Not logged in Three-dimensional genome landscape of primary human cancers Yost, Kathryn E.; Zhao, Yanding; Hung, King L.; Zhu, Kaiyuan; Xu, Duo; Corces, M. Ryan; Shams, Shadi; Louie, Bryan H.; Sarmashghi, Shahab; Sundaram, Laksshman; Luebeck, Jens; Clarke, Stanley; Doane, Ashley S.; Granja, Jeffrey M.; Choudhry, Hani; Imielinski, Marcin; Cherniack, Andrew D.; Khurana, Ekta; Bafna, Vineet; Felau, Ina; Zenklusen, Jean C.; Laird, Peter W.; Curtis, Christina; Greenleaf, William J.; Chang, Howard Y. Share Save
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Pan-cancer assessment of the impact of intronic variants on cancer development and progression Safonov, A.; Mehine, M.; Ceyhan-Birsoy, O.; Brown, D.; Bandlamudi, C.; Forbes, A.; Gazzo, A.; Selenica, P.; Shen, R.; Khurana, E.; Norton, L.; Solit, D.; Chandarlapaty, S.; Razavi, P.; Robson, M.; Weigelt, B.; Berger, M.; Ladanyi, M.; Reis-Filho, J. S.; Mandelker, D. Share Save
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Chromatin profiles classify castration-resistant prostate cancers suggesting therapeutic targets Tang, Fanying; Xu, Duo; Wang, Shangqian; Wong, Chen Khuan; Martinez-Fundichely, Alexander; Lee, Cindy J.; Cohen, Sandra; Park, Jane; Hill, Corinne E.; Eng, Kenneth; Bareja, Rohan; Han, Teng; Liu, Eric Minwei; Palladino, Ann; Di, Wei; Gao, Dong; Abida, Wassim; Beg, Shaham; Puca, Loredana; Meneses, Maximiliano; de Stanchina, Elisa; Berger, Michael F.; Gopalan, Anuradha; Dow, Lukas E.; Mosquera, Juan Miguel; Beltran, Himisha; Sternberg, Cora N.; Chi, Ping; Scher, Howard I.; Sboner, Andrea; Chen, Yu; Khurana, Ekta Share Save
Pathway and network analysis of more than 2500 whole cancer genomes (vol 11, 729, 2020) Reyna, Matthew A.; Haan, David; Paczkowska, Marta; Verbeke, Lieven P. C.; Vazquez, Miguel; Kahraman, Abdullah; Pulido-Tamayo, Sergio; Barenboim, Jonathan; Wadi, Lina; Dhingra, Priyanka; Shrestha, Raunak; Getz, Gad; Lawrence, Michael S.; Pedersen, Jakob Skou; Rubin, Mark A.; Wheeler, David A.; Brunak, Sren; Izarzugaza, Jose M. G.; Khurana, Ekta; Marchal, Kathleen; von Mering, Christian; Sahinalp, S. Cenk; Valencia, Alfonso; Reimand, Jueri; Stuart, Joshua M.; Raphael, Benjamin J. Share Save
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Tumor-intrinsic PRC2 inactivation drives a context- dependent immune-desert microenvironment and is sensitized by immunogenic viruses Yan, Juan; Chen, Yuedan; Patel, Amish J.; Warda, Sarah; Lee, Cindy J.; Nixon, Briana G.; Wong, Elissa W. P.; Miranda-Roman, Miguel A.; Yang, Ning; Wang, Yi; Pachai, Mohini R.; Sher, Jessica; Giff, Emily; Tang, Fanying; Khurana, Ekta; Singer, Sam; Liu, Yang; Galbo, Phillip M.; Maag, Jesper L. V.; Koche, Richard P.; Zheng, Deyou; Antonescu, Cristina R.; Deng, Liang; Li, Ming O.; Chen, Yu; Chi, Ping Share Save
Whole-genome characterization of lung adenocarcinomas lacking the RTK/RAS/RAF pathway Carrot-Zhang, Jian; Yao, Xiaotong; Devarakonda, Siddhartha; Deshpande, Aditya; Damrauer, Jeffrey S.; Silva, Tiago Chedraoui; Wong, Christopher K.; Choi, Hyo Young; Felau, Ina; Robertson, A. Gordon; Castro, Mauro A. A.; Bao, Lisui; Rheinbay, Esther; Liu, Eric Minwei; Trieu, Tuan; Haan, David; Yau, Christina; Hinoue, Toshinori; Liu, Yuexin; Shapira, Ofer; Kumar, Kiran; Mungall, Karen L.; Zhang, Hailei; Lee, Jake June-Koo; Berger, Ashton; Gao, Galen F.; Zhitomirsky, Binyamin; Liang, Wen-Wei; Zhou, Meng; Moorthi, Sitapriya; Berger, Alice H.; Collisson, Eric A.; Zody, Michael C.; Ding, Li; Cherniack, Andrew D.; Getz, Gad; Elemento, Olivier; Benz, Christopher C.; Stuart, Josh; Zenklusen, J. C.; Beroukhim, Rameen; Chang, Jason C.; Campbell, Joshua D.; Hayes, D. Neil; Yang, Lixing; Laird, Peter W.; Weinstein, John N.; Kwiatkowski, David J.; Tsao, Ming S.; Travis, William D.; Khurana, Ekta; Berman, Benjamin P.; Hoadley, Katherine A.; Robine, Nicolas; Meyerson, Matthew; Govindan, Ramaswamy; Imielinski, Marcin Share Save
Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway (vol 34, 108707-1.e1, 2021) Carrot-Zhang, Jian; Yao, Xiaotong; Devarakonda, Siddhartha; Deshpande, Aditya; Damrauer, Jeffrey S.; Silva, Tiago Chedraoui; Wong, Christopher K.; Choi, Hyo Young; Felau, Ina; Robertson, A. Gordon; Castro, Mauro A. A.; Bao, Lisui; Rheinbay, Esther; Liu, Eric Minwei; Trieu, Tuan; Haan, David; Yau, Christina; Hinoue, Toshinori; Liu, Yuexin; Shapira, Ofer; Kumar, Kiran; Mungall, Karen L.; Zhang, Hailei; Lee, Jake June-Koo; Berger, Ashton; Gao, Galen F.; Zhitomirsky, Binyamin; Liang, Wen-Wei; Zhou, Meng; Moorthi, Sitapriya; Berger, Alice H.; Collisson, Eric A.; Zody, Michael C.; Ding, Li; Cherniack, Andrew D.; Getz, Gad; Elemento, Olivier; Benz, Christopher C.; Stuart, Josh; Zenklusen, J. C.; Beroukhim, Rameen; Chang, Jason C.; Campbell, Joshua D.; Hayes, D. Neil; Yang, Lixing; Laird, Peter W.; Weinstein, John N.; Kwiatkowski, David J.; Tsao, Ming S.; Travis, William D.; Khurana, Ekta; Berman, Benjamin P.; Hoadley, Katherine A.; Robine, Nicolas; Meyerson, Matthew; Govindan, Ramaswamy; Imielinski, Marcin Share Save
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Lineage Reversion Drives WNT Independence in Intestinal Cancer Han, Teng; Goswami, Sukanya; Hu, Yang; Tang, Fanying; Zafra, Maria Paz; Murphy, Charles; Cao, Zhen; Poirier, John T.; Khurana, Ekta; Elemento, Olivier; Hechtman, Jaclyn F.; Ganesh, Karuna; Yaeger, Rona; Dow, Lukas E. Share Save
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Chromatin accessibility landscape and transcriptome of castration resistant prostate cancers reveals novel subtypes and diverse master regulators Tang, Fanying; Wong, Chen Khuan; Cohen, Sandra; Lee, Cindy; Liu, Minwei; Bareja, Rohan; Eng, Kenneth; Beg, Shaham; Puca, Loredana; Sternberg, Cora; Mosquera, Juan Miguel; Beltran, Himisha; Sboner, Andrea; Chen, Yu; Khurana, Ekta Share Save
Whole-genome characterization of lung adenocarcinomas lacking alterations in RTK/RAS/RAF/MAPK pathway Carrot-Zhang, Jian; Devarakonda, Siddhartha; Robine, Nicolas; Yao, Xiaotong; Silva, Tiago C.; Damrauer, Jeff; Deshpande, Aditya; Tsao, Ming-Sound; Yao, Christina; Wong, Chris; Bao, Lisui; Choi, Hyo Young; Felau, Ina; Zenklusen, Jean C.; Robertson, Gordon; Trieua, Tuan; Liang, Wei-Wei; Zhou, Meng; Rheinbay, Esther; Hayes, Neil; Khurana, Ekta; Ding, Li; Laird, Peter; Elemento, Olivier; Weinstein, John; Kwiatkowski, David; Benz, Chris; Stuart, Josh; Yang, Lixing; Castro, Mauro; Travis, William; Hoadley, Katherine; Berman, Ben; Meyerson, Matthew; Govindan, Ramaswamy; Imielinski, Marcin Share Save
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Pathway and network analysis of more than 2500 whole cancer genomes Reyna, Matthew A.; Haan, David; Paczkowska, Marta; Verbeke, Lieven P. C.; Vazquez, Miguel; Kahraman, Abdullah; Pulido-Tamayo, Sergio; Barenboim, Jonathan; Wadi, Lina; Dhingra, Priyanka; Shrestha, Raunak; Getz, Gad; Lawrence, Michael S.; Pedersen, Jakob Skou; Rubin, Mark A.; Wheeler, David A.; Brunak, Soren; Izarzugaza, Jose M. G.; Khurana, Ekta; Marchal, Kathleen; von Mering, Christian; Sahinalp, S. Cenk; Valencia, Alfonso; Reimand, Juri; Stuart, Joshua M.; Raphael, Benjamin J. Share Save
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