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Ramón Alain Miranda‐Quintana

university of florida

31H-index
152Paper Count
2.3KCitation Count
Published Papers 42
Publication Date
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A New Family of Seniority-Restricted Coupled Cluster Methods
errThe Journal of Physical Chemistry A
IF2.8
err2026-05-29
err0
PREAI
errRugwed Lokhande; Carlos E. V. de Moura; Krisztina Zsigmond; Paul W. Ayers; Ramón Alain Miranda-Quintana
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Exploring New Construction Schemes for Extended-Hierarchy Configuration-Interaction Wave Functions
errJournal of Physical Chemistry A
IF2.8
err2026-05-01
err0
PREAI
errLokhande, Rugwed A.; de Moura, Carlos E. V.; Gaikwad, Pratiksha B.; Miranda-Quintana, Ramon Alain
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Scaling k-Means for Multi-Million Frames: A Stratified NANI Approach for Large-Scale MD Simulations
errJournal of Chemical Information and Modeling
IF5.3
err2026-04-21
err0
PREAI
errJherome Brylle Woody Santos; Lexin Chen; Ramón Alain Miranda-Quintana
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mdBIRCH for Fast; Scalable; Online Clustering of Molecular Dynamics Trajectories
errJournal of Chemical Theory and Computation
IF5.5
err2026-04-15
err0
PREAI
errJherome Brylle Woody Santos; Lexin Chen; Ramón Alain Miranda-Quintana
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Divide and Cluster: The DIVINE Framework for Deterministic Top-Down Analysis of Molecular Dynamics Trajectories
errJournal of Chemical Information and Modeling
IF5.3
err2026-04-10
err0
PREAI
errJherome Brylle Woody Santos; Lexin Chen; Ramón Alain Miranda-Quintana
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Ubiquitous Negative Electron Densities Discredit Smooth Energy Interpolation in Density Functional Theory
errThe Journal of Physical Chemistry Letters
IF0
err2026-04-08
err0
PREAI
errMichelle Richer; Marco Martínez González; Gabriela Sanchez-Diaz; Ramón Alain Miranda-Quintana; Farnaz Heidar-Zadeh; Paul W. Ayers
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Selector: A General Python Library for Diverse Subset Selection
errJournal of Chemical Information and Modeling
IF5.3
err2026-01-27
err0
PREAI
errFanwang Meng; Marco Martínez González; Valerii Chuiko; Alireza Tehrani; Abdul Rahman Al Nabulsi; Abigail Broscius; Hasan Khaleel; Kenneth López-Pérez; Ramón Alain Miranda-Quintana; Paul W. Ayers; Farnaz Heidar-Zadeh
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Characterizing the Energy Surfaces of Competing Pathways in Gas-Phase Charge Inversion Ion/Ion Reactions Involving Cationized Lipids and Anionic Diacids
errJOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
IF2.7
err2025-09-01
err0
PREAI
errGuo, Yingchan; Specker, Jonathan T.; Gaikwad, Pratiksha B.; Miranda-Quintana, Ramon Alain; Prentice, Boone M.
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iSIM-Sigma: Efficient Standard Deviation Calculation for Molecular Similarity
errJournal of Chemical Information and Modeling
IF5.3
err2025-06-18
err0
PREAI
errKenneth Lopez-Perez; Bill Zhao; Ramón Alain Miranda-Quintana
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CADENCE: Clustering Algorithm─Density-Based Exploration and Novelty Clustering with Efficiency
errJournal of Chemical Information and Modeling
IF5.3
err2025-06-17
err0
errOAAI
errLexin Chen; Daniel R. Roe; Ramón Alain Miranda-Quintana
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Growth vs Diversity: A Time-Evolution Analysis of the Chemical Space
errJournal of Chemical Information and Modeling
IF5.3
err2025-06-13
err0
errOAAI
errKenneth Lopez Perez; Edgar López-López; Flavie Soulage; Eloy Felix; José L. Medina-Franco; Ramon Alain Miranda-Quintana
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iCliff Taylor's Version: Robust and Efficient Activity Cliff Determination
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2025-05-22
err0
errOAAI
errLopez-Perez, Kenneth; Miranda-Quintana, Ramon Alain
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PyCI: A Python-scriptable library for arbitrary determinant CI
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2024-10-04
err2
PREAI
errRicher, Michelle; Sanchez-Diaz, Gabriela; Martinez-Gonzalez, Marco; Chuiko, Valerii; Kim, Taewon David; Tehrani, Alireza; Wang, Shuoyang; Gaikwad, Pratiksha B.; de Moura, Carlos E. V.; Masschelein, Cassandra; Miranda-Quintana, Ramon Alain; Gerolin, Augusto; Heidar-Zadeh, Farnaz; Ayers, Paul W.
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Protein Retrieval via Integrative Molecular Ensembles (PRIME) through Extended Similarity Indices
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2024-07-09
err0
errOAAI
errChen, Lexin; Mondal, Arup; Perez, Alberto; Miranda-Quintana, Ramon Alain
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k-Means NANI: An Improved Clustering Algorithm for Molecular Dynamics Simulations
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2024-06-21
err3
errOAAI
errChen, Lexin; Roe, Daniel R.; Kochert, Matthew; Simmerling, Carlos; Miranda-Quintana, Ramon Alain
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Coupled cluster-inspired geminal wavefunctions
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2024-04-10
err6
errOAAI
errGaikwad, Pratiksha B.; Kim, Taewon D.; Richer, M.; Lokhande, Rugwed A.; Sanchez-Diaz, Gabriela; Limacher, Peter A.; Ayers, Paul W.; Miranda-Quintana, Ramon Alain
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Extended similarity methods for efficient data mining in imaging mass spectrometry
errDIGITAL DISCOVERY
IF5.6
err2024-01-01
err1
errOAAI
errEllin, Nicholas R.; Guo, Yingchan; Miranda-Quintana, Ramon Alain; Prentice, Boone M.
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errSave
iSIM: instant similarity
errDIGITAL DISCOVERY
IF5.6
err2024-01-01
err1
errOAAI
errLopez-Perez, Kenneth; Kim, Taewon D.; Miranda-Quintana, Ramon Alain
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errSave
Sampling and Mapping Chemical Space with Extended Similarity Indices
errMOLECULES
IF4.6
err2023-08-30
err5
errOAAI
errLopez-Perez, Kenneth; Lopez-Lopez, Edgar; Medina-Franco, Jose L.; Miranda-Quintana, Ramon Alain
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Chemoinformatics and artificial intelligence colloquium: progress and challenges in developing bioactive compounds
errJOURNAL OF CHEMINFORMATICS
IF5.7
err2022-12-02
err18
errOAAI
errBajorath, Juergen; Chavez-Hernandez, Ana L. L.; Duran-Frigola, Miquel; Fernandez-de Gortari, Eli; Gasteiger, Johann; Lopez-Lopez, Edgar; Maggiora, Gerald M. M.; Medina-Franco, Jose L.; Mendez-Lucio, Oscar; Mestres, Jordi; Miranda-Quintana, Ramon Alain; Oprea, Tudor I. I.; Plisson, Fabien; Prieto-Martinez, Fernando D. D.; Rodriguez-Perez, Raquel; Rondon-Villarreal, Paola; Saldivar-Gonzalez, Fernanda I. I.; Sanchez-Cruz, Norberto; Valli, Marilia
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Research Directions

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Co-authors
Cooperation Journals
T
Tudor I. Oprea
H-index: 85 · Papers: 509
P
Paul W. Ayers
H-index: 76 · Papers: 518
J
Jürgen Bajorath
H-index: 76 · Papers: 1.1K
P
Pratim Kumar Chattaraj
H-index: 72 · Papers: 606
S
Shubin Liu
H-index: 62 · Papers: 462
View more