Alan McCulloch - Publications, H-index & Citations

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Alan McCulloch

agresearch - new zealand

18H-index

69Paper Count

899Citation Count

Published Papers 14

Publication Date

Large-scale analysis of sheep rumen metagenome profiles captured by reduced representation sequencing reveals individual profiles are influenced by the environment and genetics of the host

BMC GENOMICS

IF3.7

2023-09-18

OAAI

Hess, Melanie K.; Hodgkinson, Hannah E.; Hess, Andrew S.; Zetouni, Larissa; Budel, Juliana C. C.; Henry, Hannah; Donaldson, Alistair; Bilton, Timothy P.; van Stijn, Tracey C.; Kirk, Michelle R.; Dodds, Ken G.; Brauning, Rudiger; Mcculloch, Alan F.; Hickey, Sharon M.; Johnson, Patricia L.; Jonker, Arjan; Morton, Nickolas; Hendy, Shaun; Oddy, V. Hutton; Janssen, Peter H.; Mcewan, John C.; Rowe, Suzanne J.

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Combining host and rumen metagenome profiling for selection in sheep: prediction of methane, feed efficiency, production, and health traits

GENETICS SELECTION EVOLUTION

IF3.1

2023-07-25

OAAI

Hess, Melanie K.; Zetouni, Larissa; Hess, Andrew S.; Budel, Juliana; Dodds, Ken G.; Henry, Hannah M.; Brauning, Rudiger; McCulloch, Alan F.; Hickey, Sharon M.; Johnson, Patricia L.; Elmes, Sara; Wing, Janine; Bryson, Brooke; Knowler, Kevin; Hyndman, Dianne; Baird, Hayley; McRae, Kathryn M.; Jonker, Arjan; Janssen, Peter H.; McEwan, John C.; Rowe, Suzanne J.

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Effects of long-acting, broad spectra anthelmintic treatments on the rumen microbial community compositions of grazing sheep

SCIENTIFIC REPORTS

IF3.9

2021-02-15

OAAI

Moon, Christina D.; Carvalho, Luis; Kirk, Michelle R.; McCulloch, Alan F.; Kittelmann, Sandra; Young, Wayne; Janssen, Peter H.; Leathwick, Dave M.

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An entropy-reducing data representation approach for bioinformatic data

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2018-04-05

OAAI

McCulloch, Alan F.; Jauregui, Ruy; Maclean, Paul H.; Ashby, Rachael L.; Moraga, Roger A.; Laugraud, Aurelie; Brauning, Rudiger; Dodds, Ken G.; McEwan, John C.

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Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds

NATURE COMMUNICATIONS

IF15.7

2018-02-28

105

OAAI

Naval-Sanchez, Marina; Quan Nguyen; McWilliam, Sean; Porto-Neto, Laercio R.; Tellam, Ross; Vuocolo, Tony; Reverter, Antonio; Perez-Enciso, Miguel; Brauning, Rudiger; Clarke, Shannon; McCulloch, Alan; Zamani, Wahid; Naderi, Saeid; Rezaei, Hamid Reza; Pompanon, Francois; Taberlet, Pierre; Worley, Kim C.; Gibbs, Richard A.; Muzny, Donna M.; Jhangiani, Shalini N.; Cockett, Noelle; Daetwyler, Hans; Kijas, James

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GAMOLA2, a Comprehensive Software Package for the Annotation and Curation of Draft and Complete Microbial Genomes

FRONTIERS IN MICROBIOLOGY

IF4.5

2017-03-23

OAAI

Altermann, Eric; Lu, Jingli; McCulloch, Alan

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Buccal Swabbing as a Noninvasive Method To Determine Bacterial, Archaeal, and Eukaryotic Microbial Community Structures in the Rumen

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2015-11-01

OAAI

Kittelmann, Sandra; Kirk, Michelle R.; Jonker, Arjan; McCulloch, Alan; Janssen, Peter H.

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Proteomic analysis of a filamentous fungal endophyte using EST datasets

PROTEOMICS

IF3.9

2009-04-20

PREAI

Bassett, Shalome A.; Bond, Judy J.; Kwan, Fiona Y. S.; McCulloch, Alan F.; Haynes, Paul A.; Johnson, Richard D.; Bryan, Gregory T.; Jordan, T. William

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Mushroom intolerance: a novel diet-gene interaction in Crohn's disease

BRITISH JOURNAL OF NUTRITION

IF3

2009-03-30

OAAI

Petermann, Ivonne; Triggs, Christopher M.; Huebner, Claudia; Han, Dug Yeo; Gearry, Richard B.; Barclay, Murray L.; Demmers, Pieter S.; McCulloch, Alan; Ferguson, Lynnette R.

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Molecular evolution of the Bovini tribe (Bovidae, Bovinae): Is there evidence of rapid evolution or reduced selective constraint in Domestic cattle?

BMC GENOMICS

IF3.7

2009-01-01

OAAI

MacEachern, Sean; McEwan, John; McCulloch, Alan; Mather, Andrew; Savin, Keith; Goddard, Mike

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Single nucleotide polymorphisms in human Paneth cell defensin A5 may confer susceptibility to inflammatory bowel disease in a New Zealand Caucasian population

DIGESTIVE AND LIVER DISEASE

IF3.8

2008-09-01

PREAI

Ferguson, L. R.; Browning, B. L.; Huebner, C.; Petermann, I.; Shelling, A. N.; Demmers, P.; McCulloch, A.; Gearry, R. B.; Barclay, M. L.; Philpott, M.

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Single nucleotide polymorphism in the tumor necrosis factor-alpha gene affects inflammatory bowel diseases risk

WORLD JOURNAL OF GASTROENTEROLOGY

IF5.4

2008-01-01

OAAI

Ferguson, Lynnette R.; Huebner, Claudia; Petermann, Ivonne; Gearry, Richard B.; Barclay, Murray L.; Demmers, Pieter; McCulloch, Alan; Han, Dug Yeo

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Establishment of a pipeline to analyse non-synonymous SNPs in Bos taurus

BMC GENOMICS

IF3.7

2006-11-26

OAAI

Lee, Michael A.; Keane, Orla M.; Glass, Belinda C.; Manley, Tim R.; Cullen, Neil G.; Dodds, Ken G.; McCulloch, Alan F.; Morris, Chris A.; Schreiber, Mark; Warren, Jonathan; Zadissa, Amonida; Wilson, Theresa; McEwan, John C.

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Testing the neutral theory of molecular evolution using genomic data: a comparison of the human and bovine transcriptome

GENETICS SELECTION EVOLUTION

IF3.1

2006-04-26

OAAI

MacEachern, S; McEwan, J; Mather, A; McCulloch, A; Sunnucks, P; Goddard, M

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Research Directions