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Anna Lipzen

lawrence berkeley national laboratory

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3Paper Count
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Published Papers 46
Publication Date
Global population structures and demographic history of Suillus luteus, a pine co-introduced ectomycorrhizal fungus associated with exotic forestry and invasion
err2026-07-29
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errYi-Hong Ke; Anna Bazzicalupo; Joske Ruytinx; Lotus Lofgren; Thomas Bruns; Sara Branco; Brian Looney; Dai Hirose; Leho Tedersoo; Ursula Peintner; J. Alejandro Rojas; Hui-Ling Liao; Jonathan M. Plett; Ian C. Anderson; Anna Lipzen; Alan Kuo; Kerrie Barry; Igor Grigoriev; Jason D. Hoeksema; Peter G. Kennedy; Nhu H. Nguyen; Rytas Vilgalys
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Structure and sequence evolution in the pennycress (Thlaspi arvense) pangenome
err2026-04-02
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errKevin A. Bird; Joanna L. Rifkin; Chloee M. McLaughlin; Avril M. Harder; Pawan Basnet; Ella Katz; Tomáš Brůna; Kerrie Barry; LoriBeth Boston; Christopher Daum; Jie Guo; Anna Lipzen; Christopher Plott; Jerry W. Jenkins; Rachel Walstead; Shanmugam Rajasekar; Jayson Talag; Katherine Frels; Kathleen Greenham; Shelby Ellison; Jane Grimwood; Jeremy Schmutz; Patrick P. Edger; J. Chris Pires; John T. Lovell; Daniel J. Kliebenstein
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Pangeneric analyses reveal the divergent genome evolution and ecologies between morels and truffles in the Morchellaceae
err2025-08-05
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PREAI
errGregory Bonito; Shingo Miyauchi; Richard D. Hayes; Hao Tan; Alan Kuo; Aaron Robinson; Xinxin Wang; Jud Van Wyk; Annegret Kohler; Laure Fauchery; Elodie Drula; Gian Maria Niccolò Benucci; Emmanuelle Morin; Martin Ryberg; Faheema Kalsoom Khan; Melissa Cravero; Reid Longley; Kerrie Barry; Alicia Clum; Kecia Duffy; Anna Lipzen; Kurt LaButti; Robert Riley; Vasanth Singan; Andrei Steindorff; Jie Wang; Tom Bruns; Sundy Maurice; Philippe Clowez; Saskia Bindschedler; Pilar Junier; Patrick Chain; Igor V. Grigoriev; Francis M. Martin
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A Comparison of the Biotechnological Potential of Marine and Terrestrial Species of Two Orders of Sordariomycete Fungi
err2025-06-25
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PREAI
errRaquel Ledo Doval; Astrid Müller; Daren W. Brown; Derek Johnson; C. Alisha Quandt; Kerrie Barry; Alicia Clum; Hope Hundley; Kurt LaButti; Anna Lipzen; Stephen J. Mondo; Robin A. Ohm; Jasmyn L. Pangilinan; Robert W. Riley; Andrei S. Steindorff; Mei Wang; Elodie Drula; Bernard Henrissat; Kathryn Bushley; Joseph W. Spatafora; Mao Peng; Igor V. Grigoriev; Ronald P. de Vries
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Scaffolded and annotated nuclear and organelle genomes of the North American brown alga Saccharina latissima
err2025-05-14
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errDeWeese, Kelly; Molano, Gary; Calhoun, Sara; Lipzen, Anna; Jenkins, Jerry; Williams, Melissa; Plott, Christopher; Talag, Jayson; Grimwood, Jane; Jannink, Jean-Luc; Grigoriev, Igor V.; Schmutz, Jeremy; Yarish, Charles; Nuzhdin, Sergey; Lindell, Scott
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Morphogenesis, starvation, and light responses in a mushroom-forming fungus revealed by long-read sequencing and extensive expression profiling
err2025-04-21
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errBotond Hegedüs; Neha Sahu; Balázs Bálint; Sajeet Haridas; Viktória Bense; Zsolt Merényi; Máté Virágh; Hongli Wu; Xiao-Bin Liu; Robert Riley; Anna Lipzen; Maxim Koriabine; Emily Savage; Jie Guo; Kerrie Barry; Vivian Ng; Péter Urbán; Attila Gyenesei; Michael Freitag; Igor V. Grigoriev; László G. Nagy
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Section-level genome sequencing and comparative genomics of Aspergillus sections Cavernicolus and Usti
err2025-01-01
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PREAI
errNybo, J. L.; Vesth, T. C.; Theobald, S.; Frisvad, J. C.; Larsen, T. O.; Kjaerboelling, I.; Rothschild-Mancinelli, K.; Lyhne, E. K.; Barry, K.; Clum, A.; Yoshinaga, Y.; Ledsgaard, L.; Daum, C.; Lipzen, A.; Kuo, A.; Riley, R.; Mondo, S.; Labutti, K.; Haridas, S.; Pangalinan, J.; Salamov, A. A.; Simmons, B. A.; Magnuson, J. K.; Chen, J.; Drula, E.; Henrissat, B.; Wiebenga, A.; Lubbers, R. J. M.; Muller, A.; Gomes, A. C. dos Santos; Makela, M. R.; Stajich, J. E.; Grigorie, I., V; Mortensen, U. H.; Andersen, M. R.
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Genome sequencing of Porostereum spadiceum to study the degradation of levofloxacin (vol 270, 115808, 2024)
err2024-06-01
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errBen Ayed, Amal; Akrout, Imen; Staita, Karima; Albert, Quentin; Greff, Stephane; Simmler, Charlotte; Ahrendt, Steven; LaButti, Kurt; Lipzen, Anna; He, Guifen; Savage, Emily; Armengaud, Jean; Kielbasa, Melodie; Navarro, David; Drula, Elodie; Turbe-Doan, Annick; Bertrand, Emmanuel; Lomascolo, Anne; Chaduli, Delphine; Faulds, Craig B.; Chamkha, Mohamed; Maalej, Amina; Barry, Kerrie; Grigoriev, Igor, V; Martin, Francis; Zouari-Mechichi, Hela; Sciara, Giuliano; Mechichi, Tahar; Record, Eric
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Genome sequencing of Porostereum spadiceum to study the degradation of levofloxacin
err2024-01-01
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errOAAI
errBen Ayed, Amal; Akrout, Imen; Staita, Karima; Albert, Quentin; Greff, Stephane; Simmler, Charlotte; Ahrendt, Steven; Labutti, Kurt; Lipzen, Anna; He, Guifen; Savage, Emily; Armengaud, Jean; Kielbasa, Melodie; Navarro, David; Drula, Elodie; Turbe-Doan, Annick; Bertrand, Emmanuel; Lomascolo, Anne; Chaduli, Delphine; Faulds, Craig B.; Chamkha, Mohamed; Maalej, Amina; Barry, Kerrie; Grigoriev, Igor, V; Martin, Francis; Zouari-Mechichi, Hela; Sciara, Giuliano; Mechichi, Tahar; Record, Eric
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Transcriptional response of the white-rot fungus Dichomitus squalens to polysaccharides reveals a co-expression network of plant biomass conversion related genes
err2024-01-01
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errRamos, Victor M. Gonzalez; Mueller, Astrid; Peng, Mao; Pawlowski, Megan; Lipzen, Anna; Ng, Vivian; Singan, Vasanth; Wang, Mei; de Vries, Ronald P.; Grigoriev, Igor V.; Kowalczyk, Joanna E.; Makela, Miia R.
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In silico analysis of the expression profile of AA9 Lytic Polysaccharide Monooxygenases (LPMOs) and the CDH Cellobiose Dehydrogenase enzyme in wood-degrader Agaricomycetes. The Pleurotus ostreatus case
err2024-01-01
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errJimenez, Idoia; Roscales, Gabriel; Garde, Edurne; Tomazeli, Emilia Chuina; Honda, Yoichi; Lipzen, Anna; Lail, Kathleen; Bauer, Diane; Barry, Kerrie; Grigoriev, Igor V.; Ramirez, Lucia
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IMA genome-F18: The re-identification of Penicillium genomes available in NCBI and draft genomes for Penicillium species from dry cured meat, Penicilliumbiforme, P. brevicompactum, P. solitum, and P. cvjetkovicii, Pewenomyces kutranfy, Pew. lalenivora, Pew. tapulicola, Pew. kalosus, Teratosphaeria carnegiei, and Trichoderma atroviride SC1
err2023-10-06
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errVisagie, Cobus M.; Magista, Donato; Ferrara, Massimo; Balocchi, Felipe; Duong, Tuan A.; Eichmeier, Ales; Gramaje, David; Aylward, Janneke; Baker, Scott E.; Barnes, Irene; Calhoun, Sara; De Angelis, Maria; Frisvad, Jens C.; Hakalova, Eliska; Hayes, Richard D.; Houbraken, Jos; Grigoriev, Igor V.; Labutti, Kurt; Leal, Catarina; Lipzen, Anna; Ng, Vivian; Pangilinan, Jasmyn; Pecenka, Jakub; Perrone, Giancarlo; Piso, Anja; Savage, Emily; Spetik, Milan; Wingfield, Michael J.; Zhang, Yu; Wingfield, Brenda D.
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A scaffolded and annotated reference genome of giant kelp (Macrocystis pyrifera)
err2023-09-13
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errDiesel, Jose; Molano, Gary; Montecinos, Gabriel J.; Deweese, Kelly; Calhoun, Sara; Kuo, Alan; Lipzen, Anna; Salamov, Asaf; Grigoriev, Igor V.; Reed, Daniel C.; Miller, Robert J.; Nuzhdin, Sergey V.; Alberto, Filipe
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Symbiotic nitrogen fixation in the reproductive structures of a basidiomycete fungus
err2021-09-01
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PREAI
errKoch, Rachel A.; Yoon, Gyeong Mee; Aryal, Uma K.; Lail, Kathleen; Amirebrahimi, Mojgan; LaButti, Kurt; Lipzen, Anna; Riley, Robert; Barry, Kerrie; Henrissat, Bernard; Grigoriev, Igor, V; Herr, Joshua R.; Aime, M. Catherine
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Omics analyses and biochemical study of Phlebiopsis gigantea elucidate its degradation strategy of wood extractives
err2021-06-15
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errIwata, Mana; Gutierrez, Ana; Marques, Gisela; Sabat, Grzegorz; Kersten, Philip J.; Cullen, Daniel; Bhatnagar, Jennifer M.; Yadav, Jagjit; Lipzen, Anna; Yoshinaga, Yuko; Sharma, Aditi; Adam, Catherine; Daum, Christopher; Ng, Vivian; Grigoriev, Igor V.; Hori, Chiaki
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Revisiting a 'simple' fungal metabolic pathway reveals redundancy, complexity and diversity
err2021-03-05
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errChroumpi, Tania; Peng, Mao; Aguilar-Pontes, Maria Victoria; Mueller, Astrid; Wang, Mei; Yan, Juying; Lipzen, Anna; Ng, Vivian; Grigoriev, Igor V.; Makela, Miia R.; deVries, Ronald P.
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Physiology of Highly Radioresistant Escherichia coli After Experimental Evolution for 100 Cycles of Selection (vol 11, 582590, 2020)
err2020-12-11
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errBruckbauer, Steven T.; Martin, Joel; Minkoff, Benjamin B.; Veling, Mike T.; Lancaster, Illissa; Liu, Jessica; Trimarco, Joseph D.; Bushnell, Brian; Lipzen, Anna; Wood, Elizabeth A.; Sussman, Michael R.; Pennacchio, Christa; Cox, Michael M.
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Genomic Analysis Enlightens Agaricales Lifestyle Evolution and Increasing Peroxidase Diversity
err2020-11-19
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errRuiz-Duenas, Francisco J.; Barrasa, Jose M.; Sanchez-Garcia, Marisol; Camarero, Susana; Miyauchi, Shingo; Serrano, Ana; Linde, Dolores; Babiker, Rashid; Drula, Elodie; Ayuso-Fernandez, Ivan; Pacheco, Remedios; Padilla, Guillermo; Ferreira, Patricia; Barriuso, Jorge; Kellner, Harald; Castanera, Raul; Alfaro, Manuel; Ramirez, Lucia; Pisabarro, Antonio G.; Riley, Robert; Kuo, Alan; Andreopoulos, William; LaButti, Kurt; Pangilinan, Jasmyn; Tritt, Andrew; Lipzen, Anna; He, Guifen; Yan, Mi; Ng, Vivian; Grigoriev, Igor, V; Cullen, Daniel; Martin, Francis; Rosso, Marie-Noelle; Henrissat, Bernard; Hibbett, David; Martinez, Angel T.
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Physiology of Highly RadioresistantEscherichia coliAfter Experimental Evolution for 100 Cycles of Selection
err2020-09-22
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errOAAI
errBruckbauer, Steven T.; Martin, Joel; Minkoff, Benjamin B.; Veling, Mike T.; Lancaster, Illissa; Liu, Jessica; Trimarco, Joseph D.; Bushnell, Brian; Lipzen, Anna; Wood, Elizabeth A.; Sussman, Michael R.; Pennacchio, Christa; Cox, Michael M.
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