Not logged in Analytical performance of a genome-wide methylome enrichment platform to detect minimal residual disease from plasma-derived cell-free DNA Shen, Shu Yi; Cirlan, Iulia; Vincelli, Felicia; Brown, Ben; Min, Jun; Burgener, Justin; Zhang, Junjun; Newton, Yulia; Gruca, Margaret; Licon, Abel; Zhang, Jing; Hartman, Anne-Renee; Williams, Alan; Mellert, Hestia; De Carvalho, Daniel D. Share Save
A Genomic Analysis of Esophageal Squamous Cell Carcinoma in Eastern Africa Van Loon, Katherine; Mmbaga, Elia J.; Mushi, Beatrice P.; Selekwa, Msiba; Mwanga, Ally; Akoko, Larry O.; Mwaiselage, Julius; Mosha, Innocent; Ng, Dianna L.; Wu, Wei; Silverstein, Jordyn; Mulima, Gift; Kaimila, Bongani; Gopal, Satish; Snell, Jeff M.; Benz, Stephen Charles; Vaske, Charles; Sanborn, Zack; Sedgewick, Andrew J.; Radenbaugh, Amie; Newton, Yulia; Collisson, Eric A. Share Save
An international report on bacterial communities in esophageal squamous cell carcinoma Nomburg, Jason; Bullman, Susan; Nasrollahzadeh, Dariush; Collisson, Eric A.; Abedi-Ardekani, Behnoush; Akoko, Larry O.; Atkins, Joshua R.; Buckle, Geoffrey C.; Gopal, Satish; Hu, Nan; Kaimila, Bongani; Khoshnia, Masoud; Malekzadeh, Reza; Menya, Diana; Mmbaga, Blandina T.; Moody, Sarah; Mulima, Gift; Mushi, Beatrice P.; Mwaiselage, Julius; Mwanga, Ally; Newton, Yulia; Ng, Dianna L.; Radenbaugh, Amie; Rwakatema, Deogratias S.; Selekwa, Msiba; Schuz, Joachim; Taylor, Philip R.; Vaske, Charles; Goldstein, Alisa; Stratton, Michael R.; McCormack, Valerie; Brennan, Paul; DeCaprio, James A.; Meyerson, Matthew; Mmbaga, Elia J.; Van Loon, Katherine Share Save
Large scale, robust, and accurate whole transcriptome profiling from clinical formalin-fixed paraffin-embedded samples Newton, Yulia; Sedgewick, Andrew J.; Cisneros, Luis; Golovato, Justin; Johnson, Mark; Szeto, Christopher W.; Rabizadeh, Shahrooz; Sanborn, J. Zachary; Benz, Stephen Charles; Vaske, Charles Share Save
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A risk-associated Active transcriptome phenotype expressed by histologically normal human breast tissue and linked to a pro-tumorigenic adipocyte population Kang, Taekyu; Yau, Christina; Wong, Christopher K.; Sanborn, John Z.; Newton, Yulia; Vaske, Charlie; Benz, Stephen C.; Krings, Gregor; Camarda, Roman; Henry, Jill E.; Stuart, Josh; Powell, Mark; Benz, Christopher C. Share Save
The normal breast Active transcriptome associated with future breast cancer risk is driven by a dysregulated adipocyte microenvironment Benz, Christopher C.; Kang, Taekyu; Yau, Christina; Wong, Chris; Newton, Yulia; Vaske, Charlie; Benz, Stephen C.; Krings, Gregor; Camarda, Roman; Henry, Jill E.; Stuart, Josh; Powell, Mark Share Save
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Integrative Molecular Characterization of Malignant Pleural Mesothelioma Hmeljaki, Jutija; Sanchez-Vega, Francisco; Hoadley, Katherine A.; Shih, Juliann; Stewart, Chip; Heiman, David; Tarpeyg, Patrick; Danitova, Ludmila; Drill, Esther; Gibb, Ewan A.; Bowlby, Reanne; Kanchil, Rupa; Osmanbeyoglull, Hatice U.; Sekido, Yoshitaka; Takeshita, Jumpei; Newton, Yulia; Graim, Kiley; Gupta, Manaswi; Gaylg, Cart M.; Diaol, Lixia; Gibbs, David L.; Thorsson, Vesteinn; Lype, Lisa; Kanthetir, Havish; Severson, David T.; Ravegnini, Gloria; Desrneules, Patrice; Jungbluth, Achim A.; Travis, William D.; Dacic, Sanja; Chirieac, Lucian R.; Galateau-Salle, Francoise; Fujimoto, Junya; Husain, Aliya N.; Silveira, Henrique C.; Rusch, Valerie W.; Rintoul, Robert C.; Pass, Harvey; Kindler, Heciy; Zauderer, Marjorie G.; Kwiatkowski, David J.; Bueno, Raphael; Tsaols, Anne S.; Creaney, Jenette; Lichtenberg, Tara; Leraas, Kristen; Bowen, Jay; Felau, Ina; Zenklusen, Jean Claude; Akbanil, Rehan; Cherniack, Andrew D.; Byers, Lauren A.; Noble, Michael S.; Fletcher, Jonathan A.; Robertsong, A. Gordon; Shen, Rongtai; Aburatani, Hiroyuki; Robinson, Bruce W.; Campbells, Peter; Ladanyi, Marc Share Save
Potential drug targets for adenoid cystic carcinoma elucidated by proteogenomic analysis Thyparambil, Sheeno P.; Kim, Yeoun Jin; Chambers, Andrew G.; Yan, Dongyao; Sellappan, Shankar; Sedgewick, Andrew J.; Newton, Yulia; Sanborn, J. Zachary; Vaske, Charles J.; Benz, Stephen C.; Cecchi, Fabiola; Kang, Hyunseok; Hembrough, Todd A. Share Save
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Integrated Molecular Characterization of Testicular Germ Cell Tumors Shen, Hui; Shih, Juliann; Hollern, Daniel P.; Wang, Linghua; Bowlby, Reanne; Tickoo, Satish K.; Thorsson, Vesteinn; Mungall, Andrew J.; Newton, Yulia; Hegde, Apurva M.; Armenia, Joshua; Sanchez-Vega, Francisco; Pluta, John; Pyle, Louise C.; Mehra, Rohit; Reuter, Victor E.; Godoy, Guilherme; Jones, Jeffrey; Shelley, Carl S.; Feldman, Darren R.; Vidal, Daniel O.; Lesse, Davor; Kulis, Tomislav; Carcano, Flavio M.; Leraas, Kristen M.; Lichtenberg, Tara M.; Brooks, Denise; Cherniack, Andrew D.; Cho, Juok; Heiman, David, I; Kasaian, Katayoon; Liu, Minwei; Noble, Michael S.; Xi, Liu; Zhang, Hailei; Zhou, Wanding; ZenKlusen, Jean C.; Hutter, Carolyn M.; Felau, Ina; Zhang, Jiashan; Schultz, Nikolaus; Getz, Gad; Meyerson, Matthew; Stuart, Joshua M.; Akbani, Rehan; Wheeler, David A.; Laird, Peter W.; Nathanson, Katherine L.; Cortessis, Victoria K.; Hoadley, Katherine A. Share Save
A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines Gonen, Mehmet; Weir, Barbara A.; Cowley, Glenn S.; Vazquez, Francisca; Guan, Yuanfang; Jaiswal, Alok; Karasuyama, Masayuki; Uzunangelov, Vladislav; Wang, Tao; Tsherniak, Aviad; Howell, Sara; Marbach, Daniel; Hoff, Bruce; Norman, Thea C.; Airola, Antti; Bivol, Adrian; Bunte, Kerstin; Carlin, Daniel; Chopra, Sahil; Deran, Alden; Ellrott, Kyle; Gopalacharyulu, Peddinti; Graim, Kiley; Kaski, Samuel; Khan, Suleiman A.; Newton, Yulia; Ng, Sam; Pahikkala, Tapio; Paull, Evan; Sokolov, Artem; Tang, Hao; Tang, Jing; Wennerberg, Krister; Xie, Yang; Zhan, Xiaowei; Zhu, Fan; Aittokallio, Tero; Mamitsuka, Hiroshi; Stuart, Joshua M.; Boehm, Jesse S.; Root, David E.; Xiao, Guanghua; Stolovitzky, Gustavo; Hahn, William C.; Margolin, Adam A. Share Save
TumorMap: Exploring the Molecular Similarities of Cancer Samples in an Interactive Portal Newton, Yulia; Novak, Adam M.; Swatloski, Teresa; McColl, Duncan C.; Chopra, Sahil; Graim, Kiley; Weinstein, Alana S.; Baertsch, Robert; Salama, Sofie R.; Ellrott, Kyle; Chopra, Manu; Goldstein, Theodore C.; Haussler, David; Morozova, Olena; Stuart, Joshua M. Share Save
A pan-cancer analysis framework for incorporating gene expression information into clinical interpretation of pediatric cancer genomic data Morozova, Olena; Newton, Yulia; Shah, Avanthi Tayi; Beale, Holly; Lam, Du Linh; Vivian, John; Bjork, Isabel; Goldstein, Theodore; Stuart, Josh; Salama, Sofie; Sweet-Cordero, E. Alejandro; Haussler, David Share Save
Identifying confidently measured genes in single pediatric cancer patient samples using RNA sequencing Beale, Holly; Du Linh Lam; Vivian, John; Newton, Yulia; Shah, Avanthi Tayi; Bjork, Isabel; Goldstein, Ted; Brooks, Angela N.; Stuart, Josh; Salama, Sofie; Sweet-Cordero, E. Alejandro; Haussler, David; Morozova, Olena Share Save
Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles (vol 18, pg 2780, 2017) Farshidfar, Farshad; Zheng, Siyuan; Gingras, Marie-Claude; Newton, Yulia; Shih, Juliann; Robertson, A. Gordon; Hinoue, Toshinori; Hoadley, Katherine A.; Gibb, Ewan A.; Roszik, Jason; Covington, Kyle R.; Wu, Chia-Chin; Shinbrot, Eve; Stransky, Nicolas; Hegde, Apurva; Yang, Ju Dong; Reznik, Ed; Sadeghi, Sara; Pedamallu, Chandra Sekhar; Ojesina, Akinyemi I.; Hess, Julian M.; Auman, J. Todd; Rhie, Suhn K.; Bowlby, Reanne; Borad, Mitesh J.; Zhu, Andrew X.; Stuart, Josh M.; Sander, Chris; Akbani, Rehan; Cherniack, Andrew D.; Deshpande, Vikram; Mounajjed, Taofic; Foo, Wai Chin; Torbenson, Michael S.; Kleiner, David E.; Laird, Peter W.; Wheeler, David A.; McRee, Autumn J.; Bathe, Oliver F.; Andersen, Jesper B.; Bardeesy, Nabeel; Roberts, Lewis R.; Kwong, Lawrence N. Share Save
Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles Farshidfar, Farshad; Zheng, Siyuan; Gingras, Marie-Claude; Newton, Yulia; Shih, Juliann; Robertson, A. Gordon; Hinoue, Toshinori; Hoadley, Katherine A.; Gibb, Ewan A.; Roszik, Jason; Covington, Kyle R.; Wu, Chia-Chin; Shinbrot, Eve; Stransky, Nicolas; Hegde, Apurva; Yang, Ju Dong; Reznik, Ed; Sadeghi, Sara; Pedamallu, Chandra Sekhar; Ojesina, Akinyemi I.; Hess, Julian M.; Auman, J. Todd; Rhie, Suhn K.; Bowlby, Reanne; Borad, Mitesh J.; Zhu, Andrew X.; Stuart, Josh M.; Sander, Chris; Akbani, Rehan; Cherniack, Andrew D.; Deshpande, Vikram; Mounajjed, Taofic; Foo, Wai Chin; Torbenson, Michael S.; Kleiner, David E.; Laird, Peter W.; Wheeler, David A.; Mcree, Autumn J.; Bathe, Oliver F.; Andersen, Jesper B.; Bardeesy, Nabeel; Roberts, Lewis R.; Kwong, Lawrence N. Share Save
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