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Bernard Yurke

Boise State University

66H-index
321Paper Count
2.3WCitation Count
Published Papers 53
Publication Date
Overcoming aggregation-induced quenching in DNA-assembled rhodamine dimers
err2025-08-11
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PREAI
errPaul Cavanaugh ‡; Simon K. Roy ‡; Austin Biaggne; Maia Ketteridge; Matthew S. Barclay; Ryan Rau; Jeunghoon Lee; Paul H. Davis; William B. Knowlton; Bernard Yurke; Jacob C. Dean; Lan Li; Daniel B. Turner; Ryan D. Pensack
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Tunable and robust optical and structural properties of a cooperative squaraine-dye aggregate-DNA DX-DAE tile system
err2025-08-02
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errOAAI
errSimon K. Roy; Nolan Olaso; Paul H. Davis; Olga A. Mass; Keitel Cervantes-Salguero; Jeunghoon Lee; Ryan D. Pensack; John A. Hall; Bernard Yurke; William B. Knowlton
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Control of Indodicarbocyanine Dimer Geometry Using Variable-Length Linkers to DNA Scaffolds
err2025-08-01
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PREAI
errAdam A. Meares; Sara R. Ansteatt; Sebastián A. Díaz; Young C. Kim; Paul D. Cunningham; Smriti Thomas; Victoria Segal; Angelica Rose Galvan; Gissela Pascual; Simon K. Roy; Lance K. Patten; Bernard Yurke; William B. Knowlton; Jeunghoon Lee; Igor L. Medintz; Joseph S. Melinger
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Distinguishing packing configurations of molecular dimers using excited-state absorption peaks in two-dimensional electronic spectra
err2025-05-01
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PREAI
errBarclay, Matthew S.; Cunningham, Paul D.; Pascual, Gissela; Roy, Simon K.; Patten, Lance K.; Susumu, Kimihiro; Policht, Veronica R.; Mathur, Divita; Meares, Adam; Lee, Jeunghoon; Yurke, Bernard; Knowlton, William B.; Davis, Paul H.; Pensack, Ryan D.; Medintz, Igor L.; Melinger, Joseph S.; Turner, Daniel B.
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Site-specific photo-crosslinking in a double crossover DNA tile facilitated by squaraine dye aggregates: advancing thermally stable and uniform DNA nanostructures
err2025-01-01
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errOAAI
errBasu, Shibani; Roy, Simon K.; Sharma, Mandeep; Barcenas, German; Yurke, Bernard; Knowlton, William B.; Lee, Jeunghoon
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Varying Line-Broadening Sources by Tuning the Composition of DNA-Assembled Cyanine Tetramer Aggregates
err2024-09-30
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PREAI
errWright, Nicholas D.; Barclay, Matthew S.; Diaz, Sebastian A.; Mathur, Divita; Ellis, Gregory A.; Knowlton, William B.; Yurke, Bernard; Davis, Paul H.; Medintz, Igor L.; Melinger, Joseph S.; Pensack, Ryan D.; Turner, Daniel B.
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Towards tunable exciton delocalization in DNA Holliday junction-templated indodicarbocyanine 5 (Cy5) dye derivative heterodimers
err2024-01-01
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errOAAI
errPascual, Gissela; Diaz, Sebastian A.; Roy, Simon K.; Meares, Adam; Chiriboga, Matthew; Susumu, Kimihiro; Mathur, Divita; Cunningham, Paul D.; Medintz, Igor L.; Yurke, Bernard; Knowlton, William B.; Melinger, Joseph S.; Lee, Jeunghoon
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Towards control of excitonic coupling in DNA-templated Cy5 aggregates: the principal role of chemical substituent hydrophobicity and steric interactions (vol 15, pg 3284, 2023)
err2024-01-01
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errOAAI
errDiaz, Sebastian A.; Pascual, Gissela; Patten, Lance K.; Roy, Simon K.; Meares, Adam; Chiriboga, Matthew; Susumu, Kimihiro; Knowlton, William B.; Cunningham, Paul D.; Mathur, Divita; Yurke, Bernard; Medintz, Igor L.; Lee, Jeunghoon; Melinger, Joseph S.
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Effect of hydrophilicity-imparting substituents on exciton delocalization in squaraine dye aggregates covalently templated to DNA Holliday junctions
err2024-01-01
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PREAI
errPascual, Gissela; Roy, Simon K.; Barcenas, German; Wilson, Christopher K.; Cervantes-Salguero, Keitel; Obukhova, Olena M.; Krivoshey, Alexander I.; Terpetschnig, Ewald A.; Tatarets, Anatoliy L.; Li, Lan; Yurke, Bernard; Knowlton, William B.; Mass, Olga A.; Pensack, Ryan D.; Lee, Jeunghoon
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Generation of DNA oligomers with similar chemical kinetics via in-silico optimization
err2023-10-18
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errOAAI
errTobiason, Michael; Yurke, Bernard; Hughes, William L.
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Decoding the hydrodynamic properties of microscale helical propellers from Brownian fluctuations
err2023-05-26
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errOAAI
errDjutanta, Franky; Brown, Peter T.; Nainggolan, Bonfilio; Coullomb, Alexis; Radhakrishnan, Sritharini; Sentosa, Jason; Yurke, Bernard; Hariadi, Rizal F.; Shepherd, Douglas P.
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Effect of Substituent Location on the Relationship between the Transition Dipole Moments, Difference Static Dipole, and Hydrophobicity in Squaraine Dyes for Quantum Information Devices
err2023-02-25
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errOAAI
errKetteridge, Maia; Biaggne, Austin; Rau, Ryan; Barcenas, German; Mass, Olga A.; Knowlton, William B.; Yurke, Bernard; Li, Lan
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Probing DNA structural heterogeneity by identifying conformational subensembles of a bicovalently bound cyanine dye
err2023-01-18
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errOAAI
errBarclay, Matthew S.; Chowdhury, Azhad U.; Biaggne, Austin; Huff, Jonathan S.; Wright, Nicholas D.; Davis, Paul H.; Li, Lan; Knowlton, William B.; Yurke, Bernard; Pensack, Ryan D.; Turner, Daniel B.
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Towards control of excitonic coupling in DNA-templated Cy5 aggregates: the principal role of chemical substituent hydrophobicity and steric interactions
err2023-01-01
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errOAAI
errDiaz, Sebastian A.; Pascual, Gissela; Patten, Lance K.; Roy, Simon K.; Meares, Adam; Chiriboga, Matthew; Susumu, Kimihiro; Knowlton, William B.; Cunningham, Paul D.; Mathur, Divita; Yurke, Bernard; Medintz, Igor L.; Lee, Jeunghoon; Melinger, Joseph S.
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Symmetry Breaking Charge Transfer in DNA-Templated Perylene Dimer Aggregates
err2022-10-05
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errOAAI
errDuncan, Katelyn M.; Kellis, Donald L.; Huff, Jonathan S.; Barclay, Matthew S.; Lee, Jeunghoon; Turner, Daniel B.; Davis, Paul H.; Yurke, Bernard; Knowlton, William B.; Pensack, Ryan D.
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Tunable Electronic Structure via DNA-Templated Heteroaggregates of Two Distinct Cyanine Dyes
err2022-09-28
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errOAAI
errHuff, Jonathan S.; Diaz, Sebastian A.; Barclay, Matthew S.; Chowdhury, Azhad U.; Chiriboga, Matthew; Ellis, Gregory A.; Mathur, Divita; Patten, Lance K.; Roy, Simon K.; Sup, Aaron; Biaggne, Austin; Rolczynski, Brian S.; Cunningham, Paul D.; Li, Lan; Lee, Jeunghoon; Davis, Paul H.; Yurke, Bernard; Knowlton, William B.; Medintz, Igor L.; Turner, Daniel B.; Melinger, Joseph S.; Pensack, Ryan D.
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Photocrosslinking Probes Proximity of Thymine Modifiers Tethering Excitonically Coupled Dye Aggregates to DNA Holliday Junction
err2022-06-22
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errOAAI
errBasu, Shibani; Cervantes-Salguero, Keitel; Yurke, Bernard; Knowlton, William B.; Lee, Jeunghoon; Mass, Olga A.
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Data-Driven and Multiscale Modeling of DNA-Templated Dye Aggregates
err2022-05-27
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errOAAI
errBiaggne, Austin; Spear, Lawrence; Barcenas, German; Ketteridge, Maia; Kim, Young C.; Melinger, Joseph S.; Knowlton, William B.; Yurke, Bernard; Li, Lan
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Synthesis of Substituted Cy5 Phosphoramidite Derivatives and Their Incorporation into Oligonucleotides Using Automated DNA Synthesis
err2022-03-22
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errOAAI
errMeares, Adam; Susumu, Kimihiro; Mathur, Divita; Lee, Sang Ho; Mass, Olga A.; Lee, Jeunghoon; Pensack, Ryan D.; Yurke, Bernard; Knowlton, William B.; Melinger, Joseph S.; Medintz, Igor L.
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Influence of Hydrophobicity on Excitonic Coupling in DNA-Templated Indolenine Squaraine Dye Aggregates
err2022-02-10
err24
errOAAI
errMass, Olga A.; Wilson, Christopher K.; Barcenas, German; Terpetschnig, Ewald A.; Obukhova, Olena M.; Kolosova, Olga S.; Tatarets, Anatoliy L.; Li, Lan; Yurke, Bernard; Knowlton, William B.; Pensack, Ryan D.; Lee, Jeunghoon
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