Not logged in Pipeline Olympics: continuable benchmarking of computational workflows for DNA methylation sequencing data against an experimental gold standard Lin, Yu-Yu; Breuer, Kersten; Weichenhan, Dieter; Lafrenz, Pascal; Sarnataro, Antonella; Wilk, Agata; Chepeleva, Maryna; Mucke, Oliver; Schonung, Maximilian; Petermann, Franziska; Kensche, Philip Reiner; Weiser, Lena; Thommen, Frank; Giacomelli, Gideon; Nordstroem, Karl; Gonzalez-Avalos, Edahi; Merkel, Angelika; Kretzmer, Helene; Fischer, Jonas; Kramer, Stephen; Iskar, Murat; Wolf, Stephan; Buchhalter, Ivo; Esteller, Manel; Lawerenz, Christian; Twardziok, Sven; Zapatka, Marc; Hovestadt, Volker; Schlesner, Matthias; Schulz, Marcel H.; Hoffmann, Steve; Gerhauser, Clarissa; Walter, Jorn; Hartmann, Mark; Lipka, Daniel B.; Assenov, Yassen; Bock, Christoph; Plass, Christoph; Toth, Reka; Lutsik, Pavlo Share Save
Predictive value of DNA methylation patterns in AML patients treated with an azacytidine containing induction regimen Schmutz, Maximilian; Zucknick, Manuela; Schlenk, Richard F.; Mertens, Daniel; Benner, Axel; Weichenhan, Dieter; Muecke, Oliver; Doehner, Konstanze; Plass, Christoph; Bullinger, Lars; Claus, Rainer Share Save
DNMT and HDAC inhibition induces immunogenic neoantigens from human endogenous retroviral element-derived transcripts Goyal, Ashish; Bauer, Jens; Hey, Joschka; Papageorgiou, Dimitris N.; Stepanova, Ekaterina; Daskalakis, Michael; Scheid, Jonas; Dubbelaar, Marissa; Klimovich, Boris; Schwarz, Dominic; Maerklin, Melanie; Roerden, Malte; Lin, Yu-Yu; Ma, Tobias; Muecke, Oliver; Rammensee, Hans-Georg; Luebbert, Michael; Loayza-Puch, Fabricio; Krijgsveld, Jeroen; Walz, Juliane S.; Plass, Christoph Share Save
Global hypomethylation in childhood asthma identified by genome-wide DNA-methylation sequencing preferentially affects enhancer regions Thuermann, Loreen; Kloes, Matthias; Mackowiak, Sebastian D.; Bieg, Matthias; Bauer, Tobias; Ishaque, Naveed; Messingschlager, Marey; Herrmann, Carl; Roeder, Stefan; Bauer, Mario; Schaeuble, Sascha; Faessler, Erik; Hahn, Udo; Weichenhan, Dieter; Muecke, Oliver; Plass, Christoph; Borte, Michael; von Mutius, Erika; Stangl, Gabriele I.; Lauener, Roger; Karvonen, Anne M.; Divaret-Chauveau, Amandine; Riedler, Josef; Heinrich, Joachim; Standl, Marie; von Berg, Andrea; Schaaf, Beate; Herberth, Gunda; Kabesch, Michael; Eils, Roland; Trump, Saskia; Lehmann, Irina Share Save
TAL1 activation in T-cell acute lymphoblastic leukemia: a novel oncogenic 3' neo-enhancer Smith, Charlotte; Goyal, Ashish; Weichenhan, Dieter; Allemand, Eric; Mayakonda, Anand; Toprak, Umut; Riedel, Anna; Balducci, Estelle; Manojkumar, Manisha; Pejkovska, Anastasija; Muecke, Oliver; Sollier, Etienne; Bakr, Ali; Breuer, Kersten; Lutsik, Pavlo; Hermine, Olivier; Spicuglia, Salvatore; Asnafi, Vahid; Plass, Christoph; Touzart, Aurore Share Save
Longitudinal trends of serum IgE and IL5RA expression throughout childhood are associated with asthma but not with persistent wheeze Kloes, Matthias; Thuermann, Loreen; Bauer, Mario; Heinrich, Joachim; Standl, Marie; von Berg, Andrea; Schaaf, Beate; Weichenhan, Dieter; Muecke, Oliver; Plass, Christoph; Roeder, Stefan; Herberth, Gunda; Sack, Ulrich; Borte, Michael; Stangl, Gabriele I.; Eils, Roland; Trump, Saskia; Lehmann, Irina Share Save
Early-onset childhood atopic dermatitis is related to NLRP2 repression Thuermann, Loreen; Gruetzmann, Konrad; Kloes, Matthias; Bieg, Matthias; Winter, Marcus; Polte, Tobias; Bauer, Tobias; Schick, Matthias; Bewerunge-Hudler, Melanie; Roeder, Stefan; Bauer, Mario; Wissenbach, Dirk K.; Sack, Ulrich; Weichenhan, Dieter; Muecke, Oliver; Plass, Christoph; Borte, Michael; von Bergen, Martin; Lehmann, Irina; Eils, Roland; Trump, Saskia Share Save
Suppression of indoleamine-2,3-dioxygenase 1 expression by promoter hypermethylation in ER-positive breast cancer Dewi, Dyah L.; Mohapatra, Soumya R.; Cabanes, Saioa Blanco; Adam, Isabell; Patterson, Luis F. Somarribas; Berdel, Bianca; Kahloon, Masroor; Thuemann, Loreen; Loth, Stefanie; Heilmann, Katharina; Weichenhan, Dieter; Muecke, Oliver; Heiland, Ines; Wimberger, Pauline; Kuhlmann, Jan Dominik; Kellner, Karl-Heinz; Schott, Sarah; Plass, Christoph; Platten, Michael; Gerhaeuser, Clarissa; Trump, Saskia; Opitz, Christiane A. Share Save
Early Epigenetic Downregulation of microRNA-192 Expression Promotes Pancreatic Cancer Progression Botla, Sandeep K.; Savant, Soniya; Jandaghi, Pouria; Bauer, Andrea S.; Muecke, Oliver; Moskalev, Evgeny A.; Neoptolemos, John P.; Costello, Eithne; Greenhalf, William; Scarpa, Aldo; Gaida, Matthias M.; Buechler, Markus W.; Strobel, Oliver; Hackert, Thilo; Giese, Nathalia A.; Augustin, Hellmut G.; Hoheisel, Joerg D. Share Save
Prenatal maternal stress and wheeze in children: novel insights into epigenetic regulation Trump, Saskia; Bieg, Matthias; Gu, Zuguang; Thuermann, Loreen; Bauer, Tobias; Bauer, Mario; Ishaque, Naveed; Roeder, Stefan; Gu, Lei; Herberth, Gunda; Lawerenz, Christian; Borte, Michael; Schlesner, Matthias; Plass, Christoph; Diessl, Nicolle; Eszlinger, Markus; Muecke, Oliver; Elvers, Horst-Dietrich; Wissenbach, Dirk K.; von Bergen, Martin; Herrmann, Carl; Weichenhan, Dieter; Wright, Rosalind J.; Lehmann, Irina; Eils, Roland Share Save
CREBBP is a target of epigenetic, but not genetic, modification in juvenile myelomonocytic leukemia Fluhr, Silvia; Boerries, Melanie; Busch, Hauke; Symeonidi, Aikaterini; Witte, Tania; Lipka, Daniel B.; Muecke, Oliver; Noellke, Peter; Krombholz, Christopher Felix; Niemeyer, Charlotte M.; Plass, Christoph; Flotho, Christian Share Save
Environment-induced epigenetic reprogramming in genomic regulatory elements in smoking mothers and their children Bauer, Tobias; Trump, Saskia; Ishaque, Naveed; Thuermann, Loreen; Gu, Lei; Bauer, Mario; Bieg, Matthias; Gu, Zuguang; Weichenhan, Dieter; Mallm, Jan-Philipp; Roeder, Stefan; Herberth, Gunda; Takada, Eiko; Muecke, Oliver; Winter, Marcus; Junge, Kristin M.; Gruetzmann, Konrad; Rolle-Kampczyk, Ulrike; Wang, Qi; Lawerenz, Christian; Borte, Michael; Polte, Tobias; Schlesner, Matthias; Schanne, Michaela; Wiemann, Stefan; Geoerg, Christina; Stunnenberg, Hendrik G.; Plass, Christoph; Rippe, Karsten; Mizuguchi, Junichiro; Herrmann, Carl; Eils, Roland; Lehmann, Irina Share Save
Increased vitamin D levels at birth and in early infancy increase offspring allergy risk-evidence for involvement of epigenetic mechanisms Junge, Kristin M.; Bauer, Tobias; Geissler, Stefanie; Hirche, Frank; Thuermann, Loreen; Bauer, Mario; Trump, Saskia; Bieg, Matthias; Weichenhan, Dieter; Gu, Lei; Mallm, Jan-Philipp; Ishaque, Naveed; Muecke, Oliver; Roeder, Stefan; Herberth, Gunda; Diez, Ulrike; Borte, Michael; Rippe, Karsten; Plass, Christoph; Hermann, Carl; Stangl, Gabriele I.; Eils, Roland; Lehmann, Irina Share Save
Promoter DNA methylation regulates progranulin expression and is altered in FTLD Banzhaf-Strathmann, Julia; Claus, Rainer; Mucke, Oliver; Rentzsch, Kristin; van der Zee, Julie; Engelborghs, Sebastiaan; De Deyn, Peter P.; Cruts, Marc; van Broeckhoven, Christine; Plass, Christoph; Edbauer, Dieter Share Save
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