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SaveDeciphering oncogenic dedifferentiation: A proteomic approach to quantifying stemness scores and unveiling druggable targets
Kolodziejczak-Guglas, Iga; Simoes, Renan; Demicco, Elizabeth G.; Segura, Rossana L.; Lazar, Alexander J.; Ma, Weiping; Storrs, Erik; Petralia, Francesca; Colaprico, Antonio; da Leprevost, Felipe; Pugliese, Pietro; Ceccarelli, Michele; Nesvizhski, Alexey I.; Kaminska, Bozena; Zhang, Bing; Rodriguez, Henry; Mesri, Mehdi; Robles, Ana I.; Ding, Li; Malta, Tathiane M.; Wiznerowicz, Maciej Share Save The immunopeptidome landscape associated with T cell infiltration, inflammation and immune editing in lung cancerKraemer, Anne I. .; Chong, Chloe; Huber, Florian; Pak, HuiSong; Stevenson, Brian J. J.; Mueller, Markus; Michaux, Justine; Altimiras, Emma Ricart; Rusakiewicz, Sylvie; Simo-Riudalbas, Laia; Planet, Evarist; Wiznerowicz, Maciej; Dagher, Julien; Trono, Didier; Coukos, George; Tissot, Stephanie; Bassani-Sternberg, Michal Share Save Proteomic-based stemness score measure oncogenic dedifferentiation and enable the identification of druggable targetsMalta, Tathiane M.; Kolodziejczak, Iga; Simoes, Renan; Colaprico, Antonio; Storrs, Erik; Petralia, Francesca; da von Leprevost, Felipe; Segura, Rossana L.; Demicco, Elizabeth; Lazar, Alexander J.; Ma, Weiping; Pugliese, Pietro; Ceccarelli, Michele; Kaminska, Bozena; Nesvizhski, Alexey I.; Zhang, Bing; Rodriguez, Henry; Mesri, Mehdi; Robles, Ana I.; Ding, Li; Wiznerowicz, Maciej Share Save Share Save Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomesChong, Chloe; Mueller, Markus; Pak, HuiSong; Harnett, Dermot; Huber, Florian; Grun, Delphine; Leleu, Marion; Auger, Aymeric; Arnaud, Marion; Stevenson, Brian J.; Michaux, Justine; Bilic, Ilija; Hirsekorn, Antje; Calviello, Lorenzo; Simo-Riudalbas, Laia; Planet, Evarist; Lubinski, Jan; Bryskiewicz, Marta; Wiznerowicz, Maciej; Xenarios, Ioannis; Zhang, Lin; Trono, Didier; Harari, Alexandre; Ohler, Uwe; Coukos, George; Bassani-Sternberg, Michal Share Save Share Save A Pan-Cancer Analysis Reveals High-Frequency Genetic Alterations in Mediators of Signaling by the TGF-β SuperfamilyKorkut, Anil; Zaidi, Sobia; Kanchi, Rupa S.; Rao, Shuyun; Gough, Nancy R.; Schultz, Andre; Li, Xubin; Lorenzi, Philip L.; Berger, Ashton C.; Robertson, Gordon; Kwong, Lawrence N.; Datto, Mike; Roszik, Jason; Ling, Shiyun; Ravikumar, Visweswaran; Manyam, Ganiraju; Rao, Arvind; Shelley, Simon; Liu, Yuexin; Ju, Zhenlin; Hansel, Donna; de Velasco, Guillermo; Pennathur, Arjun; Andersen, Jesper B.; O'Rourke, Colm J.; Ohshiro, Kazufumi; Jogunoori, Wilma; Bao-Ngoc Nguyen; Li, Shulin; Osmanbeyoglu, Hatice U.; Ajani, Jaffer A.; Mani, Sendurai A.; Houseman, Andres; Wiznerowicz, Maciej; Chen, Jian; Gu, Shoujun; Ma, Wencai; Zhang, Jiexin; Tong, Pan; Cherniack, Andrew D.; Deng, Chuxia; Resar, Linda; Weinstein, John N.; Mishra, Lopa; Akbani, Rehan Share Save Comprehensive analysis of cancer stemnessMalta, Tathiane M.; Sokolov, Artem; Gentles, Andrew J.; Burzykowski, Tomasz; Poisson, Laila; Weinstein, John; Kaminska, Bozena; Huelsken, Joerg; Omberg, Larsson; Gevaert, Olivier; Colaprico, Antonio; Czerwinska, Patrycja; Mazurek, Sylwia; Mishra, Lopa; Heyn, Holger; Krasnitz, Alex; Godwin, Andrew K.; Lazar, Alexander J.; Stuart, Joshua M.; Hoadley, Katherine; Laird, Peter W.; Noushmehr, Houtan; Wiznerowicz, Maciej Share Save A pan-cancer atlas of genomic, epigenomic and transcriptomic alterations in the TGF-β pathwayKorkut, Anil; Zaidi, Sobia; Kanchi, Rupa; Berger, Ashton C.; Robertson, Gordon; Kwong, Lawrence N.; Datto, Mike; Roszik, Jason; Ling, Shiyun; Schultz, Andre; Ravikumar, Visweswaran; Manyam, Ganiraju; Rao, Arvind; Shelley, Simon; Liu, Yuexin; Ju, Zhenlin; Hansel, Donna; de Velasco, Guillermo; Pennathur, Arjun; Andersen, Jesper B.; O'Rourke, Colm J.; Ohshiro, Kazufumi; Jogunoori, Wilma; Gough, Nancy; Li, Shulin; Osmanbeyoglu, Hatice; Houseman, Andres; Rao, Shuyun; Wiznerowicz, Maciej; Chen, Jian; Gu, Shoujun; Ma, Wencai; Zhang, Jiexin; Tong, Pan; Cherniack, Andrew D.; Deng, Chuxia; Resar-Smith, Linda; Ajani, Jaffer; Weinstein, John N.; Mishra, Lopa; Akbani, Rehan Share Save A Distinct DNA Methylation Shift in a Subset of Glioma CpG Island Methylator Phenotypes during Tumor Recurrencede Souza, Camila Ferreira; Sabedot, Thais S.; Malta, Tathiane M.; Stetson, Lindsay; Morozova, Olena; Sokolov, Artem; Laird, Peter W.; Wiznerowicz, Maciej; Iavarone, Antonio; Snyder, James; deCarvalho, Ana; Sanborn, Zachary; McDonald, Kerrie L.; Friedman, William A.; Tirapelli, Daniela; Poisson, Laila; Mikkelsen, Tom; Carlotti, Carlos G., Jr.; Kalkanis, Steven; Zenklusen, Jean; Salama, Sofie R.; Barnholtz-Sloan, Jill S.; Noushmehr, Houtan Share Save TRIM28 and Interacting KRAB-ZNFs Control Self-Renewal of Human Pluripotent Stem Cells through Epigenetic Repression of Pro-differentiation GenesOleksiewicz, Urszula; Gladych, Marta; Raman, Ayush T.; Heyn, Holger; Mereu, Elisabetta; Chlebanowska, Paula; Andrzejewska, Anastazja; Sozanska, Barbara; Samant, Neha; Fak, Katarzyna; Auguscik, Paulina; Kosinski, Marcin; Wroblewska, Joanna P.; Tomczak, Katarzyna; Kulcenty, Katarzyna; Ploski, Rafal; Biecek, Przemyslaw; Esteller, Manel; Shah, Parantu K.; Rai, Kunal; Wiznerowicz, Maciej Share Save Share Save Applying TCGA data for breast cancer diagnostics and pathway analysisAndersen, Jannik; Shah, Parantu; Ibbs, Matthew; Filas, Violetta; Korski, Konstanty; Marszalek, Andrzej; Wu, Yuanqing; Chang, Edward; Toniatti, Carlo; Draetta, Giulio; Wiznerowicz, Maciej Share Save Applying TCGA data for breast cancer diagnostics and pathway analysisAndersen, Jannik; Shah, Parantu; Korski, Konstanty; Ibbs, Matthew; Filas, Violetta; Kosiedowski, Michal; Pukacki, Juliusz; Mazurek, Cezary; Wu, Yuanqing; Chang, Edward; Toniatti, Carlo; Draetta, Giulio; Wiznerowicz, Maciej Share Save Long-term survival of high-risk melanoma patients immunized with a Hyper-IL-6-modified allogeneic whole-cell vaccine after complete resectionMackiewicz, Andrzej; Mackiewicz, Jacek; Wysocki, Piotr J.; Wiznerowicz, Maciej; Kapcinska, Malgorzata; Laciak, Maria; Rose-John, Stefan; Izycki, Dariusz; Burzykowski, Tomasz; Karczewska-Dzionk, Aldona Share Save Genetic and Pharmacological Inhibition of PDK1 in Cancer Cells CHARACTERIZATION OF A SELECTIVE ALLOSTERIC KINASE INHIBITORNagashima, Kumiko; Shumway, Stuart D.; Sathyanarayanan, Sriram; Chen, Albert H.; Dolinski, Brian; Xu, Youyuan; Keilhack, Heike; Thi Nguyen; Wiznerowicz, Maciej; Li, Lixia; Lutterbach, Bart A.; Chi, An; Paweletz, Cloud; Allison, Timothy; Yan, Youwei; Munshi, Sanjeev K.; Klippel, Anke; Kraus, Manfred; Bobkova, Ekaterina V.; Deshmukh, Sujal; Xu, Zangwei; Mueller, Uwe; Szewczak, Alexander A.; Pan, Bo-Sheng; Richon, Victoria; Pollock, Roy; Blume-Jensen, Peter; Northrup, Alan; Andersen, Jannik N. Share Save Inducible Gene and shRNA Expression in Resident Hematopoietic Stem Cells In VivoLaurenti, Elisa; Barde, Isabelle; Verp, Sonia; Offner, Sandra; Wilson, Anne; Quenneville, Simon; Wiznerowicz, Maciej; MacDonald, H. Robson; Trono, Didier; Trumpp, Andreas Share Save Genotypic features of lentivirus transgenic miceSauvain, Marc-Olivier; Dorr, Alexander P.; Stevenson, Brian; Quazzola, Alexandra; Naef, Felix; Wiznerowicz, Maciej; Schuetz, Frederic; Jongeneel, Victor; Duboule, Denis; Spitz, Francois; Trono, Didier Share Save Share Save 
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