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D

D. Thirumalai

university of texas at austin

97H-index
632Paper Count
3.1WCitation Count
Published Papers 183
Publication Date
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Rotational migration in human pancreatic ductal organoids depends on actin and myosin activity
errCommunications Biology
IF5.1
err2025-12-05
err0
errOAAI
errGengqiang Xie; Chaity Modak; Olalekan H. Usman; Raphael W. F. Tan; Nicole Coca; Gabriela De Jesus; Yue Julia Wang; D. Thirumalai; Xin Li; Jerome Irianto
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Iterative Annealing Mechanism for Protein and RNA Chaperones
errBiophysical Journal
IF3.1
err2025-10-14
err0
PREAI
errChangbong Hyeon; D. Thirumalai
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errSave
Controlling intermolecular base pairing in Drosophila germ granules by mRNA folding and its implications in fly development
errNature Communications
IF15.7
err2025-08-30
err0
errOAAI
errSiran Tian; Hung Nguyen; Ziqing Ye; Silvi Rouskin; D. Thirumalai; Tatjana Trcek
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errSave
Static three-dimensional structures determine fast dynamics between distal loci pairs in interphase chromosomes
errScience Advances
IF12.5
err2025-08-01
err0
errOAAI
errGuang Shi; Sucheol Shin; D. Thirumalai
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errSave
Water-Mediated Interactions between Glycans Are Weakly Repulsive and Unexpectedly Long-Ranged
errJOURNAL OF THE AMERICAN CHEMICAL SOCIETY
IF15.6
err2025-05-13
err0
errOAAI
errShin, Sucheol; Mugnai, Mauro L.; Thirumalai, D.
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errSave
Sizes, conformational fluctuations, and SAXS profiles for intrinsically disordered proteins
errPROTEIN SCIENCE
IF5.2
err2025-03-17
err0
PREAI
errMugnai, Mauro L.; Chakraborty, Debayan; Nguyen, Hung T.; Maksudov, Farkhad; Kumar, Abhinaw; Zeno, Wade; Stachowiak, Jeanne C.; Straub, John E.; Thirumalai, D.
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Collective dynamic length increases monotonically in pinned and unpinned glass forming systems
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2025-02-04
err0
errOAAI
errDas, Rajsekhar; Kirkpatrick, T. R.; Thirumalai, D.
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errSave
Sequence complexity and monomer rigidity control the morphologies and aging dynamics of protein aggregates
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2024-12-06
err0
PREAI
errTakaki, Ryota; Thirumalai, D.
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errSave
On the control of cell proliferation
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2024-12-02
err0
PREAI
errThirumalai, D.; Das, Rajsekhar; Li, Xin
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errSave
Structural basis for the preservation of a subset of topologically associating domains in interphase chromosomes upon cohesin depletion
errELIFE
IF0
err2024-03-19
err1
errOAAI
errJeong, Davin; Shi, Guang; Li, Xin; Thirumalai, D.
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errSave
Competition between Stacking and Divalent Cation-Mediated Electrostatic Interactions Determines the Conformations of Short DNA Sequences
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2024-03-18
err1
errOAAI
errMondal, Balaka; Chakraborty, Debayan; Hori, Naoto; Nguyen, Hung T.; Thirumalai, D.
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errSave
Transcription-induced active forces suppress chromatin motion
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2024-03-15
err2
errOAAI
errShin, Sucheol; Shi, Guang; Cho, Hyun Woo; Thirumalai, D.
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errSave
Brewing COFFEE: A Sequence-Specific Coarse-Grained Energy Function for Simulations of DNA-Protein Complexes
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2024-01-19
err7
errOAAI
errChakraborty, Debayan; Mondal, Balaka; Thirumalai, D.
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errSave
Free volume theory explains the unusual behavior of viscosity in a non-confluent tissue during morphogenesis
errELIFE
IF0
err2024-01-19
err0
errOAAI
errDas, Rajsekhar; Sinha, Sumit; Li, Xin; Kirkpatrick, T. R.; Thirumalai, D.
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errSave
Watching ion-driven kinetics of ribozyme folding and misfolding caused by energetic and topological frustration one molecule at a time
errNUCLEIC ACIDS RESEARCH
IF13.1
err2023-09-27
err2
errOAAI
errHori, Naoto; Thirumalai, D.
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errSave
Conformational fluctuations and phases in fused in sarcoma (FUS) low-complexity domain
errBIOPOLYMERS
IF3.2
err2023-07-03
err4
errOAAI
errThirumalai, D.; Kumar, Abhinaw; Chakraborty, Debayan; Straub, John E.; Mugnai, Mauro L.
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errSave
Odd-even disparity in the population of slipped hairpins in RNA repeat sequences with implications for phase separation
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2023-06-05
err6
errOAAI
errMaity, Hiranmay; Nguyen, Hung T.; Hori, Naoto; Thirumalai, D.
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errSave
Allosteric communication between ACE2 active site and binding interface with SARS-CoV-2
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2023-06-01
err6
PREAI
errMugnai, Mauro L.; Thirumalai, D.
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errSave
Structural changes in chromosomes driven by multiple condensin motors during mitosis
errCELL REPORTS
IF6.9
err2023-04-01
err2
errOAAI
errDey, Atreya; Shi, Guang; Takaki, Ryota; Thirumalai, D.
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errSave
Energy landscapes of A? monomers are sculpted in accordance with Ostwald?s rule of stages
errSCIENCE ADVANCES
IF12.5
err2023-03-24
err15
errOAAI
errChakraborty, Debayan; Straub, John E.; Thirumalai, D.
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errSave

Research Directions

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Co-authors
Cooperation Journals
A
Alexander D. MacKerell
H-index: 107 · Papers: 766
B
B. J. Berne
H-index: 107 · Papers: 516
周
周如鸿 (Ruhong Zhou)
H-index: 86 · Papers: 642
A
Alexei P. Sokolov
H-index: 85 · Papers: 540
J
John W. Weisel
H-index: 78 · Papers: 436
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