Not logged in Integrating DNA methylation and gene expression data in a single gene network using the iNETgrate package Sajedi, Sogand; Ebrahimi, Ghazal; Roudi, Raheleh; Mehta, Isha; Heshmat, Amirreza; Samimi, Hanie; Kazempour, Shiva; Zainulabadeen, Aamir; Docking, Thomas Roderick; Arora, Sukeshi Patel; Cigarroa, Francisco; Seshadri, Sudha; Karsan, Aly; Zare, Habil Share Save
A clinical transcriptome approach to patient stratification and therapy selection in acute myeloid leukemia Docking, T. Roderick; Parker, Jeremy D. K.; Jadersten, Martin; Duns, Gerben; Chang, Linda; Jiang, Jihong; Pilsworth, Jessica A.; Swanson, Lucas A.; Chan, Simon K.; Chiu, Readman; Nip, Ka Ming; Mar, Samantha; Mo, Angela; Wang, Xuan; Martinez-Hoyer, Sergio; Stubbins, Ryan J.; Mungall, Karen L.; Mungall, Andrew J.; Moore, Richard A.; Jones, Steven J. M.; Birol, Inanc; Marra, Marco A.; Hogge, Donna; Karsan, Aly Share Save
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Loss of lenalidomide-induced megakaryocytic differentiation leads to therapy resistance in del(5q) myelodysplastic syndrome Martinez-Hoyer, Sergio; Deng, Yu; Parker, Jeremy; Jiang, Jihong; Mo, Angela; Docking, T. Roderick; Gharaee, Nadia; Li, Jenny; Umlandt, Patricia; Fuller, Megan; Jadersten, Martin; Kulasekararaj, Austin; Malcovati, Luca; List, Alan F.; Hellstrom-Lindberg, Eva; Platzbecker, Uwe; Karsan, Aly Share Save
Sample Tracking Using Unique Sequence Controls Moore, Richard A.; Zeng, Thomas; Docking, T. Roderick; Bosdet, Ian; Butterfield, Yaron S.; Munro, Sarah; Li, Irene; Swanson, Lucas; Starks, Elizabeth R.; Tse, Kane; Mungall, Andrew J.; Holt, Robert A.; Karsan, Aly Share Save
Fixation Effects on Variant Calling in a Clinical Resequencing Panel Parker, Jeremy D. K.; Yap, Shyong Quin; Starks, Elizabeth; Slind, Jillian; Swanson, Lucas; Docking, T. Roderick; Fuller, Megan; Zhou, Chen; Walker, Blair; Filipenko, Douglas; Xiong, Wei; Karimuddin, Ahmer A.; Phang, P. Terry; Raval, Manoj; Brown, Carl J.; Karsan, Aly Share Save
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Meis2 as a critical player in MN1-induced leukemia Lai, C. K.; Norddahl, G. L.; Maetzig, T.; Rosten, P.; Lohr, T.; Milde, L. Sanchez; von Krosigk, N.; Docking, T. R.; Heuser, M.; Karsan, A.; Humphries, R. K. Share Save
A Clinically Validated Diagnostic Second-Generation Sequencing Assay for Detection of Hereditary BRCA1 and BRCA2 Mutations Bosdet, Ian E.; Docking, T. Roderick; Butterfield, Yaron S.; Mungall, Andrew J.; Zeng, Thomas; Coope, Robin J.; Yorida, Erika; Chow, Katie; Bala, Miruna; Young, Sean S.; Hirst, Martin; Birol, Inanc; Moore, Richard A.; Jones, Steven J.; Marra, Marco A.; Holt, Rob; Karsan, Aly Share Save
Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies Swanson, Lucas; Robertson, Gordon; Mungall, Karen L.; Butterfield, Yaron S.; Chiu, Readman; Corbett, Richard D.; Docking, T. Roderick; Hogge, Donna; Jackman, Shaun D.; Moore, Richard A.; Mungall, Andrew J.; Nip, Ka Ming; Parker, Jeremy D. K.; Qian, Jenny Qing; Raymond, Anthony; Sung, Sandy; Tam, Angela; Thiessen, Nina; Varhol, Richard; Wang, Sherry; Yorukoglu, Deniz; Zhao, YongJun; Hoodless, Pamela A.; Sahinalp, S. Cenk; Karsan, Aly; Birol, Inanc Share Save
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species Bradnam, Keith R.; Fass, Joseph N.; Alexandrov, Anton; Baranay, Paul; Bechner, Michael; Birol, Inanc; Boisvert, Sebastien; Chapman, Jarrod A.; Chapuis, Guillaume; Chikhi, Rayan; Chitsaz, Hamidreza; Chou, Wen-Chi; Corbeil, Jacques; Del Fabbro, Cristian; Docking, T. Roderick; Durbin, Richard; Earl, Dent; Emrich, Scott; Fedotov, Pavel; Fonseca, Nuno A.; Ganapathy, Ganeshkumar; Gibbs, Richard A.; Gnerre, Sante; Godzaridis, Elenie; Goldstein, Steve; Haimel, Matthias; Hall, Giles; Haussler, David; Hiatt, Joseph B.; Ho, Isaac Y.; Howard, Jason; Hunt, Martin; Jackman, Shaun D.; Jaffe, David B.; Jarvis, Erich D.; Jiang, Huaiyang; Kazakov, Sergey; Kersey, Paul J.; Kitzman, Jacob O.; Knight, James R.; Koren, Sergey; Lam, Tak-Wah; Lavenier, Dominique; Laviolette, Francois; Li, Yingrui; Li, Zhenyu; Liu, Binghang; Liu, Yue; Luo, Ruibang; MacCallum, Iain; MacManes, Matthew D.; Maillet, Nicolas; Melnikov, Sergey; Naquin, Delphine; Ning, Zemin; Otto, Thomas D.; Paten, Benedict; Paulo, Octavio S.; Phillippy, Adam M.; Pina-Martins, Francisco; Place, Michael; Przybylski, Dariusz; Qin, Xiang; Qu, Carson; Ribeiro, Filipe J.; Richards, Stephen; Rokhsar, Daniel S.; Ruby, J. Graham; Scalabrin, Simone; Schatz, Michael C.; Schwartz, David C.; Sergushichev, Alexey; Sharpe, Ted; Shaw, Timothy I.; Shendure, Jay; Shi, Yujian; Simpson, Jared T.; Song, Henry; Tsarev, Fedor; Vezzi, Francesco; Vicedomini, Riccardo; Vieira, Bruno M.; Wang, Jun; Worley, Kim C.; Yin, Shuangye; Yiu, Siu-Ming; Yuan, Jianying; Zhang, Guojie; Zhang, Hao; Zhou, Shiguo; Korf, Ian F. Share Save
The genome and transcriptome of the pine saprophyte Ophiostoma piceae, and a comparison with the bark beetle-associated pine pathogen Grosmannia clavigera Haridas, Sajeet; Wang, Ye; Lim, Lynette; Alamouti, Sepideh Massoumi; Jackman, Shaun; Docking, Rod; Robertson, Gordon; Birol, Inanc; Bohlmann, Joerg; Breuil, Colette Share Save
Transcriptome resources and functional characterization of monoterpene synthases for two host species of the mountain pine beetle, lodgepole pine (Pinus contorta) and jack pine (Pinus banksiana) Hall, Dawn E.; Yuen, Macaire M. S.; Jancsik, Sharon; Quesada, Alfonso Lara; Dullat, Harpreet K.; Li, Maria; Henderson, Hannah; Arango-Velez, Adriana; Liao, Nancy Y.; Docking, Roderick T.; Chan, Simon K.; Cooke, Janice E. K.; Breuil, Colette; Jones, Steven J. M.; Keeling, Christopher I.; Bohlmann, Joerg Share Save
Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest Keeling, Christopher I.; Yuen, Macaire M. S.; Liao, Nancy Y.; Docking, T. Roderick; Chan, Simon K.; Taylor, Greg A.; Palmquist, Diana L.; Jackman, Shaun D.; Anh Nguyen; Li, Maria; Henderson, Hannah; Janes, Jasmine K.; Zhao, Yongjun; Pandoh, Pawan; Moore, Richard; Sperling, Felix A. H.; Huber, Dezene P. W.; Birol, Inanc; Jones, Steven J. M.; Bohlmann, Joerg Share Save
Transcriptome and full-length cDNA resources for the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major insect pest of pine forests Keeling, Christopher I.; Henderson, Hannah; Li, Maria; Yuen, Mack; Clark, Erin L.; Fraser, Jordie D.; Huber, Dezene P. W.; Liao, Nancy Y.; Docking, T. Roderick; Birol, Inanc; Chan, Simon K.; Taylor, Greg A.; Palmquist, Diana; Jones, Steven J. M.; Bohlmann, Joerg Share Save
Updated genome assembly and annotation of Paenibacillus larvae, the agent of American foulbrood disease of honey bees Chan, Queenie W. T.; Cornman, R. Scott; Birol, Inanc; Liao, Nancy Y.; Chan, Simon K.; Docking, T. Roderick; Jackman, Shaun D.; Taylor, Greg A.; Jones, Steven J. M.; de Graaf, Dirk C.; Evans, Jay D.; Foster, Leonard J. Share Save
Assemblathon 1: A competitive assessment of de novo short read assembly methods Earl, Dent; Bradnam, Keith; St John, John; Darling, Aaron; Lin, Dawei; Fass, Joseph; Hung On Ken Yu; Buffalo, Vince; Zerbino, Daniel R.; Diekhans, Mark; Ngan Nguyen; Ariyaratne, Pramila Nuwantha; Sung, Wing-Kin; Ning, Zemin; Haimel, Matthias; Simpson, Jared T.; Fonseca, Nuno A.; Birol, Inanc; Docking, T. Roderick; Ho, Isaac Y.; Rokhsar, Daniel S.; Chikhi, Rayan; Lavenier, Dominique; Chapuis, Guillaume; Naquin, Delphine; Maillet, Nicolas; Schatz, Michael C.; Kelley, David R.; Phillippy, Adam M.; Koren, Sergey; Yang, Shiaw-Pyng; Wu, Wei; Chou, Wen-Chi; Srivastava, Anuj; Shaw, Timothy I.; Ruby, J. Graham; Skewes-Cox, Peter; Betegon, Miguel; Dimon, Michelle T.; Solovyev, Victor; Seledtsov, Igor; Kosarev, Petr; Vorobyev, Denis; Ramirez-Gonzalez, Ricardo; Leggett, Richard; MacLean, Dan; Xia, Fangfang; Luo, Ruibang; Li, Zhenyu; Xie, Yinlong; Liu, Binghang; Gnerre, Sante; MacCallum, Iain; Przybylski, Dariusz; Ribeiro, Filipe J.; Yin, Shuangye; Sharpe, Ted; Hall, Giles; Kersey, Paul J.; Durbin, Richard; Jackman, Shaun D.; Chapman, Jarrod A.; Huang, Xiaoqiu; DeRisi, Joseph L.; Caccamo, Mario; Li, Yingrui; Jaffe, David B.; Green, Richard E.; Haussler, David; Korf, Ian; Paten, Benedict Share Save
Genome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogen DiGuistini, Scott; Wang, Ye; Liao, Nancy Y.; Taylor, Greg; Tanguay, Philippe; Feau, Nicolas; Henrissat, Bernard; Chan, Simon K.; Hesse-Orce, Uljana; Alamouti, Sepideh Massoumi; Tsui, Clement K. M.; Docking, Roderick T.; Levasseur, Anthony; Haridas, Sajeet; Robertson, Gordon; Birol, Inanc; Holt, Robert A.; Marra, Marco A.; Hamelin, Richard C.; Hirst, Martin; Jones, Steven J. M.; Bohlmann, Joerg; Breuil, Colette Share Save
Gene discovery for the bark beetle-vectored fungal tree pathogen Grosmannia clavigera Hesse-Orce, Uljana; DiGuistini, Scott; Keeling, Christopher I.; Wang, Ye; Li, Maria; Henderson, Hannah; Docking, T. Roderick; Liao, Nancy Y.; Robertson, Gordon; Holt, Robert A.; Jones, Steven J. M.; Bohlmann, Joerg; Breuil, Colette Share Save
A regulatory toolbox of MiniPromoters to drive selective expression in the brain Portales-Casamar, Elodie; Swanson, Douglas J.; Liu, Li; de Leeuw, Charles N.; Banks, Kathleen G.; Sui, Shannan J. Ho; Fulton, Debra L.; Ali, Johar; Amirabbasi, Mahsa; Arenillas, David J.; Babyak, Nazar; Black, Sonia F.; Bonaguro, Russell J.; Brauer, Erich; Candido, Tara R.; Castellarin, Mauro; Chen, Jing; Chen, Ying; Cheng, Jason C. Y.; Chopra, Vik; Docking, T. Roderick; Dreolini, Lisa; D'Souza, Cletus A.; Flynn, Erin K.; Glenn, Randy; Hatakka, Kristi; Hearty, Taryn G.; Imanian, Behzad; Jiang, Steven; Khorasan-zadeh, Shadi; Komljenovic, Ivana; Laprise, Stephanie; Liao, Nancy Y.; Lim, Jonathan S.; Lithwick, Stuart; Liu, Flora; Liu, Jun; Lu, Meifen; McConechy, Melissa; McLeod, Andrea J.; Milisavljevic, Marko; Mis, Jacek; O'Connor, Katie; Palma, Betty; Palmquist, Diana L.; Schmouth, Jean-Francois; Swanson, Magdalena I.; Tam, Bonny; Ticoll, Amy; Turner, Jenna L.; Varhol, Richard; Vermeulen, Jenny; Watkins, Russell F.; Wilson, Gary; Wong, Bibiana K. Y.; Wong, Siaw H.; Wong, Tony Y. T.; Yang, George S.; Ypsilanti, Athena R.; Jones, Steven J. M.; Holt, Robert A.; Goldowitz, Daniel; Wasserman, Wyeth W.; Simpson, Elizabeth M. Share Save
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