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Nick V. Grishin

university of texas southwestern medical center

90H-index
587Paper Count
3.7WCitation Count
Published Papers 132
Publication Date
Exploring the Terra incognita of AI-based domain classifications
err2025-11-25
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PREAI
errJimin Pei; Antonina Andreeva; Tiago Grego; Sara Chuguransky; Beatriz Lázaro Pinto; Nicole Morvelli Flores; Typhaine Paysan-Lafosse; Richard Dustin Schaeffer; Alex Bateman; Qian Cong; Nick V. Grishin
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CASP16 Protein Monomer Structure Prediction Assessment
err2025-08-17
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errOAAI
errRongqing Yuan; Jing Zhang; Andriy Kryshtafovych; R. Dustin Schaeffer; Jian Zhou; Qian Cong; Nick V. Grishin
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The Pfam protein families database: embracing AI/ML
err2024-11-14
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errOAAI
errPaysan-Lafosse, Typhaine; Andreeva, Antonina; Blum, Matthias; Chuguransky, Sara Rocio; Grego, Tiago; Pinto, Beatriz Lazaro; Salazar, Gustavo A.; Bileschi, Maxwell L.; Llinares-Lopez, Felipe; Meng-Papaxanthos, Laetitia; Colwell, Lucy J.; Grishin, Nick, V; Schaeffer, R. Dustin; Clementel, Damiano; Tosatto, Silvio C. E.; Sonhammer, Erik; Wood, Valerie; Bateman, Alex
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Assessing predictions on fitness effects of missense variants in HMBS in CAGI6
err2024-08-07
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PREAI
errZhang, Jing; Kinch, Lisa; Katsonis, Panagiotis; Lichtarge, Olivier; Jagota, Milind; Song, Yun S.; Sun, Yuanfei; Shen, Yang; Kuru, Nurdan; Dereli, Onur; Adebali, Ogun; Alladin, Muttaqi Ahmad; Pal, Debnath; Capriotti, Emidio; Turina, Maria Paola; Savojardo, Castrense; Martelli, Pier Luigi; Babbi, Giulia; Casadio, Rita; Pucci, Fabrizio; Rooman, Marianne; Cia, Gabriel; Tsishyn, Matsvei; Strokach, Alexey; Hu, Zhiqiang; van Loggerenberg, Warren; Roth, Frederick P.; Radivojac, Predrag; Brenner, Steven E.; Cong, Qian; Grishin, Nick V.
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Structure classification of the proteins from Salmonella enterica pangenome revealed novel potential pathogenicity islands
err2024-05-28
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errOAAI
errMedvedev, Kirill E.; Zhang, Jing; Schaeffer, R. Dustin; Kinch, Lisa N.; Cong, Qian; Grishin, Nick V.
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Tryptophan fuels MYC-dependent liver tumorigenesis through indole 3-pyruvate synthesis
err2024-05-20
err5
errOAAI
errVenkateswaran, Niranjan; Garcia, Roy; Lafita-Navarro, M. Carmen; Hao, Yi-Heng; Perez-Castro, Lizbeth; Nogueira, Pedro A. S.; Solmonson, Ashley; Mender, Ilgen; Kilgore, Jessica A.; Fang, Shun; Brown, Isabella N.; Li, Li; Parks, Emily; dos Santos, Igor Lopes; Bhaskar, Mahima; Kim, Jiwoong; Jia, Yuemeng; Lemoff, Andrew; Grishin, Nick V.; Kinch, Lisa; Xu, Lin; Williams, Noelle S.; Shay, Jerry W.; Deberardinis, Ralph J.; Zhu, Hao; Conacci-Sorrell, Maralice
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Identification of FDA-approved drugs that induce heart regeneration in mammals
err2024-03-11
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PREAI
errAhmed, Mahmoud Salama; Nguyen, Ngoc Uyen Nhi; Nakada, Yuji; Hsu, Ching-Cheng; Farag, Ayman; Lam, Nicholas T.; Wang, Ping; Thet, Suwannee; Menendez-Montes, Ivan; Elhelaly, Waleed M.; Lou, Xi; Secco, Ilaria; Tomczyk, Mateusz; Zentilin, Lorena; Pei, Jimin; Cui, Miao; Dos Santos, Matthieu; Liu, Xiaoye; Liu, Yan; Zaha, David; Walcott, Gregory; Tomchick, Diana R.; Xing, Chao; Zhang, Cheng Cheng; Grishin, Nick V.; Giacca, Mauro; Zhang, Jianyi; Sadek, Hesham A.
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Insights into virulence: structure classification of the Vibrio parahaemolyticus RIMD mobilome
err2023-12-21
err4
errOAAI
errKinch, Lisa N.; Schaeffer, R. Dustin; Zhang, Jing; Cong, Qian; Orth, Kim; Grishin, Nick
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Pan-cancer structurome reveals overrepresentation of beta sandwiches and underrepresentation of alpha helical domains
err2023-07-25
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errOAAI
errMedvedev, Kirill E.; Schaeffer, R. Dustin; Chen, Kenneth S.; Grishin, Nick V.
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Assessing risk for butterflies in the context of climate change, demographic uncertainty, and heterogeneous data sources
err2023-07-12
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errOAAI
errForister, Matthew L.; Grames, Eliza M.; Halsch, Christopher A.; Burls, Kevin J.; Carroll, Cas F.; Bell, Katherine L.; Jahner, Joshua P.; Bradford, Taylor A.; Zhang, Jing; Cong, Qian; Grishin, Nick V.; Glassberg, Jeffrey; Shapiro, Arthur M.; Riecke, Thomas V.
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TMEM120A is a coenzyme A-binding membrane protein with structural similarities to ELOVL fatty acid elongase
err2021-08-10
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errOAAI
errXue, Jing; Han, Yan; Baniasadi, Hamid; Zeng, Weizhong; Pei, Jimin; Grishin, Nick, V; Wang, Junmei; Tu, Benjamin P.; Jiang, Youxing
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Completeness and Consistency in Structural Domain Classifications
err2021-06-08
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errOAAI
errSchaeffer, R. Dustin; Kinch, Lisa N.; Pei, Jimin; Medvedev, Kirill E.; Grishin, Nick, V
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A combined RAD-Seq and WGS approach reveals the genomic basis of yellow color variation in bumble bee Bombus terrestris
err2021-04-12
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errOAAI
errRahman, Sarthok Rasique; Cnaani, Jonathan; Kinch, Lisa N.; Grishin, Nick, V; Hines, Heather M.
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Role of Two Metacaspases in Development and Pathogenicity of the Rice Blast Fungus Magnaporthe oryzae
errMBIO
IF4.7
err2021-02-23
err16
errOAAI
errFernandez, Jessie; Lopez, Victor; Kinch, Lisa; Pfeifer, Mariel A.; Gray, Hillery; Garcia, Nalleli; Grishin, Nick, V; Khang, Chang-Hyun; Orth, Kim
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Manipulation of IRE1-Dependent MAPK Signaling by a Vibrio Agonist-Antagonist Effector Pair
err2021-02-23
err5
errOAAI
errDe Nisco, Nicole J.; Casey, Amanda K.; Kanchwala, Mohammed; Lafrance, Alexander E.; Coskun, Fatma S.; Kinch, Lisa N.; Grishin, Nick V.; Xing, Chao; Orth, Kim
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