development of ipilimumab-induced toxicities
err2016-10-03
err192
errOAAI
errSubudhi, Sumit K.; Aparicio, Ana; Gao, Jianjun; Zurita, Amado J.; Araujo, John C.; Logothetis, Christopher J.; Tahir, Salahaldin A.; Korivi, Brinda R.; Slack, Rebecca S.; Vence, Luis; Emerson, Ryan O.; Yusko, Erik; Vignali, Marissa; Robins, Harlan S.; Sun, Jingjing; Allison, James P.; Sharma, Padmanee
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