Not logged in Longitudinal host transcriptional responses to SARS-CoV-2 infection in adults with extremely high viral load Avadhanula, Vasanthi; Creighton, Chad J.; Ferlic-Stark, Laura; Nagaraj, Divya; Zhang, Yiqun; Sucgang, Richard; Nicholson, Erin G.; Rajan, Anubama; Menon, Vipin Kumar; Doddapaneni, Harshavardhan; Muzny, Donna Marie; Metcalf, Ginger A.; Cregeen, Sara Joan Javornik; Hoffman, Kristi Louise; Gibbs, Richard A.; Petrosino, Joseph F.; Piedra, Pedro A. Share Save
Somatic mutations of esophageal adenocarcinoma: a comparison between Black and White patients Lim, Hyeyeun; Gingras, Marie-Claude; Zhao, Jing; Byun, Jinyoung; Castro, Patricia D.; Tsavachidis, Spiridon; Hu, Jianhong; Doddapaneni, Harshavardhan; Han, Yi; Muzny, Donna M.; Gibbs, Richard A.; Amos, Christopher I.; Thrift, Aaron P. Share Save
Inter and intra-host diversity of RSV in hematopoietic stem cell transplant adults with normal and delayed viral clearance Avadhanula, Vasanthi; Agustinho, Daniel Paiva; Menon, Vipin Kumar; Chemaly, Roy F.; Shah, Dimpy P.; Qin, Xiang; Surathu, Anil; Doddapaneni, Harshavardhan; Muzny, Donna M.; Metcalf, Ginger A.; Cregeen, Sara Javornik; Gibbs, Richard A.; Petrosino, Joseph F.; Sedlazeck, Fritz J.; Piedra, Pedro A. Share Save
Whole-genome sequencing uncovers two loci for coronary artery calcification and identifies ARSE as a regulator of vascular calcification de Vries, Paul S.; Conomos, Matthew P.; Singh, Kuldeep; Nicholson, Christopher J.; Jain, Deepti; Hasbani, Natalie R.; Jiang, Wanlin; Lee, Sujin; Lino Cardenas, Christian L.; Lutz, Sharon M.; Wong, Doris; Guo, Xiuqing; Yao, Jie; Young, Erica P.; Tcheandjieu, Catherine; Hilliard, Austin T.; Bis, Joshua C.; Bielak, Lawrence F.; Brown, Michael R.; Musharoff, Shaila; Clarke, Shoa L.; Terry, James G.; Palmer, Nicholette D.; Yanek, Lisa R.; Xu, Huichun; Heard-Costa, Nancy; Wessel, Jennifer; Selvaraj, Margaret Sunitha; Li, Rebecca H.; Sun, Xiao; Turner, Adam W.; Stilp, Adrienne M.; Khan, Alyna; Newman, Anne B.; Rasheed, Asif; Freedman, Barry I.; Kral, Brian G.; McHugh, Caitlin P.; Hodonsky, Chani; Saleheen, Danish; Herrington, David M.; Jacobs, David R., Jr.; Nickerson, Deborah A.; Boerwinkle, Eric; Wang, Fei Fei; Heiss, Gerardo; Jun, Goo; Kinney, Greg L.; Sigurslid, Haakon H.; Doddapaneni, Harshavardhan; Hall, Ira M.; Bensenor, Isabela M.; Broome, Jai; Crapo, James D.; Wilson, James G.; Smith, Jennifer A.; Blangero, John; Vargas, Jose D.; Mosquera, Jose Verdezoto; Smith, Joshua D.; Viaud-Martinez, Karine A.; Ryan, Kathleen A.; Young, Kendra A.; Taylor, Kent D.; Lange, Leslie A.; Emery, Leslie S.; Bittencourt, Marcio S.; Budoff, Matthew J.; Montasser, May E.; Yu, Miao; Mahaney, Michael C.; Mahamdeh, Mohammed S.; Fornage, Myriam; Franceschini, Nora; Lotufo, Paulo A.; Natarajan, Pradeep; Wong, Quenna; Mathias, Rasika A.; Gibbs, Richard A.; Do, Ron; Mehran, Roxana; Tracy, Russell P.; Kim, Ryan W.; Nelson, Sarah C.; Damrauer, Scott M.; Kardia, Sharon L. R.; Rich, Stephen S.; Fuster, Valentin; Napolioni, Valerio; Zhao, Wei; Tian, Wenjie; Yin, Xianyong; Min, Yuan-, I; Manning, Alisa K.; Peloso, Gina; Kelly, Tanika N.; O'Donnell, Christopher J.; Morrison, Alanna C.; Curran, Joanne E.; Zapol, Warren M.; Bowden, Donald W.; Becker, Lewis C.; Correa, Adolfo; Mitchell, Braxton D.; Psaty, Bruce M.; Carr, John Jeffrey; Pereira, Alexandre C.; Assimes, Themistocles L.; Stitziel, Nathan O.; Hokanson, John E.; Laurie, Cecelia A.; Rotter, Jerome I.; Vasan, Ramachandran S.; Post, Wendy S.; Peyser, Patricia A.; Miller, Clint L.; Malhotra, Rajeev Share Save
Proteogenomic profiling of fresh frozen core biopsies from CALGB 40601 Jaehnig, Eric J.; Fernandez-Martinez, Aranzazu; Vashist, Tanmayi; Holt, Matthew V.; Williams, LaTerrica; Lei, Jonathan; Kim, Beom-Jun; Dou, Yongchao; Korchina, Viktoriya; Gibbs, Richard; Muzny, Donna; Doddapaneni, Harshavardhan; Rodriguez, Henry; Robles, Ana; Hiltke, Tara; Mani, D. R.; Gillette, Michael; Hyslop, Terry; Wen, Yujia; McCart, Linda; Miles, George; Carr, Steven; Zhang, Bing; Satpathy, Shankha; Ellis, Matthew; Anurag, Meenakshi Share Save
Proteogenomic Markers of Chemotherapy Resistance and Response in Triple-Negative Breast Cancer Anurag, Meenakshi; Jaehnig, Eric J.; Krug, Karsten; Lei, Jonathan T.; Bergstrom, Erik J.; Kim, Beom-Jun; Vashist, Tanmayi D.; Huynh, Anh Minh Tran; Dou, Yongchao; Gou, Xuxu; Huang, Chen; Shi, Zhiao; Wen, Bo; Korchina, Viktoriya; Gibbs, Richard A.; Muzny, Donna M.; Doddapaneni, Harshavardhan; Dobrolecki, Lacey E.; Rodriguez, Henry; Robles, Ana I.; Hiltke, Tara; Lewis, Michael T.; Nangia, Julie R.; Shafaee, Maryam Nemati; Li, Shunqiang; Hagemann, Ian S.; Hoog, Jeremy; Lim, Bora; Osborne, C. Kent; Mani, D. R.; Gillette, Michael A.; Zhang, Bing; Echeverria, Gloria V.; Miles, George; Rimawi, Mothaffar F.; Carr, Steven A.; Ademuyiwa, Foluso O.; Satpathy, Shankha; Ellis, Matthew J. Share Save
Genome Sequencing in the Parkinson Disease Clinic Hill, Emily J.; Robak, Laurie A.; Al-Ouran, Rami; Deger, Jennifer; Fong, Jamie C.; Vandeventer, Paul Jerrod; Schulman, Emily; Rao, Sindhu; Saade, Hiba; Savitt, Joseph M.; von Coelln, Rainer; Desai, Neeja; Doddapaneni, Harshavardhan; Salvi, Sejal; Dugan-Perez, Shannon; Muzny, Donna M.; McGuire, Amy L.; Liu, Zhandong; Gibbs, Richard A.; Shaw, Chad; Jankovic, Joseph; Shulman, Lisa M.; Shulman, Joshua M. Share Save
Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus Harris, R. Alan; Raveendran, Muthuswamy; Lyfoung, Dustin T.; Sedlazeck, Fritz J.; Mahmoud, Medhat; Prall, Trent M.; Karl, Julie A.; Doddapaneni, Harshavardhan; Meng, Qingchang; Han, Yi; Muzny, Donna; Wiseman, Roger W.; O'Connor, David H.; Rogers, Jeffrey Share Save
Polygenic transcriptome risk scores for COPD and lung function improve cross-ethnic portability of prediction in the NHLBI TOPMed program Hu, Xiaowei; Qiao, Dandi; Kim, Wonji; Moll, Matthew; Balte, Pallavi P.; Lange, Leslie A.; Bartz, Traci M.; Kumar, Rajesh; Li, Xingnan; Yu, Bing; Cade, Brian E.; Laurie, Cecelia A.; Sofer, Tamar; Ruczinski, Ingo; Nickerson, Deborah A.; Muzny, Donna M.; Metcalf, Ginger A.; Doddapaneni, Harshavardhan; Gabriel, Stacy; Gupta, Namrata; Dugan-Perez, Shannon; Cupples, L. Adrienne; Loehr, Laura R.; Jain, Deepti; Rotter, Jerome, I; Wilson, James G.; Psaty, Bruce M.; Fornage, Myriam; Morrison, Alanna C.; Vasan, Ramachandran S.; Washko, George; Rich, Stephen S.; O'Connor, George T.; Bleecker, Eugene; Kaplan, Robert C.; Kalhan, Ravi; Redline, Susan; Gharib, Sina A.; Meyers, Deborah; Ortega, Victor; Dupuis, Josee; London, Stephanie J.; Lappalainen, Tuuli; Oelsner, Elizabeth C.; Silverman, Edwin K.; Barr, R. Graham; Thornton, Timothy A.; Wheeler, Heather E.; Cho, Michael H.; Im, Hae Kyung; Manichaikul, Ani Share Save
Implementation of preemptive DNA sequence-based pharmacogenomics testing across a large academic medical center: The Mayo-Baylor RIGHT 10K Study Wang, Liewei; Scherer, Steven E.; Bielinski, Suzette J.; Muzny, Donna M.; Jones, Leila A.; Black, John Logan; Moyer, Ann M.; Giri, Jyothsna; Sharp, Richard R.; Matey, Eric T.; Wright, Jessica A.; Oyen, Lance J.; Nicholson, Wayne T.; Wiepert, Mathieu; Sullard, Terri; Curry, Timothy B.; Vitek, Carolyn R. Rohrer; McAllister, Tammy M.; St Sauver, Jennifer L.; Caraballo, Pedro J.; Lazaridis, Konstantinos N.; Venner, Eric; Qin, Xiang; Hu, Jianhong; Kovar, Christie L.; Korchina, Viktoriya; Walker, Kimberly; Doddapaneni, HarshaVardhan; Wu, Tsung-Jung; Raj, Ritika; Denson, Shawn; Liu, Wen; Chandanavelli, Gauthami; Zhang, Lan; Wang, Qiaoyan; Kalra, Divya; Karow, Mary Beth; Harris, Kimberley J.; Sicotte, Hugues; Peterson, Sandra E.; Barthel, Amy E.; Moore, Brenda E.; Skierka, Jennifer M.; Kluge, Michelle L.; Kotzer, Katrina E.; Kloke, Karen; Vander Pol, Jessica M.; Marker, Heather; Sutton, Joseph A.; Kekic, Adrijana; Ebenhoh, Ashley; Bierle, Dennis M.; Schuh, Michael J.; Grilli, Christopher; Erickson, Sara; Umbreit, Audrey; Ward, Leah; Crosby, Sheena; Nelson, Eric A.; Levey, Sharon; Elliott, Michelle; Peters, Steve G.; Pereira, Naveen; Frye, Mark; Shamoun, Fadi; Goetz, Matthew P.; Kullo, Iftikhar J.; Wermers, Robert; Anderson, Jan A.; Formea, Christine M.; El Melik, Razan M.; Zeuli, John D.; Herges, Joseph R.; Krieger, Carrie A.; Hoel, Robert W.; Taraba, Jodi L.; St Thomas, Scott R.; Absah, Imad; Bernard, Matthew E.; Fink, Stephanie R.; Gossard, Andrea; Grubbs, Pamela L.; Jacobson, Therese M.; Takahashi, Paul; Zehe, Sharon C.; Buckles, Susan; Bumgardner, Michelle; Gallagher, Colette; Fee-Schroeder, Kelliann; Nicholas, Nichole R.; Powers, Melody L.; Ragab, Ahmed K.; Richardson, Darcy M.; Stai, Anthony; Wilson, Jaymi; Pacyna, Joel E.; Olson, Janet E.; Sutton, Erica J.; Beck, Annika T.; Horrow, Caroline; Kalari, Krishna R.; Larson, Nicholas B.; Liu, Hongfang; Wang, Liwei; Lopes, Guilherme S.; Borah, Bijan J.; Freimuth, Robert R.; Zhu, Ye; Jacobson, Debra J.; Hathcock, Matthew A.; Armasu, Sebastian M.; McGree, Michaela E.; Jiang, Ruoxiang; Koep, Tyler H.; Ross, Jason L.; Hilden, Matthew G.; Bosse, Kathleen; Ramey, Bronwyn; Searcy, Isabelle; Boerwinkle, Eric; Gibbs, Richard A.; Weinshilboum, Richard M. Share Save
Multiple Respiratory Syncytial Virus (RSV) Strains Infecting HEp-2 and A549 Cells Reveal Cell Line-Dependent Differences in Resistance to RSV Infection Rajan, Anubama; Piedra, Felipe-Andres; Aideyan, Letisha; McBride, Trevor; Robertson, Matthew; Johnson, Hannah L.; Aloisio, Gina Marie; Henke, David; Coarfa, Cristian; Stossi, Fabio; Menon, Vipin Kumar; Doddapaneni, Harshavardhan; Muzny, Donna Marie; Cregeen, Sara Joan Javornik; Hoffman, Kristi Louise; Petrosino, Joseph; Gibbs, Richard A.; Avadhanula, Vasanthi; Piedra, Pedro A. Share Save
Primary Infection May Be an Underlying Factor Contributing to Lethal Hemorrhagic Disease Caused by Elephant Endotheliotropic Herpesvirus 3 in African Elephants (Loxodonta africana) Pursell, Taylor; Clinton, Jennifer L. Spencer; Tan, Jie; Peng, Rongsheng; Qin, Xiang; Doddapaneni, Harshavardhan; Menon, Vipin; Momin, Zeineen; Kottapalli, Kavya; Howard, Lauren; Latimer, Erin; Heaggans, Sarah; Hayward, Gary S.; Ling, Paul D. Share Save
Transcriptional Reprogramming Differentiates Active from Inactive ESR1 Fusions in Endocrine Therapy-Refractory Metastatic Breast Cancer Gou, Xuxu; Anurag, Meenakshi; Lei, Jonathan T.; Kim, Beom-Jun; Singh, Purba; Seker, Sinem; Fandino, Diana; Han, Airi; Rehman, Saif; Hu, Jianhong; Korchina, Viktoriya; Doddapaneni, Harshavardhan; Dobrolecki, Lacey E.; Mitsiades, Nicholas; Lewis, Michael T.; Welm, Alana L.; Li, Shunqiang; Lee, Adrian, V; Robinson, Dan R.; Foulds, Charles E.; Ellis, Matthew J. Share Save
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Sequencing of a central nervous system tumor demonstrates cancer transmission in an organ transplant Gingras, Marie-Claude; Sabo, Aniko; Cardenas, Maria; Rana, Abbas; Dhingra, Sadhna; Meng, Qingchang; Hu, Jianhong; Muzny, Donna M.; Doddapaneni, Harshavardhan; Perez, Lesette; Korchina, Viktoriya; Nessner, Caitlin; Liu, Xiuping; Chao, Hsu; Goss, John; Gibbs, Richard A. Share Save
Whole genome sequence analysis of pulmonary function and COPD in 19,996 multi-ethnic participants Zhao, Xutong; Qiao, Dandi; Yang, Chaojie; Kasela, Silva; Kim, Wonji; Ma, Yanlin; Shrine, Nick; Batini, Chiara; Sofer, Tamar; Taliun, Sarah A. Gagliano; Sakornsakolpat, Phuwanat; Balte, Pallavi P.; Prokopenko, Dmitry; Yu, Bing; Lange, Leslie A.; Dupuis, Josee; Cade, Brian E.; Lee, Jiwon; Gharib, Sina A.; Daya, Michelle; Laurie, Cecelia A.; Ruczinski, Ingo; Cupples, L. Adrienne; Loehr, Laura R.; Bartz, Traci M.; Morrison, Alanna C.; Psaty, Bruce M.; Vasan, Ramachandran S.; Wilson, James G.; Taylor, Kent D.; Durda, Peter; Johnson, W. Craig; Cornell, Elaine; Guo, Xiuqing; Liu, Yongmei; Tracy, Russell P.; Ardlie, Kristin G.; Aguet, Francois; VanDenBerg, David J.; Papanicolaou, George J.; Rotter, Jerome I.; Barnes, Kathleen C.; Jain, Deepti; Nickerson, Deborah A.; Muzny, Donna M.; Metcalf, Ginger A.; Doddapaneni, Harshavardhan; Dugan-Perez, Shannon; Gupta, Namrata; Gabriel, Stacey; Rich, Stephen S.; O'Connor, George T.; Redline, Susan; Reed, Robert M.; Laurie, Cathy C.; Daviglus, Martha L.; Preudhomme, Liana K.; Burkart, Kristin M.; Kaplan, Robert C.; Wain, Louise V.; Tobin, Martin D.; London, Stephanie J.; Lappalainen, Tuuli; Oelsner, Elizabeth C.; Abecasis, Goncalo R.; Silverman, Edwin K.; Barr, R. Graham; Cho, Michael H.; Manichaikul, Ani Share Save
Paternal age in rhesus macaques is positively associated with germline mutation accumulation but not with measures of offspring sociability Wang, Richard J.; Thomas, Gregg W. C.; Raveendran, Muthuswamy; Harris, R. Alan; Doddapaneni, Harshavardhan; Muzny, Donna M.; Capitanio, John P.; Radivojac, Predrag; Rogers, Jeffrey; Hahn, Matthew W. Share Save
Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera Oeyen, Jan Philip; Baa-Puyoulet, Patrice; Benoit, Joshua B.; Beukeboom, Leo W.; Bornberg-Bauer, Erich; Buttstedt, Anja; Calevro, Federica; Cash, Elizabeth, I; Chao, Hsu; Charles, Hubert; Chen, Mei-Ju May; Childers, Christopher; Cridge, Andrew G.; Dearden, Peter; Huyen Dinh; Doddapaneni, Harsha Vardhan; Dolan, Amanda; Donath, Alexander; Dowling, Daniel; Dugan, Shannon; Duncan, Elizabeth; Elpidina, Elena N.; Friedrich, Markus; Geuverink, Elzemiek; Gibson, Joshua D.; Grath, Sonja; Grimmelikhuijzen, Cornelis J. P.; Grosse-Wilde, Ewald; Gudobba, Cameron; Han, Yi; Hansson, Bill S.; Hauser, Frank; Hughes, Daniel S. T.; Ioannidis, Panagiotis; Jacquin-Joly, Emmanuelle; Jennings, Emily C.; Jones, Jeffery W.; Klasberg, Steffen; Lee, Sandra L.; Lesny, Peter; Lovegrove, Mackenzie; Martin, Sebastian; Martynov, Alexander G.; Mayer, Christoph; Montagne, Nicolas; Moris, Victoria C.; Munoz-Torres, Monica; Murali, Shwetha Canchi; Muzny, Donna M.; Oppert, Brenda; Parisot, Nicolas; Pauli, Thomas; Peters, Ralph S.; Petersen, Malte; Pick, Christian; Persyn, Emma; Podsiadlowski, Lars; Poelchau, Monica F.; Provataris, Panagiotis; Qu, Jiaxin; Reijnders, Maarten J. M. F.; von Reumont, Bjoern Marcus; Rosendale, Andrew J.; Simao, Felipe A.; Skelly, John; Sotiropoulos, Alexandros G.; Stahl, Aaron L.; Sumitani, Megumi; Szuter, Elise M.; Tidswell, Olivia; Tsitlakidis, Evangelos; Vedder, Lucia; Waterhouse, Robert M.; Werren, John H.; Wilbrandt, Jeanne; Worley, Kim C.; Yamamoto, Daisuke S.; van de Zande, Louis; Zdobnov, Evgeny M.; Ziesmann, Tanja; Gibbs, Richard A.; Richards, Stephen; Hatakeyama, Masatsugu; Misof, Bernhard; Niehuis, Oliver Share Save
Brown marmorated stink bug, Halyomorpha halys (Stal), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest Sparks, Michael E.; Bansal, Raman; Benoit, Joshua B.; Blackburn, Michael B.; Chao, Hsu; Chen, Mengyao; Cheng, Sammy; Childers, Christopher; Dinh, Huyen; Doddapaneni, Harsha Vardhan; Dugan, Shannon; Elpidina, Elena N.; Farrow, David W.; Friedrich, Markus; Gibbs, Richard A.; Hall, Brantley; Han, Yi; Hardy, Richard W.; Holmes, Christopher J.; Hughes, Daniel S. T.; Ioannidis, Panagiotis; Jarvela, Alys M. Cheatle; Johnston, J. Spencer; Jones, Jeffery W.; Kronmiller, Brent A.; Kung, Faith; Lee, Sandra L.; Martynov, Alexander G.; Masterson, Patrick; Maumus, Florian; Munoz-Torres, Monica; Murali, Shwetha C.; Murphy, Terence D.; Muzny, Donna M.; Nelson, David R.; Oppert, Brenda; Panfilio, Kristen A.; Paula, Debora Pires; Pick, Leslie; Poelchau, Monica F.; Qu, Jiaxin; Reding, Katie; Rhoades, Joshua H.; Rhodes, Adelaide; Richards, Stephen; Richter, Rose; Robertson, Hugh M.; Rosendale, Andrew J.; Tu, Zhijian Jake; Velamuri, Arun S.; Waterhouse, Robert M.; Weirauch, Matthew T.; Wells, Jackson T.; Werren, John H.; Worley, Kim C.; Zdobnov, Evgeny M.; Gundersen-Rindal, Dawn E. Share Save
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