Yang Joon Kim - Publications, H-index & Citations

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Yang Joon Kim

Chan Zuckerberg Biohub

13H-index

28Paper Count

1.1KCitation Count

Published Papers 11

Publication Date

Author Correction: Trained immunity links hematopoietic stem cell aging to aging-associated inflammation

Nature Aging

IF19.4

2026-08-12

OAAI

Wei-Chieh Mu; Marine Barthez; Yufan Feng; Yibing Chen; Chih Ling Wang; Jing-Yi Huang; Jie Li; Paul Lanhart; K. Claire Tsuei; Yang Joon Kim; Eric Verdin; Mihai G. Netea; Danica Chen

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Trained immunity links hematopoietic stem cell aging to aging-associated inflammation

Nature Aging

IF19.4

2026-07-16

OAAI

Wei-Chieh Mu; Marine Barthez; Yufan Feng; Yibing Chen; Chih Ling Wang; Jing-Yi Huang; Jie Li; Paul Lanhart; Clair Tsui; Yang Joon Kim; Eric Verdin; Mihai G. Netea; Danica Chen

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CZ CELLxGENE Discover: a single-cell data platform for scalable exploration, analysis and modeling of aggregated data

NUCLEIC ACIDS RESEARCH

IF13.1

2024-11-28

OAAI

Abdulla, Shibla; Aevermann, Brian; Assis, Pedro; Badajoz, Seve; Bell, Sidney M.; Bezzi, Emanuele; Cakir, Batuhan; Chaffer, Jim; Chambers, Signe; Cherry, J. Michael; Chi, Tiffany; Chien, Jennifer; Dorman, Leah; Garcia-Nieto, Pablo; Gloria, Nayib; Hastie, Mim; Hegeman, Daniel; Hilton, Jason; Huang, Timmy; Infeld, Amanda; Istrate, Ana-Maria; Jelic, Ivana; Katsuya, Kuni; Kim, Yang Joon; Liang, Karen; Lin, Mike; Lombardo, Maximilian; Marshall, Bailey; Martin, Bruce; Mcdade, Fran; Megill, Colin; Patel, Nikhil; Predeus, Alexander; Raymor, Brian; Robatmili, Behnam; Rogers, Dave; Rutherford, Erica; Sadgat, Dana; Shin, Andrew; Small, Corinn; Smith, Trent; Sridharan, Prathap; Tarashansky, Alexander; Tavares, Norbert; Thomas, Harley; Tolopko, Andrew; Urisko, Meghan; Yan, Joyce; Yeretssian, Garabet; Zamanian, Jennifer; Mani, Arathi; Cool, Jonah; Carr, Ambrose

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Optogenetic dissection of transcriptional repression in a multicellular organism

NATURE COMMUNICATIONS

IF15.7

2024-10-26

OAAI

Zhao, Jiaxi; Lammers, Nicholas C.; Alamos, Simon; Kim, Yang Joon; Martini, Gabriella; Garcia, Hernan G.

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Single-cell and spatial multi-omics highlight effects of anti-integrin therapy across cellular compartments in ulcerative colitis

NATURE COMMUNICATIONS

IF15.7

2024-02-19

OAAI

Mennillo, Elvira; Kim, Yang Joon; Lee, Gyehyun; Rusu, Iulia; Patel, Ravi K.; Dorman, Leah C.; Flynn, Emily; Li, Stephanie; Bain, Jared L.; Andersen, Christopher; Rao, Arjun; Tamaki, Stanley; Tsui, Jessica; Shen, Alan; Lotstein, Madison L.; Rahim, Maha; Naser, Mohammad; Bernard-Vazquez, Faviola; Eckalbar, Walter; Cho, Soo-jin; Beck, Kendall; El-Nachef, Najwa; Lewin, Sara; Selvig, Daniel R.; Terdiman, Jonathan P.; Mahadevan, Uma; Oh, David Y.; Fragiadakis, Gabriela K.; Pisco, Angela; Combes, Alexis J.; Kattah, Michael G.

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Concordance of MERFISH spatial transcriptomics with bulk and single-cell RNA sequencing

LIFE SCIENCE ALLIANCE

IF2.9

2022-12-16

OAAI

Liu, Jonathan; Tran, Vanessa; Vemuri, Venkata Naga Pranathi; Byrne, Ashley; Borja, Michael; Kim, Yang Joon; Agarwal, Snigdha; Wang, Ruofan; Awayan, Kyle; Murti, Abhishek; Taychameekiatchai, Aris; Wang, Bruce; Emanuel, George; He, Jiang; Haliburton, John; Pisco, Angela Oliveira; Neff, Norma F.

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Predictive modeling reveals that higher-order cooperativity drives transcriptional repression in a synthetic developmental enhancer

ELIFE

IF0

2022-12-12

OAAI

Kim, Yang Joon; Rhee, Kaitlin; Liu, Jonathan; Jeammet, Selene; Turner, Meghan A.; Small, Stephen J.; Garcia, Hernan G.

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A matter of time: Using dynamics and theory to uncover mechanisms of transcriptional bursting

CURRENT OPINION IN CELL BIOLOGY

IF4.3

2020-12-01

OAAI

Lammers, Nicholas C.; Kim, Yang Joon; Zhao, Jiaxi; Garcia, Hernan G.

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Restoration of patterned vision with an engineered photoactivatable G protein-coupled receptor (vol 8, 1862, 2017)

NATURE COMMUNICATIONS

IF15.7

2018-03-13

OAAI

Berry, Michael H.; Holt, Amy; Levitz, Joshua; Broichhagen, Johannes; Gaub, Benjamin M.; Visel, Meike; Stanley, Cherise; Aghi, Krishan; Kim, Yang Joon; Cao, Kevin; Kramer, Richard H.; Trauner, Dirk; Flannery, John; Isacoff, Ehud Y.

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Uncovering Dynamical Mechanisms of Transcription Factor Readout in Development using Optogenetics

BIOPHYSICAL JOURNAL

IF3.1

2018-02-01

OAAI

Alamos, Simon; Kim, Yang Joon; Xiao, Jordan Y.; Earley, Elizabeth; Garcia, Hernan G.

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Restoration of patterned vision with an engineered photoactivatable G protein-coupled receptor

NATURE COMMUNICATIONS

IF15.7

2017-11-30

OAAI

Berry, Michael H.; Holt, Amy; Levitz, Joshua; Broichhagen, Johannes; Gaub, Benjamin M.; Visel, Meike; Stanley, Cherise; Aghi, Krishan; Kim, Yang Joon; Trauner, Dirk; Flannery, John; Isacoff, Ehud Y.

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Research Directions