Not logged inPipeline Olympics: continuable benchmarking of computational workflows for DNA methylation sequencing data against an experimental gold standard
Lin, Yu-Yu; Breuer, Kersten; Weichenhan, Dieter; Lafrenz, Pascal; Sarnataro, Antonella; Wilk, Agata; Chepeleva, Maryna; Mucke, Oliver; Schonung, Maximilian; Petermann, Franziska; Kensche, Philip Reiner; Weiser, Lena; Thommen, Frank; Giacomelli, Gideon; Nordstroem, Karl; Gonzalez-Avalos, Edahi; Merkel, Angelika; Kretzmer, Helene; Fischer, Jonas; Kramer, Stephen; Iskar, Murat; Wolf, Stephan; Buchhalter, Ivo; Esteller, Manel; Lawerenz, Christian; Twardziok, Sven; Zapatka, Marc; Hovestadt, Volker; Schlesner, Matthias; Schulz, Marcel H.; Hoffmann, Steve; Gerhauser, Clarissa; Walter, Jorn; Hartmann, Mark; Lipka, Daniel B.; Assenov, Yassen; Bock, Christoph; Plass, Christoph; Toth, Reka; Lutsik, Pavlo
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SaveDEVELOPMENT OF A FUNCTIONAL PLATFORM FOR REAL-TIME PERSONALIZED DRUG SENSITIVITY PROFILING OF PATIENT-DERIVED 3D FRESH TUMOR TISSUE CULTURES IN THE PEDIATRIC PRECISION ONCOLOGY PROGRAM INFORM
Peterziel, Heike; Jamaladdin, Nora; El Harouni, Dina; Gerloff, Xenia F.; Herter, Sonja; Fiesel, Petra; Berker, Yannick; Blattner-Johnson, Mirjam; Schramm, Kathrin; Jones, Barbara C.; Reuss, David; Turunen, Laura; Friedenauer, Aileen; Holland-Letz, Tim; Sill, Martin; Weiser, Lena; Previti, Christopher; Ubramanian, Gnanaprakash Balas; Gerber, Nicolas U.; Gojo, Johannes; Hutter, Caroline; Ora, Ingrid; Lohi, Olli; Kattamis, Antonis; De Wilde, Bram; Termann, Frank Wes; Tippelt, Stephan; Graf, Norbert; Nathrath, Michaela; Sparber-Sauer, Monika; Sehested, Astrid; Kramm, Christof M.; Dirksen, Uta; Kallioniemi, Olli; Pfister, Stefan M.; Van Tilburg, Cornelis M.; Jones, David T. W.; Saarela, Jani; Pietiainen, Vilja; Jager, Natalie; Schlesner, Matthias; Kopp-Schneider, Annette; Oppermann, Sina; Milde, Till; Witt, Olaf; Oehme, Ina
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SaveITCC-P4: Genomic profiling and analyses of pediatric patient tumor and patient-derived xenograft (PDX) models for high throughput in vivo testing
Gopisetty, Apurva; Federico, Aniello; Surdez, Didier; Iddir, Yasmine; Zaidi, Sakina; Saint-Charles, Alexandra; Waterfall, Joshua; Saberi-Ansari, Elnaz; Wierzbinska, Justyna; Schlicker, Andreas; Mack, Norman; Schwalm, Benjamin; Previti, Christopher; Weiser, Lena; Buchhalter, Ivo; Bottcher, Anna-Lisa; Sill, Martin; Autry, Robert; Estermann, Frank; Jones, David; Volckmann, Richard; Zwijnenburg, Danny; Eggert, Angelika; Heidenreich, Olaf; Iradier, Fatima; Jeremias, Irmela; Kovar, Heinrich; Klusmann, Jan-Henning; Debatin, Klaus-Michael; Bomken, Simon; Hamerlik, Petra; Hattersley, Maureen; Witt, Olaf; Chesler, Louis; Mackay, Alan; Gojo, Johannes; Cairo, Stefano; Schueler, Julia; Schulte, Johannes; Geoerger, Birgit; Molenaar, Jan J.; Shields, David J.; Caron, Hubert N.; Vassal, Gilles; Stancato, Louis F.; Pfister, Stefan M.; Jaeger, Natalie; Koster, Jan; Kool, Marcel; Schleiermacher, Gudrun
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SaveDrug sensitivity profiling of 3D tumor tissue cultures in the pediatric precision oncology program INFORM
Peterziel, Heike; Jamaladdin, Nora; ElHarouni, Dina; Gerloff, Xenia F.; Herter, Sonja; Fiesel, Petra; Berker, Yannick; Blattner-Johnson, Mirjam; Schramm, Kathrin; Jones, Barbara C.; Reuss, David; Turunen, Laura; Friedenauer, Aileen; Holland-Letz, Tim; Sill, Martin; Weiser, Lena; Previti, Christopher; Balasubramanian, Gnanaprakash; Gerber, Nicolas U.; Gojo, Johannes; Hutter, Caroline; Ora, Ingrid; Lohi, Olli; Kattamis, Antonis; de Wilde, Bram; Westermann, Frank; Tippelt, Stephan; Graf, Norbert; Nathrath, Michaela; Sparber-Sauer, Monika; Sehested, Astrid; Kramm, Christof M.; Dirksen, Uta; Kallioniemi, Olli; Pfister, Stefan M.; van Tilburg, Cornelis M.; Jones, David T. W.; Saarela, Jani; Pietiaeinen, Vilja; Jaeger, Natalie; Schlesner, Matthias; Kopp-Schneider, Annette; Oppermann, Sina; Milde, Till; Witt, Olaf; Oehme, Ina
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