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Analytical Validation of an Early Detection Pancreatic Cancer Test Using 5-Hydroxymethylation Signatures Chowdhury, Shimul; Kesling, Michael; Collins, Micah; Lopez, Vanessa; Xue, Yuan; Oliveira, Glenn; Friedl, Verena; Bergamaschi, Anna; Haan, David; Volkmuth, Wayne; Levy, Samuel Share Save
Evaluation of the Avantect Pancreatic Cancer Test for identifying high-risk pancreatic cysts Bergamaschi, Anna; Haan, David; Friedl, Verena; Guler, Gulfem; Kesling, Michael; Collins, Micah; Hazen, Kyle; Lopez, Vanessa; Malta, Roger; Nabiyouni, Maryam; Riviere, Michael; Leighton, Anna; Peters, Melissa; Chowdhury, Shimul; Volkmuth, Wayne; Levy, Samuel Share Save
Epigenomic Blood-Based Early Detection of Pancreatic Cancer Employing Cell-Free DNA Haan, David; Bergamaschi, Anna; Friedl, Verena; Guler, Gulfem D.; Ning, Yuhong; Reggiardo, Roman; Kesling, Michael; Collins, Micah; Gibb, Bill; Hazen, Kyle; Bates, Steve; Antoine, Michael; Fraire, Carolina; Lopez, Vanessa; Malta, Roger; Nabiyouni, Maryam; Nguyen, Albert; Phillips, Tierney; Riviere, Michael; Leighton, Anna; Ellison, Christopher; McCarthy, Erin; Scott, Aaron; Gigliotti, Lauren; Nilson, Eric; Sheard, Judith; Peters, Melissa; Bethel, Kelly; Chowdhury, Shimul; Volkmuth, Wayne; Levy, Samuel Share Save
Implementation of the Avantect Pancreatic Cancer Test in Newly Diagnosed Type 2 Diabetes Patients in a Clinical Setting Chowdhury, Shimul; Vilalta, Adrian; Collins, Micah; Riviere, Michael; Lopez, Vanessa; Leighton, Anna; Antony, Marty; Nilson, Eric; Bergamaschi, Anna; Haan, David; Volkmuth, Wayne; Levy, Samuel Share Save
Pathway and network analysis of more than 2500 whole cancer genomes (vol 11, 729, 2020) Reyna, Matthew A.; Haan, David; Paczkowska, Marta; Verbeke, Lieven P. C.; Vazquez, Miguel; Kahraman, Abdullah; Pulido-Tamayo, Sergio; Barenboim, Jonathan; Wadi, Lina; Dhingra, Priyanka; Shrestha, Raunak; Getz, Gad; Lawrence, Michael S.; Pedersen, Jakob Skou; Rubin, Mark A.; Wheeler, David A.; Brunak, Sren; Izarzugaza, Jose M. G.; Khurana, Ekta; Marchal, Kathleen; von Mering, Christian; Sahinalp, S. Cenk; Valencia, Alfonso; Reimand, Jueri; Stuart, Joshua M.; Raphael, Benjamin J. Share Save
A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery Creason, Allison; Haan, David; Dang, Kristen; Chiotti, Kami E.; Inkman, Matthew; Lamb, Andrew; Yu, Thomas; Hu, Yin; Norman, Thea C.; Buchanan, Alex; van Baren, Marijke J.; Spangler, Ryan; Rollins, M. Rick; Spellman, Paul T.; Rozanov, Dmitri; Zhang, Jin; Maher, Christopher A.; Caloian, Cristian; Watson, John D.; Uhrig, Sebastian; Haas, Brian J.; Jain, Miten; Akeson, Mark; Ahsen, Mehmet Eren; Stolovitzky, Gustavo; Guinney, Justin; Boutros, Paul C.; Stuart, Joshua M.; Ellrott, Kyle Share Save
Whole-genome characterization of lung adenocarcinomas lacking the RTK/RAS/RAF pathway Carrot-Zhang, Jian; Yao, Xiaotong; Devarakonda, Siddhartha; Deshpande, Aditya; Damrauer, Jeffrey S.; Silva, Tiago Chedraoui; Wong, Christopher K.; Choi, Hyo Young; Felau, Ina; Robertson, A. Gordon; Castro, Mauro A. A.; Bao, Lisui; Rheinbay, Esther; Liu, Eric Minwei; Trieu, Tuan; Haan, David; Yau, Christina; Hinoue, Toshinori; Liu, Yuexin; Shapira, Ofer; Kumar, Kiran; Mungall, Karen L.; Zhang, Hailei; Lee, Jake June-Koo; Berger, Ashton; Gao, Galen F.; Zhitomirsky, Binyamin; Liang, Wen-Wei; Zhou, Meng; Moorthi, Sitapriya; Berger, Alice H.; Collisson, Eric A.; Zody, Michael C.; Ding, Li; Cherniack, Andrew D.; Getz, Gad; Elemento, Olivier; Benz, Christopher C.; Stuart, Josh; Zenklusen, J. C.; Beroukhim, Rameen; Chang, Jason C.; Campbell, Joshua D.; Hayes, D. Neil; Yang, Lixing; Laird, Peter W.; Weinstein, John N.; Kwiatkowski, David J.; Tsao, Ming S.; Travis, William D.; Khurana, Ekta; Berman, Benjamin P.; Hoadley, Katherine A.; Robine, Nicolas; Meyerson, Matthew; Govindan, Ramaswamy; Imielinski, Marcin Share Save
Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway (vol 34, 108707-1.e1, 2021) Carrot-Zhang, Jian; Yao, Xiaotong; Devarakonda, Siddhartha; Deshpande, Aditya; Damrauer, Jeffrey S.; Silva, Tiago Chedraoui; Wong, Christopher K.; Choi, Hyo Young; Felau, Ina; Robertson, A. Gordon; Castro, Mauro A. A.; Bao, Lisui; Rheinbay, Esther; Liu, Eric Minwei; Trieu, Tuan; Haan, David; Yau, Christina; Hinoue, Toshinori; Liu, Yuexin; Shapira, Ofer; Kumar, Kiran; Mungall, Karen L.; Zhang, Hailei; Lee, Jake June-Koo; Berger, Ashton; Gao, Galen F.; Zhitomirsky, Binyamin; Liang, Wen-Wei; Zhou, Meng; Moorthi, Sitapriya; Berger, Alice H.; Collisson, Eric A.; Zody, Michael C.; Ding, Li; Cherniack, Andrew D.; Getz, Gad; Elemento, Olivier; Benz, Christopher C.; Stuart, Josh; Zenklusen, J. C.; Beroukhim, Rameen; Chang, Jason C.; Campbell, Joshua D.; Hayes, D. Neil; Yang, Lixing; Laird, Peter W.; Weinstein, John N.; Kwiatkowski, David J.; Tsao, Ming S.; Travis, William D.; Khurana, Ekta; Berman, Benjamin P.; Hoadley, Katherine A.; Robine, Nicolas; Meyerson, Matthew; Govindan, Ramaswamy; Imielinski, Marcin Share Save
Epigenomic detection of multiple cancers in plasma derived cell free DNA Anna Bergamaschi, Anna; Ku, Jeremy; Ning, Yuhong; Collin, Francois; Ellison, Chris; Phillips, Tierney; McCarthy, Erin; Wang, Wendy; Antoine, Michael; Haan, David; Scott, Aaron; Lloyd, Paul; Guler, Gulfem; Ashworth, Alan; Quake, Stephen; Levy, Samuel Share Save
Pathway and network analysis of more than 2500 whole cancer genomes Reyna, Matthew A.; Haan, David; Paczkowska, Marta; Verbeke, Lieven P. C.; Vazquez, Miguel; Kahraman, Abdullah; Pulido-Tamayo, Sergio; Barenboim, Jonathan; Wadi, Lina; Dhingra, Priyanka; Shrestha, Raunak; Getz, Gad; Lawrence, Michael S.; Pedersen, Jakob Skou; Rubin, Mark A.; Wheeler, David A.; Brunak, Soren; Izarzugaza, Jose M. G.; Khurana, Ekta; Marchal, Kathleen; von Mering, Christian; Sahinalp, S. Cenk; Valencia, Alfonso; Reimand, Juri; Stuart, Joshua M.; Raphael, Benjamin J. Share Save
Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling Rice, Edward S.; Kohno, Satomi; St John, John; Pham, Son; Howard, Jonathan; Lareau, Liana F.; O'Connell, Brendan L.; Hickey, Glenn; Armstrong, Joel; Deran, Alden; Fiddes, Ian; Platt, Roy N., II; Gresham, Cathy; McCarthy, Fiona; Kern, Colin; Haan, David; Phan, Tan; Schmidt, Carl; Sanford, Jeremy R.; Ray, David A.; Paten, Benedict; Guillette, Louis J., Jr.; Green, Richard E. Share Save
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