Not logged in Immunotherapy response correlates in metastatic clear cell renal cell carcinoma from circulating cell-free epigenomes El Hajj Chehade, Razane; Semaan, Karl; Zhang, Ze; Phillips, Noa; Canniff, John; Savignano, Hunter; Nawfal, Rashad; Eid, Marc; Grisham, Lexi; Prather, Rebecca; Beckermann, Katy; Vaishampayan, Ulka; Haas, Naomi; Hammers, Hans; McDermott, David; Wood, Lauren; Solley, Travis; Rini, Brian; Jonasch, Eric; Choueiri, Toni K.; Freedman, Matthew L.; Haake, Scott M.; Baca, Sylvan C.; Berchuck, Jacob E. Share Save
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Increased nuclear factor I-mediated chromatin access drives transition to androgen receptor splice variant dependence in prostate cancer Poluben, Larysa; Nouri, Mannan; Liang, Jiaqian; Chen, Shaoyong; Varkaris, Andreas; Ersoy-Fazlioglu, Betul; Voznesensky, Olga; Lee, Irene I.; Qiu, Xintao; Cato, Laura; Seo, Ji-Heui; Freedman, Matthew L.; Sowalsky, Adam G.; Lack, Nathan A.; Corey, Eva; Nelson, Peter S.; Brown, Myles; Long, Henry W.; Russo, Joshua W.; Balk, Steven P. Share Save
Decoding the epigenetics and chromatin loop dynamics of androgen receptor-mediated transcription Altintas, Umut Berkay; Seo, Ji-Heui; Giambartolomei, Claudia; Ozturan, Dogancan; Fortunato, Brad J.; Nelson, Geoffrey M.; Goldman, Seth R.; Adelman, Karen; Hach, Faraz; Freedman, Matthew L.; Lack, Nathan A. Share Save
Frequent CHD1 deletions in prostate cancers of African American men is associated with rapid disease progression Diossy, Miklos; Tisza, Viktoria; Li, Hua; Sahgal, Pranshu; Zhou, Jia; Sztupinszki, Zsofia; Young, Denise; Nousome, Darryl; Kuo, Claire; Jiang, Jiji; Chen, Yongmei; Ebner, Reinhard; Sesterhenn, Isabell A.; Moncur, Joel T.; Chesnut, Gregory T.; Petrovics, Gyorgy; Klus, Gregory T.; Valcz, Gabor; Nuzzo, Pier Vitale; Ribli, Dezso; Boercsoek, Judit; Prosz, Aurel; Krzystanek, Marcin; Ried, Thomas; Szuts, David; Rizwan, Kinza; Kaochar, Salma; Pathania, Shailja; D'Andrea, Alan D.; Csabai, Istvan; Srivastava, Shiv; Freedman, Matthew L.; Dobi, Albert; Spisak, Sandor; Szallasi, Zoltan Share Save
Determination of tumor PSMA expression in prostate cancer from blood using a novel epigenomic liquid biopsy platform Ravi, P.; D'Ippolito, A.; Wurster, J.; Savignano, H.; Stoltenberg, H. A.; Trowbridge, R.; Borges, N.; Tamakloe, T.; Kieft, S.; Tran, V.; Guess, J.; Obrien, C.; Coyne, M.; Gorthi, A.; Painter, C.; Freedman, M.; Eaton, M.; Barrett, J. C.; Jacene, H.; Berchuck, J. E. Share Save
Detection and monitoring of translocation renal cell carcinoma via epigenomic profiling of cell-free DNA Garinet, S.; Semaan, K.; Canniff, J.; Phillips, N.; Davidsohn, M.; Berchuck, J. E.; Li, J.; Sadagopan, A.; Fortunato, B.; O'Toole, J.; Lee, G-S. M.; Horst, J. T.; Freeman, D.; Seo, J-H.; Freedman, M.; Choueiri, T. K.; Baca, S.; Viswanathan, S. Share Save
Epigenomic signatures of sarcomatoid differentiation to guide the treatment of renal cell carcinoma El Zarif, Talal; Semaan, Karl; Eid, Marc; Seo, Ji-Heui; Garinet, Simon; Davidsohn, Matthew P.; Sahgal, Pranshu; Fortunato, Brad; Canniff, John; Nassar, Amin H.; Alaiwi, Sarah Abou; Bakouny, Ziad; Lakshminarayanan, Gitanjali; Savignano, Hunter; Lyons, Kevin; Matar, Sayed; Ali, Atef; Saad, Eddy; Saliby, Renee Maria; Cordeiro, Paulo; Zhang, Ziwei; Ahmar, Nourhan El; Laimon, Yasmin Nabil; Labaki, Chris; Shah, Valisha; Freeman, Dory; O'Toole, Jillian; Lee, Gwo-Shu Mary; Hwang, Justin; Pomerantz, Mark; Signoretti, Sabina; Allen, Eliezer M. Van; Xie, Wanling; Berchuck, Jacob E.; Viswanathan, Srinivas R.; Braun, David A.; Choueiri, Toni K.; Freedman, Matthew L.; Baca, Sylvan C. Share Save
Liquid biopsy determination of HER2 status in breast cancer: results from a novel epigenomic platform Parsons, Heather; Baca, Sylvan; D'Ippolito, Anthony; Jeong, Hyun-Hwan; Smith, Kalie; Tarantino, Paolo; Hughes, Melissa; Sendrick, Kerry; Painter, Corrie; Seo, Ji-Heui; Grant, Elizabeth; Guess, Jamey; Davidsohn, Matthew; Lakshminarayanan, Gitanjali; Strauss, Sarah; Savignano, Hunter; Canniff, John; Fortunato, Brad; Eaton, Matthew; Choueiri, Toni; Tolaney, Sara; Freedman, Matthew; Lin, Nancy Share Save
Multi-ancestry genome-wide association study of kidney cancer identifies 63 susceptibility regions Purdue, Mark P.; Dutta, Diptavo; Machiela, Mitchell J.; Gorman, Bryan R.; Winter, Timothy; Okuhara, Dayne; Cleland, Sara; Ferreiro-Iglesias, Aida; Scheet, Paul; Liu, Aoxing; Wu, Chao; Antwi, Samuel O.; Larkin, James; Zequi, Stenio C.; Sun, Maxine; Hikino, Keiko; Hajiran, Ali; Lawson, Keith A.; Carcano, Flavio; Blanchet, Odile; Shuch, Brian; Nepple, Kenneth G.; Margue, Gaelle; Sundi, Debasish; Diver, W. Ryan; Folgueira, Maria A. A. K.; van Bokhoven, Adrie; Neffa, Florencia; Brown, Kevin M.; Hofmann, Jonathan N.; Rhee, Jongeun; Yeager, Meredith; Cole, Nathan R.; Hicks, Belynda D.; Manning, Michelle R.; Hutchinson, Amy A.; Rothman, Nathaniel; Huang, Wen-Yi; Linehan, W. Marston; Lori, Adriana; Ferragu, Matthieu; Zidane-Marinnes, Merzouka; Serrano, Sergio V.; Magnabosco, Wesley J.; Vilas, Ana; Decia, Ricardo; Carusso, Florencia; Graham, Laura S.; Anderson, Kyra; Bilen, Mehmet A.; Arciero, Cletus; Pellegrin, Isabelle; Ricard, Solene; Scelo, Ghislaine; Banks, Rosamonde E.; Vasudev, Naveen S.; Soomro, Naeem; Stewart, Grant D.; Adeyoju, Adebanji; Bromage, Stephen; Hrouda, David; Gibbons, Norma; Patel, Poulam; Sullivan, Mark; Protheroe, Andrew; Nugent, Francesca I.; Fournier, Michelle J.; Zhang, Xiaoyu; Martin, Lisa J.; Komisarenko, Maria; Eisen, Timothy; Cunningham, Sonia A.; Connolly, Denise C.; Uzzo, Robert G.; Zaridze, David; Mukeria, Anush; Holcatova, Ivana; Hornakova, Anna; Foretova, Lenka; Janout, Vladimir; Mates, Dana; Jinga, Viorel; Rascu, Stefan; Mijuskovic, Mirjana; Savic, Slavisa; Milosavljevic, Sasa; Gaborieau, Valerie; Abedi-Ardekani, Behnoush; Mckay, James; Johansson, Mattias; Phouthavongsy, Larry; Hayman, Lindsay; Li, Jason; Lungu, Ilinca; Bezerra, Stephania M.; Souza, Aline G.; Sares, Claudia T. G.; Reis, Rodolfo B.; Gallucci, Fabio P.; Cordeiro, Mauricio D.; Pomerantz, Mark; Lee, Gwo-Shu M.; Freedman, Matthew L.; Jeong, Anhyo; Greenberg, Samantha E.; Sanchez, Alejandro; Thompson, R. Houston; Sharma, Vidit; Thiel, David D.; Ball, Colleen T.; Abreu, Diego; Lam, Elaine T.; Nahas, William C.; Master, Viraj A.; Patel, Alpa V.; Bernhard, Jean-Christophe; Freedman, Neal D.; Bigot, Pierre; Reis, Rui M.; Colli, Leandro M.; Finelli, Antonio; Manley, Brandon J.; Terao, Chikashi; Choueiri, Toni K.; Carraro, Dirce M.; Houlston, Richard; Eckel-Passow, Jeanette E.; Abbosh, Philip H.; Ganna, Andrea; Brennan, Paul; Gu, Jian; Chanock, Stephen J. Share Save
Comprehensive epigenomic profiling from plasma to inform therapy selection: A proof-of-concept study in cancer Clark, Travis; Seo, Ji-Heui; D'Ippolito, Anthony; Gorthi, Aparna; Beagan, Jonathan; Guess, Jamey; Donahue, Amy; Greene, Mandy; Lau, Alyssa; Ramirez, Fernando; Cibulskis, Kristian; Jeong, Hyun-Hwan; Davidsohn, Matthew; Lakshminarayanam, Gitanjali; Coyne, Michael; Tran, Baovy; Tamakloe, Tyrone; Sawaengsri, Hathairat; Eid, Marc; Semaan, Karl; Fortunato, Brad; Painter, Corrie A.; Chmielecki, Juliann; Choueiri, Toni K.; Barrett, J. Carl; Otto, Geoff; Freedman, Matthew L.; Eaton, Matthew L.; Baca, Sylvan C. Share Save
KDM4C histone demethylase connects redox balance to chromatin remodeling via histone H3 tail clipping Li, Zheqi; Peluffo, Guillermo; Stevens, Laura; Qiu, Xintao; Seehawer, Marco; Huang, Xiao-Yun; Egri, Shawn; Papanastasiou, Malvina; Kingston, Natalie; D'Santos, Clive; Papachristou, Eva; Nishida, Jun; Evans, Kyle; Seo, Ji-Heui; Clement, Kendell; Temko, Daniel; Ekram, Muhammad; Rees, Matthew; Ronan, Melissa; Roth, Jennifer; Simeonov, Anton; Kales, Stephen; Rai, Ganesha; Lal-Nag, Madhu; Maloney, David; Jadhav, Ajit; Michor, Franziska; Meissner, Alex; Balko, Justin; Carroll, Jason; Freedman, Matthew; Long, Henry; Jaffe, Jacob; Polyak, Kornelia Share Save
The PENGUIN approach to reconstruct protein interactions at enhancer-promoter regions and its application to prostate cancer Armaos, Alexandros; Serra, Francois; Nunez-Carpintero, Iker; Seo, Ji-Heui; Baca, Sylvan C.; Gustincich, Stefano; Valencia, Alfonso; Freedman, Matthew L.; Cirillo, Davide; Giambartolomei, Claudia; Tartaglia, Gian Gaetano Share Save
Liquid biopsy epigenomic profiling for cancer subtyping (vol 29, pg 2737, 2023) Baca, Sylvan C.; Seo, Ji-Heui; Davidsohn, Matthew P.; Fortunato, Brad; Semaan, Karl; Sotudian, Shahabbedin; Lakshminarayanan, Gitanjali; Diossy, Miklos; Qiu, Xintao; El Zarif, Talal; Savignano, Hunter; Canniff, John; Madueke, Ikenna; Saliby, Renee Maria; Zhang, Ziwei; Li, Rong; Jiang, Yijia; Taing, Len; Awad, Mark; Chau, Cindy H.; Decaprio, James A.; Figg, William D.; Greten, Tim F.; Hata, Aaron N.; Hodi, F. Stephen; Hughes, Melissa E.; Ligon, Keith L.; Lin, Nancy; Ng, Kimmie; Oser, Matthew G.; Meador, Catherine; Parsons, Heather A.; Pomerantz, Mark M.; Rajan, Arun; Ritz, Jerome; Thakuria, Manisha; Tolaney, Sara M.; Wen, Patrick Y.; Long, Henry; Berchuck, Jacob E.; Szallasi, Zoltan; Choueiri, Toni K.; Freedman, Matthew L. Share Save
Grade Group 1 Prostate Cancers Exhibit Tumor-defining Androgen Receptor-driven Programs Linder, Simon; Severson, Tesa M.; van der Mijn, Koen J. C.; Nevedomskaya, Ekaterina; Siefert, Joseph C.; Stelloo, Suzan; Pomerantz, Mark M.; Freedman, Matthew L.; van der Poel, Henk; Jeronimo, Carmen; Henrique, Rui; Bergman, Andries M.; Zwart, Wilbert Share Save
Liquid biopsy epigenomic profiling for cancer subtyping Baca, Sylvan C.; Seo, Ji-Heui; Davidsohn, Matthew P.; Fortunato, Brad; Semaan, Karl; Sotudian, Shahabbedin; Lakshminarayanan, Gitanjali; Diossy, Miklos; Qiu, Xintao; El Zarif, Talal; Savignano, Hunter; Canniff, John; Madueke, Ikenna; Saliby, Renee Maria; Zhang, Ziwei; Li, Rong; Jiang, Yijia; Taing, Len; Awad, Mark; Chau, Cindy H.; Decaprio, James A.; Figg, William D.; Greten, Tim F.; Hata, Aaron N.; Hodi, F. Stephen; Hughes, Melissa E.; Ligon, Keith L.; Lin, Nancy; Ng, Kimmie; Oser, Matthew G.; Meador, Catherine; Parsons, Heather A.; Pomerantz, Mark M.; Rajan, Arun; Ritz, Jerome; Thakuria, Manisha; Tolaney, Sara M.; Wen, Patrick Y.; Long, Henry; Berchuck, Jacob E.; Szallasi, Zoltan; Choueiri, Toni K.; Freedman, Matthew L. Share Save
A biallelic multiple nucleotide length polymorphism explains functional causality at 5p15.33 prostate cancer risk locus (vol 14, 6623, 20230 Spisak, Sandor; Tisza, Viktoria; Nuzzo, Pier Vitale; Seo, Ji-Heui; Pataki, Balint; Ribli, Dezso; Sztupinszki, Zsofia; Bell, Connor; Rohanizadegan, Mersedeh; Stillman, David R.; Alaiwi, Sarah Abou; Bartels, Alan H.; Papp, Marton; Shetty, Anamay; Abbasi, Forough; Lin, Xianzhi; Lawrenson, Kate; Gayther, Simon A.; Pomerantz, Mark; Baca, Sylvan; Solymosi, Norbert; Csabai, Istvan; Szallasi, Zoltan; Gusev, Alexander; Freedman, Matthew L. Share Save
A biallelic multiple nucleotide length polymorphism explains functional causality at 5p15.33 prostate cancer risk locus Spisak, Sandor; Tisza, Viktoria; Nuzzo, Pier Vitale; Seo, Ji-Heui; Pataki, Balint; Ribli, Dezso; Sztupinszki, Zsofia; Bell, Connor; Rohanizadegan, Mersedeh; Stillman, David R.; Alaiwi, Sarah Abou; Bartels, Alan B.; Papp, Marton; Shetty, Anamay; Abbasi, Forough; Lin, Xianzhi; Lawrenson, Kate; Gayther, Simon A.; Pomerantz, Mark; Baca, Sylvan; Solymosi, Norbert; Csabai, Istvan; Szallasi, Zoltan; Gusev, Alexander; Freedman, Matthew L. Share Save
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