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F

Francisco M. Couto

universidade de lisboa

31H-index
261Paper Count
4.9KCitation Count
Published Papers 23
Publication Date
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Enhancing cross-encoders using knowledge graph hierarchy for medical entity linking in zero- and few-shot scenarios
errKNOWLEDGE-BASED SYSTEMS
IF7.6
err2025-04-01
err0
errOAAI
errGallego, Fernando; Ruas, Pedro; Couto, Francisco M.; Veredas, Francisco J.
errShare
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Genome-Wide Admixture and Association Study of Serum Selenium Deficiency to Identify Genetic Variants Indirectly Linked to Selenium Regulation in Brazilian Adults
errNUTRIENTS
IF5
err2024-05-26
err0
errOAAI
errWatanabe, Ligia Moriguchi; Sousa, Lisete; Couto, Francisco M.; Noronha, Natalia Yumi; Pinhel, Marcela Augusta de Souza; Carvalho, Gleyson Francisco da Silva; Rodrigues, Guilherme da Silva; Bueno, Carlos Roberto; Kulikowski, Leslie Domenici; Barbosa, Fernando; Nonino, Carla Barbosa
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Survey on Recommender Systems for Biomedical Items in Life and Health Sciences
errACM COMPUTING SURVEYS
IF28
err2024-02-23
err0
errOAAI
errPato, Matilde; Barros, Marcia; Couto, Francisco M.
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errSave
Genome-wide case-control association study identifies a locus connecting NRF2-ARE regulation and selenium deficiency
errFREE RADICAL BIOLOGY AND MEDICINE
IF8.2
err2023-11-01
err0
PREAI
errWatanabe, Ligia Moriguchi; Sousa, Lisete; Noronha, Natalia; Pinhel, Marcela; Carvalho, Gleyson; Rodrigues, Guilherme; Couto, Francisco; Bueno, Carlos, Jr.; Kulikowski, Leslie; Barbosa, Fernando, Jr.; Nonino, Carla
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errSave
Biomedical Relation Extraction With Knowledge Graph-Based Recommendations
errIEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS
IF6.8
err2022-08-01
err19
errOAAI
errSousa, Diana; Couto, Francisco M.
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errSave
NILINKER: Attention-based approach to NIL Entity Linking
errJOURNAL OF BIOMEDICAL INFORMATICS
IF4.5
err2022-08-01
err9
errOAAI
errRuas, Pedro; Couto, Francisco M.
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errSave
Hybrid semantic recommender system for chemical compounds in large-scale datasets
errJOURNAL OF CHEMINFORMATICS
IF5.7
err2021-02-23
err4
errOAAI
errBarros, Marcia; Moitinho, Andre; Couto, Francisco M.
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errSave
A hybrid approach toward biomedical relation extraction training corpora: combining distant supervision with crowdsourcing
errDATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION
IF3.6
err2020-12-01
err4
errOAAI
errSousa, Diana; Lamurias, Andre; Couto, Francisco M.
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errSave
Linking chemical and disease entities to ontologies by integrating PageRank with extracted relations from literature
errJOURNAL OF CHEMINFORMATICS
IF5.7
err2020-09-21
err9
errOAAI
errRuas, Pedro; Lamurias, Andre; Couto, Francisco M.
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errSave
DNA-SeAl: Sensitivity Levels to Optimize the Performance of Privacy-Preserving DNA Alignment
errIEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS
IF6.8
err2020-03-01
err6
errOAAI
errFernandes, Maria; Decouchant, Jeremie; Volp, Marcus; Couto, Francisco M.; Esteves-Verissimo, Paulo
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errSave
Identification of biological mechanisms underlying a multidimensional ASD phenotype using machine learning
errTRANSLATIONAL PSYCHIATRY
IF6.2
err2020-01-28
err15
errOAAI
errAsif, Muhammad; Martiniano, Hugo F. M. C.; Marques, Ana Rita; Santos, Joao Xavier; Vilela, Joana; Rasga, Celia; Oliveira, Guiomar; Couto, Francisco M.; Vicente, Astrid M.
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errSave
Generating Biomedical Question Answering Corpora From Q&A Forums
errIEEE ACCESS
IF3.6
err2020-01-01
err8
errOAAI
errLamurias, Andre; Sousa, Diana; Couto, Francisco M.
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errSave
FunVar: A systematic pipeline to unravel the convergence patterns of genetic variants in ASD, a paradigmatic complex disease
errJOURNAL OF BIOMEDICAL INFORMATICS
IF4.5
err2019-10-01
err1
errOAAI
errAsif, Muhammad; Vicente, Astrid M.; Couto, Francisco M.
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errSave
Using Research Literature to Generate Datasets of Implicit Feedback for Recommending Scientific Items
errIEEE ACCESS
IF3.6
err2019-01-01
err13
errOAAI
errBarros, Marcia; Moitinho, Andre; Couto, Francisco M.
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errSave
MER: a shell script and annotation server for minimal named entity recognition and linking
errJOURNAL OF CHEMINFORMATICS
IF5.7
err2018-12-05
err21
errOAAI
errCouto, Francisco M.; Lamurias, Andre
errShare
errSave
Witches' broom resistant genotype CCN51 shows greater diversity of symbiont bacteria in its phylloplane than susceptible genotype catongo
errBMC MICROBIOLOGY
IF4.2
err2018-11-23
err15
errOAAI
errSantana, Juliano Oliveira; Gramacho, Karina Peres; de Souza Eduvirgens Ferreira, Katiucia Ticila; Rezende, Rachel Passos; Oliveira Mangabeira, Pedro Antonio; Moreira Dias, Ricardo Pedro; Couto, Francisco M.; Pirovani, Carlos Priminho
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errSave
Accurate filtering of privacy-sensitive information in raw genomic data
errJOURNAL OF BIOMEDICAL INFORMATICS
IF4.5
err2018-06-01
err13
errOAAI
errDecouchant, Jeremie; Fernandes, Maria; Volp, Marcus; Couto, Francisco M.; Esteves-Verissimo, Paulo
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errSave
Generating a Tolerogenic Cell Therapy Knowledge Graph from Literature
errFRONTIERS IN IMMUNOLOGY
IF5.9
err2017-11-29
err9
errOAAI
errLamurias, Andre; Ferreira, Joao D.; Clarke, Luka A.; Couto, Francisco M.
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errSave
Impact of translation on named-entity recognition in radiology texts
errDATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION
IF3.6
err2017-08-28
err3
errOAAI
errCampos, Luis; Pedro, Vasco; Couto, Francisco
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errSave
The CHEMDNER corpus of chemicals and drugs and its annotation principles
errJOURNAL OF CHEMINFORMATICS
IF5.7
err2015-01-19
err198
errOAAI
errKrallinger, Martin; Rabal, Obdulia; Leitner, Florian; Vazquez, Miguel; Salgado, David; Lu, Zhiyong; Leaman, Robert; Lu, Yanan; Ji, Donghong; Lowe, Daniel M.; Sayle, Roger A.; Batista-Navarro, Riza Theresa; Rak, Rafal; Huber, Torsten; Rocktaschel, Tim; Matos, Serergio; Campos, David; Tang, Buzhou; Xu, Hua; Munkhdalai, Tsendsuren; Ryu, Keun Ho; Ramanan, S. V.; Nathan, Senthil; Zitnik, Slavko; Bajec, Marko; Weber, Lutz; Irmer, Matthias; Akhondi, Saber A.; Kors, Jan A.; Xu, Shuo; An, Xin; Sikdar, Utpal Kumar; Ekbal, Asif; Yoshioka, Masaharu; Dieb, Thaer M.; Choi, Miji; Verspoor, Karin; Khabsa, Madian; Giles, C. Lee; Liu, Hongfang; Ravikumar, Komandur Elayavilli; Lamurias, Andre; Couto, Francisco M.; Dai, Hong-Jie; Tsai, Richard Tzong-Han; Ata, Caglar; Can, Tolga; Usie, Anabel; Alves, Rui; Segura-Bedmar, Isabel; Martinez, Paloma; Oyarzabal, Julen; Valencia, Alfonso
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Research Directions

No research directions
Co-authors
Cooperation Journals
A
Alfonso Valencia
H-index: 127 · Papers: 866
C
C. Lee Giles
H-index: 95 · Papers: 731
Z
Zhiyong Lu
H-index: 82 · Papers: 462
J
Jan A. Kors
H-index: 71 · Papers: 432
F
Fernando Barbosa
H-index: 65 · Papers: 624
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