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Martin Karplus

Harvard University

167H-index
981Paper Count
15.5WCitation Count
Published Papers 204
Publication Date
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Computational Design and Expression of Headless Influenza Hemagglutinin Antigens Toward a Modular Universal Nanoparticle Vaccine
errAntibodies
IF2.7
err2026-07-29
err0
errOAAI
errVictor Ovchinnikov; Martin Karplus
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errSave
Phenomenological Modeling of Antibody Response from Vaccine Strain Composition
errANTIBODIES
IF2.7
err2025-01-16
err0
errOAAI
errOvchinnikov, Victor; Karplus, Martin
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errSave
High-throughput molecular simulations of SARS-CoV-2 receptor binding domain mutants quantify correlations between dynamic fluctuations and protein expression
errJOURNAL OF COMPUTATIONAL CHEMISTRY
IF4.8
err2024-10-15
err1
PREAI
errOvchinnikov, Victor; Karplus, Martin
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errSave
Water dynamics around T0 vs R4 of hemoglobin from local hydrophobicity analysis
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2023-01-10
err2
errOAAI
errSalehi, Seyedeh Maryam; Pezzella, Marco; Willard, Adam; Meuwly, Markus; Karplus, Martin
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ppdx: Automated modeling of protein-protein interaction descriptors for use with machine learning
errJOURNAL OF COMPUTATIONAL CHEMISTRY
IF4.8
err2022-08-05
err6
errOAAI
errConti, Simone; Ovchinnikov, Victor; Karplus, Martin
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The functional role of the hemoglobin-water interface
errMOLECULAR ASPECTS OF MEDICINE
IF10.3
err2022-04-01
err2
errOAAI
errMeuwly, Markus; Karplus, Martin
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errSave
A Coarse-Grained Model of Affinity Maturation Indicates the Importance of B-Cell Receptor Avidity in Epitope Subdominance
errFRONTIERS IN IMMUNOLOGY
IF5.9
err2022-03-18
err2
errOAAI
errOvchinnikov, Victor; Karplus, Martin
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errSave
Design of immunogens to elicit broadly neutralizing antibodies against HIV targeting the CD4 binding site
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2021-02-26
err7
errOAAI
errConti, Simone; Kaczorowski, Kevin J.; Song, Ge; Porter, Katelyn; Andrabi, Raiees; Burton, Dennis R.; Chakraborty, Arup K.; Karplus, Martin
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A restrained locally enhanced sampling method (RLES) for finding free energy minima in complex systems
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2020-09-24
err1
errOAAI
errOvchinnikov, Victor; Conti, Simone; Karplus, Martin
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The trajectory of intrahelical lesion recognition and extrusion by the human 8-oxoguanine DNA glycosylase
errNATURE COMMUNICATIONS
IF15.7
err2020-09-07
err25
errOAAI
errShigdel, Uddhav K.; Ovchinnikov, Victor; Lee, Seung-Joo; Shih, Jenny A.; Karplus, Martin; Nam, Kwangho; Verdine, Gregory L.
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Microsecond Molecular Dynamics Simulations of Proteins Using a Quasi-Equilibrium Solvation Shell Model
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2020-02-11
err7
PREAI
errOvchinnikov, Victor; Conti, Simone; Lau, Edmond Y.; Lightstone, Felice C.; Karplus, Martin
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errSave
Structural basis for power stroke vs. Brownian ratchet mechanisms of motor proteins
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2019-09-10
err93
errOAAI
errHwang, Wonmuk; Karplus, Martin
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errSave
Insights into the origin of the high energy-conversion efficiency of F1-ATPase
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2019-07-24
err12
errOAAI
errNam, Kwangho; Karplus, Martin
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errSave
Response to comment on 'Valid molecular dynamics simulations of human hemoglobin require a surprisingly large box size'
errELIFE
IF0
err2019-06-20
err14
errOAAI
errEl Hage, Krystel; Hedin, Florent; Gupta, Prashant K.; Meuwly, Markus; Karplus, Martin
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Structure of the EmrE multidrug transporter and its use for inhibitor peptide design
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2018-08-06
err40
errOAAI
errOvchinnikov, Victor; Stone, Tracy A.; Deber, Charles M.; Karplus, Martin
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Valid molecular dynamics simulations of human hemoglobin require a surprisingly large box size
errELIFE
IF0
err2018-07-12
err70
errOAAI
errEl Hage, Krystel; Hedin, Florent; Gupta, Prashant K.; Meuwly, Markus; Karplus, Martin
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errSave
Role of framework mutations and antibody flexibility in the evolution of broadly neutralizing antibodies
errELIFE
IF0
err2018-02-14
err78
errOAAI
errOvchinnikov, Victor; Louveau, Joy E.; Barton, John P.; Karplus, Martin; Chakraborty, Arup K.
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errSave
Kinesin motility is driven by subdomain dynamics
errELIFE
IF0
err2017-11-07
err40
errOAAI
errHwang, Wonmuk; Lang, Matthew J.; Karplus, Martin
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errSave
Exploratory search during directed navigation in C. elegans and Drosophila larva
errELIFE
IF0
err2017-10-30
err21
errOAAI
errKlein, Mason; Krivov, Sergei V.; Ferrer, Anggie J.; Luo, Linjiao; Samuel, Aravinthan D. T.; Karplus, Martin
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Trapping the ATP binding state leads to a detailed understanding of the F1-ATPase mechanism
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2014-12-01
err50
errOAAI
errNam, Kwangho; Pu, Jingzhi; Karplus, Martin
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errSave

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