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Atsushi Toyoda

National Institute of Genetics

88H-index
628Paper Count
6.2WCitation Count
Published Papers 256
Publication Date
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Reticulate evolution, introgression, and recent diversification in Epimedium sect. Macroceras
errMolecular Phylogenetics and Evolution
IF3.6
err2026-05-22
err0
errOAAI
errEmi Kusatake; Momoka Konishi; Shuto Tomokuni; Yosuke Yanagi; Shungo Kariyama; Takehito Itoh; Atsushi Toyoda; Seung-Chul Kim; Makiko Mimura
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Molecular and functional dissection using CaMPARI-seq reveals the neuronal organization for dissociating optic flow-dependent behaviors
errNature Communications
IF15.7
err2026-04-17
err0
errOAAI
errKoji Matsuda; Chung-Han Wang; Hisaya Kakinuma; Atsushi Toyoda; Tomoya Shiraki; Koichi Kawakami; Fumi Kubo
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errSave
Complete transition from chromosomal to cytoplasmic sex determination during prolonged Wolbachia symbiosis
errNature Communications
IF15.7
err2026-01-08
err0
errOAAI
errTakahiro Fukui; Tomohiro Muro; Noriko Matsuda-Imai; Tatsunori Kaneda; Hidetaka Kosako; Hideaki Hiraki; Keisuke Shoji; Takeshi Fujii; Yutaka Suzuki; Atsushi Toyoda; Takehiko Itoh; Takashi Kiuchi; Susumu Katsuma
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eIF2D promotes 40S ribosomal subunit recycling during intrinsic ribosome destabilization
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-12-11
err0
errOAAI
errIchihara, Kazuya; Shiraishi, Taichi; Chadani, Yuhei; Kito, Yuki; Shiraishi, Chisa; Hirata, Mina; Takahashi, Yuta; Kobo, Akinao; Hatano, Atsushi; Matsumoto, Masaki; Machida, Kodai; Imataka, Hiroaki; Toyoda, Atsushi; Mishiro-Sato, Emi; Nojima, Takayuki; Ito, Takuhiro; Taguchi, Hideki; Nakayama, Keiichi, I; Matsumoto, Akinobu
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Regulated TRESLIN-MTBP loading governs initiation zones and replication timing in human DNA replication
errNature Communications
IF15.7
err2025-12-02
err0
errOAAI
errXiaoxuan Zhu; Atabek Bektash; Yuki Hatoyama; Sachiko Muramatsu; Shin-Ya Isobe; Chikashi Obuse; Atsushi Toyoda; Yasukazu Daigaku; Chun-Long Chen; Masato T. Kanemaki
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Chromosome-scale genomes of two wild flowering cherries (Cerasus itosakura and Cerasus jamasakura) provide insights into structural evolution in Cerasus
errDNA RESEARCH
IF2.9
err2025-12-01
err0
PREAI
errFujiwara, Kazumichi; Toyoda, Atsushi; Katsuki, Toshio; Sato, Yutaka; Biswa, Bhim B.; Kishida, Takushi; Tsuruta, Momi; Nakamura, Yasukazu; Mochizuki, Takako; Kimura, Noriko; Kawamoto, Shoko; Ohta, Tazro; Nonomura, Ken-Ichi; Niki, Hironori; Yano, Hiroyuki; Umehara, Kinji; Suzuki, Chikahiko; Koide, Tsuyoshi
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MoG+3.0: expanded structural variant visualization and integration of genomic data from five newly analyzed mouse strains
errMammalian Genome
IF2.7
err2025-11-19
err0
errOAAI
errToyoyuki Takada; Hideyuki Miyazawa; Masanobu Yamagata; Masaru Tamura; Atsushi Yoshiki; Atsushi Toyoda; Hideki Noguchi; Hiroshi Masuya
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Genomic Features Underlying the Origin of Sociality and the Diversification of Caste Systems in Termites
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2025-11-01
err0
PREAI
errFujiwara, Kokuto; Oka, Takateru; Ashihara, Ryusei; Miyazaki, Satoshi; Toyoda, Atsushi; Lo, Nathan; Hayashi, Yoshinobu; Maekawa, Kiyoto
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Host-mediated endophyte-pathogen competition in roots enables asymptomatic fungal colonization in Arabidopsis thaliana
errPLANT AND CELL PHYSIOLOGY
IF4
err2025-11-01
err0
PREAI
errHiruma, Kei; Pathompitaknukul, Kuldanai; Tanaka, Hiroyuki; Iwaguchi, Yuki; Miyashima, Shunsuke; Kawamura, Nanami; Toyoda, Atsushi; Itoh, Takehiko; Saijo, Yusuke
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The inbred newt genome unveils molecular mechanisms of behavior, development, and regeneration in urodele amphibians
erriScience
IF4.1
err2025-09-09
err0
errOAAI
errYuki Kimura; Miyuki Suzuki; Akinori Okumura; Masatoshi Matsunami; Hiroyo Nishide; Rima Mizuno; Kazuto Bou; Yoshinobu Uno; Tomoaki Nakada; Itaru Hasunuma; Yoshikazu Haramoto; Akimasa Fukui; Takeshi Inoue; Yuki Sato; Katsushi Yamaguchi; Zicong Zhang; Akane Chihara; Mai Takehara; Yuki Shibata; Masaaki Kitada; Nerea Moreno; Ikuo Uchiyama; Yutaka Suzuki; Takashi Takeuchi; Masato Nikaido; Kiyokazu Agata; Atsushi Toyoda; Shuji Shigenobu; Toshinori Hayashi; Ken-ichi T. Suzuki
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errSave
Cross-species implementation of an innate courtship behavior by manipulation of the sex-determinant gene
errScience
IF45.8
err2025-08-14
err0
PREAI
errRyoya Tanaka; Yusuke Hara; Kosei Sato; Soh Kohatsu; Hinata Murakami; Tomohiro Higuchi; Takeshi Awasaki; Shu Kondo; Atsushi Toyoda; Azusa Kamikouchi; Daisuke Yamamoto
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errSave
Multiple fertility restorer loci for cytoplasmic male sterility caused by mitochondrial gene orf137 in tomato
errJOURNAL OF EXPERIMENTAL BOTANY
IF5.7
err2025-08-01
err3
errOAAI
errIki, Yurie; Harada, Issei; Ezura, Kentaro; Mashita, Seira; Kuwabara, Kosuke; Takei, Hitomi; Toyoda, Atsushi; Shirasawa, Kenta; Ariizumi, Tohru
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Dynamic patterns of repeats and retrotransposons in the centromeres of Humulus lupulus L.
errNew Phytologist
IF8.1
err2025-07-15
err0
errOAAI
errLucie Horáková; Pavel Jedlička; Radim Čegan; Pavla Navrátilová; Hiroyuki Tanaka; Atsushi Toyoda; Takehiko Itoh; Takashi Akagi; Eiichiro Ono; Vojtěch Hudzieczek; Josef Patzak; Jan Šafář; Roman Hobza; Václav Bačovský
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errSave
Evolution and functioning of an X–A balance sex-determining system in hops
errNature Plants
IF13.6
err2025-06-18
err0
PREAI
errTakashi Akagi; Tenta Segawa; Rika Uchida; Hiroyuki Tanaka; Kenta Shirasawa; Noriko Yamagishi; Hajime Yaegashi; Satoshi Natsume; Hiroki Takagi; Akira Abe; Miki Okuno; Atsushi Toyoda; Kyoko Sato; Yuka Honniden; Cheng Zhang; Koichiro Ushijima; Josef Patzak; Lucie Horáková; Václav Bačovský; Roman Hobza; Deborah Charlesworth; Takehiko Itoh; Eiichiro Ono
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Characterization of targeted knock-in achieved via tandem paired nicking mediated by CRISPR/Cas9 nickases
errMethods
IF4.3
err2025-06-10
err0
PREAI
errMd Towhid Ahmed Shihan; Toshinori Hyodo; Takeshi Fujino; Md. Lutfur Rahman; Muhammad Nazmul Hasan; Mrityunjoy Biswas; Lam Quang Vu; Nushrat Jahan; Yuko Mihara; Sivasundaram Karnan; Akinobu Ota; Shinobu Tsuzuki; Atsushi Toyoda; Yoshitaka Hosokawa; Masahiro Kasahara; Hiroyuki Konishi
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Restoration of the gut-microbiota-liver axis after hepatitis C virus eradication
errJHEP Reports
IF7.5
err2025-06-01
err0
errOAAI
errTakako Inoue; Jiro Nakayama; Hiroshi Mori; Masaru Tanaka; Daisuke Nakagawa; Masaya Ohnishi; Yui Funatsu; Kei Moriya; Hideto Kawaratani; Hisayoshi Watanabe; Goki Suda; Yasuteru Kondo; Tatsuya Ide; Satoru Kakizaki; Satoshi Miuma; Atsushi Suetsugu; Kazuhito Kawata; Takao Watanabe; Etsuko Iio; Rie Momoda; Yutaka Suzuki; Akira Sakamaki; Tsunamasa Watanabe; Takehisa Watanabe; Katsuya Nagaoka; Yoichi Hiasa; Shuji Terai; Hitoshi Yoshiji; Atsushi Toyoda; Ken Kurokawa; Yasuhito Tanaka
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Whole-genome sequencing of the ant Crematogaster osakensis (Hymenoptera: Formicidae: Myrmicinae)
errDNA RESEARCH
IF2.9
err2025-06-01
err0
errOAAI
errGotoh, Ayako; Toyoda, Atsushi; Yamabe, Takahiro; Itoh, Takehiko
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errSave
3D Genome Constrains Breakpoints of Inversions That Can Act as Barriers to Gene Flow in the Stickleback
errMolecular Ecology
IF3.9
err2025-05-31
err0
errOAAI
errYo Y. Yamasaki; Atsushi Toyoda; Mitsutaka Kadota; Shigehiro Kuraku; Jun Kitano
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errSave
SLAMF6 regulates basal T cell receptor signaling and influences invariant natural killer T cell lineage diversity
errInternational Immunology
IF3.2
err2025-05-23
err0
PREAI
errYukihiro Endo; Ichita Hasegawa; Akemi Igi; Atsushi Onodera; Satomi Mita; Koichi Higashi; Ken Kurokawa; Atsushi Toyoda; Masahiro Kiuchi; Miho Shinzawa; Yangsong Wang; Ryo Koyama-Nasu; Kiyoshi Hirahara; Shinichiro Motohashi; Toshinori Nakayama; Motoko Y Kimura
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Comparative analysis of multiple DNA double-strand break repair pathways in CRISPR-mediated endogenous tagging
errCOMMUNICATIONS BIOLOGY
IF5.1
err2025-05-13
err0
errOAAI
errTei, Chiharu; Hata, Shoji; Mabuchi, Akira; Okuda, Shotaro; Ito, Kei K.; Genova, Mariya; Fukuyama, Masamitsu; Yamamoto, Shohei; Chinen, Takumi; Toyoda, Atsushi; Kitagawa, Daiju
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Research Directions

No research directions
Co-authors
Cooperation Journals
K
Kazuo Shinozaki
H-index: 202 · Papers: 1.3K
R
Richard A. Gibbs
H-index: 190 · Papers: 1.3K
M
Marc W. Kirschner
H-index: 169 · Papers: 526
P
Paul Flicek
H-index: 167 · Papers: 522
E
Eske Willerslev
H-index: 146 · Papers: 466
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