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Lynne Penberthy

Oak Ridge National Laboratory

31H-index
121Paper Count
4.2KCitation Count
Published Papers 29
Publication Date
A novel analysis methodology for assessment of re-identification risks for the National Cancer Institute cancer registry privacy preserving record linkage technique
err2025-10-01
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PREAI
errKantarcioglu, Murat; Howe, Will; Liu, Benmei; Petkov, Valentina; Casas-Silva, Esmeralda; Velasquez-Kolnik, Diana; Malin, Bradley A.; Penberthy, Lynne
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Large-scale deep learning for metastasis detection in pathology reports
err2025-08-01
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errOAAI
errKrawczuk, Patrycja; Fox, Zachary R.; Petkov, Valentina; Negoita, Serban; Doherty, Jennifer; Stroup, Antoinette; Schwartz, Stephen; Penberthy, Lynne; Hsu, Elizabeth; Gounley, John; Hanson, Heidi A.
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Coronavirus Disease 2019 (COVID-19) Real World Data Infrastructure: A Big-Data Resource for Study of the Impact of COVID-19 in Patient Populations With Immunocompromising Conditions
err2025-01-23
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errOAAI
errCrawford, James M.; Penberthy, Lynne; Pinto, Ligia A.; Althoff, Keri N.; Assimon, Magdalene M.; Cohen, Oren; Gillim, Laura; Hammonds, Tracy L.; Kapur, Shilpa; Kaufman, Harvey W.; Kwasny, David; Liew, Jean W.; Meyer, William A.; Reynolds, Shannon L.; Schleicher, Cheryl B.; Subbiah, Suki; Theruviparampil, Catherine; Wallace, Zachary S.; Warner, Jeremy L.; Yoon, Suhyeon; Ziemba, Yonah C.
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Automated extraction and provision of electronic health record data from children with cancer to National Childhood Cancer Center (NCCR) cancer registries
err2024-09-05
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PREAI
errMiller, Tamara P.; Jones, Johanna Goderre; Hsu, Elizabeth; Krause, Edward; Jo, Yun Gun; Lee, Judy; Ward, Kevin; Penberthy, Lynne; Aplenc, Richard
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Multimodal machine learning for the automatic classification of recurrent cancers
err2024-03-22
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PREAI
errKrawczuk, Patrycja; Fox, Zachary; Murdock, Dakota; Doherty, Jennifer; Stroupe, Antoinette; Schwartz, Stephen M.; Penberthy, Lynne; Hsu, Elizabeth; Negoita, Serban; Petkov, Valentina; Hanson, Heidi
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Deep learning uncertainty quantification for clinical text classification
err2024-01-01
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errOAAI
errPeluso, Alina; Danciu, Ioana; Yoon, Hong-Jun; Yusof, Jamaludin Mohd; Bhattacharya, Tanmoy; Spannaus, Adam; Schaefferkoetter, Noah; Durbin, Eric B.; Wu, Xiao-Cheng; Stroup, Antoinette; Doherty, Jennifer; Schwartz, Stephen; Wiggins, Charles; Coyle, Linda; Penberthy, Lynne; Tourassi, Georgia D.; Gao, Shang
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Impact on the Volume of Pathology Reports Before and During the COVID-19 Pandemic in SEER Cancer Registries
err2023-08-18
err5
errOAAI
errChtourou, Amina; Sanchez, Pamela V.; Golden, Todd; Chen, Huann-Sheng; Schwartz, Stephen M.; Wu, Xiao-Cheng; Hernandez, Brenda Y.; Harrison, Jovanka N.; Penberthy, Lynne; Negoita, Serban
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Ascertainment of Incident Cancer by US Population-Based Cancer Registries Versus Self-Reports and Death Certificates in a Nationwide Cohort Study, the US Radiologic Technologists Study
err2022-07-22
err8
errOAAI
errLiu, Danping; Linet, Martha S.; Albert, Paul S.; Landgren, Annelie M.; Kitahara, Cari M.; Iwan, Allison; Clerkin, Castine; Kohler, Betsy; Alexander, Bruce H.; Penberthy, Lynne
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A Keyword-Enhanced Approach to Handle Class Imbalance in Clinical Text Classification
err2022-06-01
err5
errOAAI
errBlanchard, Andrew E.; Gao, Shang; Yoon, Hong-Jun; Christian, J. Blair; Durbin, Eric B.; Wu, Xiao-Cheng; Stroup, Antoinette; Doherty, Jennifer; Schwartz, Stephen M.; Wiggins, Charles; Coyle, Linda; Penberthy, Lynne; Tourassi, Georgia D.
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Class imbalance in out-of-distribution datasets: Improving the robustness of the TextCNN for the classification of rare cancer types
err2022-01-01
err25
errOAAI
errDe Angeli, Kevin; Gao, Shang; Danciu, Ioana; Durbin, Eric B.; Wu, Xiao-Cheng; Stroup, Antoinette; Doherty, Jennifer; Schwartz, Stephen; Wiggins, Charles; Damesyn, Mark; Coyle, Linda; Penberthy, Lynne; Tourassi, Georgia D.; Yoon, Hong-Jun
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Privacy-Preserving Deep Learning NLP Models for Cancer Registries
err2021-07-01
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errOAAI
errAlawad, Mohammed; Yoon, Hong-Jun; Gao, Shang; Mumphrey, Brent; Wu, Xiao-Cheng; Durbin, Eric B.; Jeong, Jong Cheol; Hands, Isaac; Rust, David; Coyle, Linda; Penberthy, Lynne; Tourassi, Georgia
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Evaluation of next generation sequencing of DNA and RNA from archival formalin-fixed, paraffin-embedded pancreatic cancer tissue: A pilot study of the SEER-linked virtual tissue repository
err2020-08-15
err0
PREAI
errYuan, Yao; Van Dyke, Alison; Petkov, Valentina; Tuan, Alyssa; Singhi, Aatur; Matrisian, Lynn; Rahib, Lola; Pearson, John; Nones, Katia; Waddell, Nicola; Zhao, Yongmei; Shen, Tsai-wei; Tran, Bao; Shetty, Jyoti; Gillanders, Elizabeth; Carrick, Danielle; Cress, Rosemary; Mueller, Lloyd; Hernandez, Brenda; Lynch, Charles; Tucker, Thomas; Wu, Xiao-Cheng; Penberthy, Lynne
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Classifying cancer pathology reports with hierarchical self-attention networks
err2019-11-01
err35
errOAAI
errGao, Shang; Qiu, John X.; Alawad, Mohammed; Hinkle, Jacob D.; Schaefferkoetter, Noah; Yoon, Hong-Jun; Christian, Blair; Fearn, Paul A.; Penberthy, Lynne; Wu, Xiao-Cheng; Coyle, Linda; Tourassi, Georgia; Ramanathan, Arvind
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AI Meets Exascale Computing: Advancing Cancer Research With Large-Scale High Performance Computing
err2019-10-02
err23
errOAAI
errBhattacharya, Tanmoy; Brettin, Thomas; Doroshow, James H.; Evrard, Yvonne A.; Greenspan, Emily J.; Gryshuk, Amy L.; Hoang, Thuc T.; Lauzon, Carolyn B. Vea; Nissley, Dwight; Penberthy, Lynne; Stahlberg, Eric; Stevens, Rick; Streitz, Fred; Tourassi, Georgia; Xia, Fangfang; Zaki, George
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DNA and RNA from formalin-fixed, paraffin-embedded pancreatic cancer tissue for sequencing: A pilot study of the SEER-linked Virtual Tissue Repository
err2019-07-01
err0
PREAI
errYuan, Yao; Van Dyke, Alison; Petkov, Valentina; Singhi, Aatur; Hoos, William; Rahib, Lola; Matrisian, Lynn; Penberthy, Lynne
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Reply to annual report to the nation on the status of cancer, part II: Recent changes in prostate cancer trends and disease characteristics
errCANCER
IF5.1
err2018-11-14
err4
errOAAI
errNegoita, Serban; Mariotto, Angela; Benard, Vicki; Kohler, Betsy A.; Jemal, Ahmedin; Penberthy, Lynne
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Breast-cancer-specific mortality in patients treated based on the 21-gene assay: a SEER population-based study (vol 2, 16017, 2016)
err2018-07-06
err1
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errPetkov, Valentina I.; Miller, Dave P.; Howlader, Nadia; Gliner, Nathan; Howe, Will; Schussler, Nicola; Cronin, Kathleen; Baehner, Frederick L.; Cress, Rosemary; Deapen, Dennis; Glaser, Sally L.; Hernandez, Brenda Y.; Lynch, Charles F.; Mueller, Lloyd; Schwartz, Ann G.; Schwartz, Stephen M.; Stroup, Antoinette; Sweeney, Carol; Tucker, Thomas C.; Ward, Kevin C.; Wiggins, Charles; Wu, Xiao-Cheng; Penberthy, Lynne; Shak, Steven
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Estimation of the Number of Women Living with Metastatic Breast Cancer in the United States
err2017-05-31
err450
errOAAI
errMariotto, Angela B.; Etzioni, Ruth; Hurlbert, Marc; Penberthy, Lynne; Mayer, Musa
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SEER study of breast cancer-specific mortality in patients with poorly differentiated tumors treated based on recurrence score results
err2017-02-15
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PREAI
errPetkov, V. I.; Miller, D. P.; Howlader, N.; Baehner, F. L.; Penberthy, L.; Shak, S.
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